Hi Freesurfer Experts,

I seem to be having some difficulty with reconing a healthy young adult. I have tried running this on multiple different computers and multiple different versions (5.3 and 5.1) and all return the same weird recon (see attached image). I have used the same sequence and commands on another subject and the recon returned fine.

This participant did not have excess motion and the orig.mgz file looks fine. Please let me know if there is any more information I could provide that would be of use.

Commands used:

5.3:

recon-all -all -FLAIR (FLAIR image) -subjid (SUBJID) -FLAIRpial -hippo-subfields

recon-all -all -subjid (SUBJID)

5.1:

recon-all -all -subjid (SUBJID) -hippo-subfields

recon-all -all -subjid (SUBJID)

Thanks,
Danielle Miller

--
Ph.D. Program in Behavioral Neuroscience
Boston University School of Medicine L-815
72 E. Concord St
Boston, MA 02118

VA Boston Healthcare System Jamaica Plain
Memory Disorders Research Center
150 South Huntington Ave D11-103
Boston, MA 02130
OFFICE:(857) 364-2130