Yea, there's not a mask to label. There is a mask to brain, but I'm not sure if you can substitute your own mask for it. I just tried to run it, and could not get FDR to work at all in tkmedit. Is it working for you at all?

doug

Dan Dillon wrote:

Dear FreeSurfers,

I’ve created a basal ganglia label and am wondering if it’s possible to constrain the FDR calculation to that label? Based on earlier messages it seems like tksurfer has a “marked label only” option for FDR, but I haven’t been able to find something similar in tkmedit. Any help greatly appreciated.

Thanks!

Dan Dillon, Ph.D.

Post-doctoral Fellow

Affective Neuroscience Lab

Dept. of Psychology, Harvard University

Phone: (617) 495-1889

E-mail: dillon@wjh.harvard.edu
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