Does that file exist?
doug

On 7/10/13 8:25 PM, Aaron Tanenbaum wrote:
Thank you fore responding.
I ran recon-all and it worked fine. however when i run bbregister i get an error
"ERROR: cannot find /usr/lib/fsl/etc/flirtsch/xyztrans.sch". I have installed fsl 5.0 and FSLDIR set right
i am running this in ubuntu 12.04 using freesurfer 5.3. am I doing some thing wrong
thank you
Aaron Tanenbaum



On Wed, Jul 10, 2013 at 11:34 AM, Douglas N Greve <greve@nmr.mgh.harvard.edu> wrote:

You will need to register your volume with the anatomical with
bbregister. bbregister will take a "template" which should be the time
point you used for motion correction. Then run mri_vol2surf to create a
new data set sampled on the surface
doug



On 07/10/2013 12:32 PM, Aaron Tanenbaum wrote:
> Hola Freesurfers,
> I am new to Freesurfer and still learning the basics. I have been
> given a project and have not found a way to do it. Part of this task
> involves taking a 4dfp volume time series and convert it to a time
> series of a surface. This 4dfp I have is a statistical analysis mapped
> on to a specific atlas volume. Does anyone know of a way to do this.
> Any help will be highly appreciated.
> Gracias
> Aaron Tanenbaum
>
>
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MGH-NMR Center
greve@nmr.mgh.harvard.edu
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