We don't have ways to automatically segment those (yet). They were optimistically added to the LUT a few years ago:)

On 12/14/18 10:49 AM, Chama Belkhiria wrote:

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Dear comittee, 
I need ROIs of Inferior Colliculus and Brainstem-cochlear-nucleus. Can freesurfer distinguish it from other brainstem structures in segmentation?
I have found these references in the LUT "7100  Brainstem-inferior-colliculus  and 7101  Brainstem-cochlear-nucleus", but idid not find them in the aseg or aparac files. 
How to measure the volume and thickness of these regions? 
Thank you in advance
Chama 

*****
Post Doctoral Researcher
Audition and Cognition Center
Neurosciences Department
Faculty of Medicine, University of Chile



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