Please check the reference TAC. Also, please send the full terminal output


On 11/11/2017 06:07 AM, Conchy PF wrote:
> Dear Douglas,
>
> I had the same problem as Jonathan described in his post "PET
> processing seg fault with mri_glmfit --mrtm1"
> (https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2016-January/043144.html).
>
> In my case, I used this command:
>
> mri_glmfit --y gtmpvc/km.hb.tac.nii.gz --mrtm1 gtmpvc/km.ref.tac.dat
> time.dat --o mrtm1 --no-est-fwhm --nii.gz
>
> And I got this message:
>
> /Applications/freesurfer/bin/mri_glmfit: line 3: 27756 Segmentation
> fault: 11mri_glmfit.bin "$@"
>
> Following your advice, I checked if km.hb.tac.nii.gz was all 0 using
>
> hb = fast_vol2mat( MRIread('km.hb.tac.nii.gz'));
> plot(hb)
>
> in matlab, but that is not the case
>
> Inline image 1
>
> I also checked the table.dat format and it was correct, and I tried
> using mri_glmfit.bin command insted, but it did not work.
>
> Could you give me some advice, so I can keep running the PET surfer
> pipeline?
>
> Thank you in advance and kind regards,
>
> CP
>
>
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--
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422

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