Hi All,

I'm using : freesurfer-Darwin-leopard-i686-stable-pub-v5.0.0

I'd like to plot HDR for each condition for each subject.

With FreeSurfer v4.5.0, I did so with func2roi-sess and roisummary-sess.

With v5.0, those commands do not seem to work.

I could get a table with:

funcroi-config -analysis VMfwhm5lh -label lh_DLPFC -roi lh.DLPFC.roicfg -contrast all_null -sign abs -thresh 1 -force
funcroi-sess -roi lh.DLPFC.roicfg -df sessdirfile -s VM20
funcroi-table-sess -o /Users/yuko/Documents/FreeSurfer/sessions/VM/VMan/ROIs/lh_DLPFC/lh_DLPFC_VM20.txt -roi lh.DLPFC.roicfg -df sessdirfile -s VM20 -a VMfwhm5lh -c all_null

However, what I want is BOLD values in each time point for all conditions.

funcroi-table-sess fails if I do not specify a contrast.

funcroi-config -analysis VMfwhm5lh -label lh_DLPFC -roi lh.DLPFC.roicfg -force
funcroi-sess -roi lh.DLPFC.roicfg -df sessdirfile -s VM20
funcroi-table-sess -o /Users/yuko/Documents/FreeSurfer/sessions/VM/VMan/ROIs/lh_DLPFC/lh_DLPFC_VM20.txt -roi lh.DLPFC.roicfg -df sessdirfile -s VM20 -a VMfwhm5lh

ERROR: must specify a contrast

Is there a command that gives me values, not a table?

Thank you,

Yuko