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Difficult to enlarge your screenshots and read the text, but it looks like even though the output from the setup script displays the path to FREESSURFER_HOME, the script wrapper for the shell cannot verify that path actually exists.   And it looks like you are using a “dot” directory named “.local” in your path for FREESURFER_HOME which is usually reserved for hidden subdirs in the shell.  I would not name any subdirectory to begin with a "dot" for normal use with the shell, so try

$ mv .local local

… reset FREESURFER_HOME, source the setup script again, and see if running the command works.

- R.

On Nov 15, 2022, at 19:59, Eric Yin <eric.yin@mail.utoronto.ca> wrote:

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Hello!
 
I’m trying to run the aparcstats2table function on a single participant and I cannot seem to get rid of the following segmentation fault error. I checked the forums and did not find anyone with the same problem.
 
<9ECE8F5D2E7645A5962B55E842687C47.png>
 
I have tried a few different options. First, I read that aparcstats2table requires PATH to lead to python2, but this call would throw the error that freesurfer has not been sourced properly even though I sourced it manually. Please find my Freesurfer version in the screenshot as well. I’m running on CentOS Linux v7 (Core).
 
<4E289904EB384B21861CA9E16B7DD234.png>
 
Then I thought that it might be because freesurfer/7.2.0 requires a newer version of python, but it also did not work for python3 or python3.6.
 
<64B17BE84D1E4AFBBF7FFCE28ED15CD7.png>
 
Please let me know if I’m doing something wrong, or if anyone has run into a similar issue.
 
Thank you for your time.
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