Hello,

 

I would like to use the Brainnectome atlas for cortical thickness analysis parcellations. The T1 template volume (nifti file type) is attached if helpful. I have seen a couple of posts on this, but am not clear about the process. For example, the response to a similar comment was to “run recon-all on the AAL anatomical T1w volume template”. At this point, I do not know what files, transformations, and/or code modifications are needed. For example, does the brainnectome template volume need to be preprocessed in any way, does it need to be saved in the MGH format? If so, how is this done? Does the process require any other files or subroutines?

 

In summary, I am wondering if you can “walk me through” the process or provide a detailed example. Any help would be greatly appreciated! Thank you for your time.

 

Best,

 

Shawn

 

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Shawn Flanagan, Ph.D.
Assistant Professor

University of Pittsburgh
School of Health and Rehabilitation Sciences
Department of Sports Medicine and Nutrition

Neuromuscular Research Laboratory
Warrior Human Performance Research Center

3860 South Water Street
Pittsburgh, PA 15203
sdf29@pitt.edu Email
412.246.0460 Office
630.854.0547 Mobile

Neuromuscular Research Laboratory