My name is Sofia and I work with Drs. Eva Ratai and Lilly Mujica-Parodi on the DCC project. I am reaching out to ask for your advice on a FreeSurfer question.
I am using recon-all to try to quantify and compare GM volume and mean thickness among our subjects. In essence, I think I have all the necessary measurements in the outcome files titled aseg.stats and ?h.aparc.stats. Would you happen to know how I can customize
the stream and reduce the processing time by taking out steps from the -all process? In other words, what would be the minimal set of steps that I have to run in order to acquire the above output
files?
Thank you in advance!
Kindly,
Sofia