Im not sure if its the problem or not, but seems that its the file permission error.
Either do "sudo su" and re-run your command as root or change the file permissions in /subjects folder.
Running commands as "root" is generally not recommended.
Hello freesurfer developers,I installed FreeSurfer on my computer today using the instructions found here: https://surfer.nmr.mgh.harvard.edu/fswiki/DownloadAndInstall. After installation, I proceed to the “test your FreeSurfer Installation” section. Upon trying the first test, I ran the following and code and received the following error.Sherryses-iMac:~ sherrysecorrow$ cd $FREESURFER_HOME/subjectsSherryses-iMac:subjects sherrysecorrow$ mri_convert sample-001.mgz sample-001.nii.gzmri_convert sample-001.mgz sample-001.nii.gz$Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $reading from sample-001.mgz...TR=7.25, TE=3.22, TI=600.00, flip angle=7.00i_ras = (-0, -1, -0)j_ras = (-0, 0, -1)k_ras = (-1, 0, 0)writing to sample-001.nii.gz...niiWrite(): error opening file sample-001.nii.gzERROR: failure writing sample-001.nii.gzI’ve searched the list and was unable to find someone with the same error in the archives. Any thoughts on how to fix this?freesurfer-Darwin-lion-stable-pub-v5.3.0Mac OS X version 10.9.5uname -aDarwin Sherryses-iMac.local 13.4.0 Darwin Kernel Version 13.4.0: Mon Jan 11 18:17:34 PST 2016; root:xnu-2422.115.15~1/RELEASE_X86_64 x86_64Thanks,Sherryse
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