Zahra (Mona) Nasiriavanaki

Postdoctoral Research Fellow

Martinos Center for Biomedical Imaging

Massachusetts General Hospital

149 13th Street, 149-2615

Charlestown, MA, USA, 02129

On Aug 15, 2019, at 4:30 PM, Nasiriavanaki, Zahra <ZNASIRIAVANAKI@mgh.harvard.edu> wrote:

Hi Freesurfer experts

I wanted to follow up on my question about "spatial scale bar" for significancy maps in FS.

I appreciate if you let me know about the updates on that.

Thanks

Mona

Zahra (Mona) Nasiriavanaki

Postdoctoral Research Fellow

Martinos Center for Biomedical Imaging

Massachusetts General Hospital

149 13th Street, 149-2615

Charlestown, MA, USA, 02129

---

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Bruce Fischl <fischl@nmr.mgh.harvard.edu>
Sent: Monday, May 13, 2019 9:56:41 AM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] spatial scale bar question

 

Hi Mona

sure. As I said it is a bit more complicated than it seems. Ruopeng will 
post a note when something usable is in the dev version

Bruce


On Mon, 13 May 
2019, Nasiriavanaki, Zahra wrote:

> 
> Yes Bruce.
> 
> It doesn't work.
> 
> I appreciate if you could let me know when you had any updates on it.
> 
> 
> Thanks
> 
> Mona
> 
> ___________________________________________________________________________________________________
> From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of
> Bruce Fischl <fischl@nmr.mgh.harvard.edu>
> Sent: Friday, May 10, 2019 6:15:05 PM
> To: Freesurfer support list
> Subject: Re: [Freesurfer] spatial scale bar question  
> I don't think it currently works in 3D mode as it is not trivial due to
> perspective transforms. Ruopeng is trying some things
> On Fri, 10 May 2019,
> Greve, Douglas N.,Ph.D. wrote:
> 
> > here is a pick of it
> > https://gate.nmr.mgh.harvard.edu/safelinks/greve/fv.colorbar.gif
> 
> [fv.colorbar.gif]
> 
> 
> >
> >
> > On 5/10/2019 3:40 PM, Nasiriavanaki, Zahra wrote:
> >
> >       Thanks for your reply.
> >
> >       I have overlaid the significance map on an inflated brain, and I don't see the scale
> >       bar icon anywhere.
> >
> >       tksurferfv fsaverage lh inflated -ov sig.nii.gz
> >
> >
> >__________________________________________________________________________________________________
> _
> > From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on
> > behalf of Greve, Douglas N.,Ph.D. <DGREVE@mgh.harvard.edu>
> > Sent: Friday, May 10, 2019 3:27:15 PM
> > To: freesurfer@nmr.mgh.harvard.edu
> > Subject: Re: [Freesurfer] spatial scale bar question  
> > In freeview, it is just an icon above the image window. Click on it and it should give you a
> > scale bar
> >
> > On 5/10/2019 3:13 PM, Nasiriavanaki, Zahra wrote:
> >
> >       Dear Freesurfers 
> >
> >       Hi
> >
> >
> >       I am trying to add a spatial scale bar to my cortical maps in tksurfer. However,
> >       as it's mentioned in Freesurfer forum before, the scale bar in tksurfer shrinks
> >       when you zoom in the brain.
> >
> >       I couldn't find a scale bar option in Freeview neither.
> >
> >       I appreciate if you could let me know how to get a scale bar.
> >
> >
> >       Thanks
> >
> >       Mona
> >
> >
> >
> > _______________________________________________
> > Freesurfer mailing list
> > Freesurfer@nmr.mgh.harvard.edu
> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> >
> >
> >
> > _______________________________________________
> > Freesurfer mailing list
> > Freesurfer@nmr.mgh.harvard.edu
> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> >
> >
> >
> >
> 
>

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