Hello folks,

I am attempting to run FreeSurfer (v5.1) on a downloaded NifTI structural T1 MRI from the Human Connectome Project, in particular 100307_3T_AFI.nii.  Unless I am mistaken, their preprocessed data doesn't include aseg data, at least identified in a manner I am familiar with.  Nevertheless,  recon-all -s 100307_cs -all reports:

ERROR: input(s) cannot have multiple frames!

/Applications/freesurfer/subjects/100307_cs/mri/orig/001.mgz has 2 frames.

How do I work around this?

Thanks,  Al

Alfred L. Ochs, Ph.D.

Virginia Institute for Neuropsychiatry

Richmond, Virginia