WARNING: tcsh v6.17.06 has an exit code bug! Please update tcsh! Subject Stamp: freesurfer-Linux-centos6_x86_64-stable-pub-v5.2.0 Current Stamp: freesurfer-Linux-centos6_x86_64-stable-pub-v5.2.0 INFO: SUBJECTS_DIR is /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer Actual FREESURFER_HOME /usr/local/freesurfer Linux linux-To-be-filled-by-O-E-M 3.2.0-39-generic #62-Ubuntu SMP Thu Feb 28 00:28:53 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux #-------------------------------------------- #@# MotionCor Fri Apr 5 13:13:21 CEST 2013 Found 1 runs /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/orig/001.mgz Checking for (invalid) multi-frame inputs... WARNING: only one run found. This is OK, but motion correction cannot be performed on one run, so I'll copy the run to rawavg and continue. cp /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/orig/001.mgz /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/rawavg.mgz /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019 mri_convert /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/rawavg.mgz /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/orig.mgz --conform mri_convert /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/rawavg.mgz /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/orig.mgz --conform $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/rawavg.mgz... TR=8.18, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.065149, -0.997798, 0.0124318) j_ras = (0.0464102, -0.0154746, -0.998803) k_ras = (0.996796, -0.0644951, 0.0473175) Original Data has (0.9375, 0.9375, 1) mm size and (256, 256, 160) voxels. Data is conformed to 1 mm size and 256 voxels for all directions changing data type from short to uchar (noscale = 0)... MRIchangeType: Building histogram Reslicing using trilinear interpolation writing to /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/orig.mgz... mri_add_xform_to_header -c /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/transforms/talairach.xfm /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/orig.mgz /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/orig.mgz INFO: extension is mgz #-------------------------------------------- #@# Talairach Fri Apr 5 13:13:31 CEST 2013 /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri mri_nu_correct.mni --n 1 --proto-iters 1000 --distance 50 --no-rescale --i orig.mgz --o orig_nu.mgz talairach_avi --i orig_nu.mgz --xfm transforms/talairach.auto.xfm removed `orig_nu.mgz' removed `orig_nu.log' cp transforms/talairach.auto.xfm transforms/talairach.xfm #-------------------------------------------- #@# Talairach Failure Detection Fri Apr 5 13:15:27 CEST 2013 /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri talairach_afd -T 0.005 -xfm transforms/talairach.xfm talairach_afd: Talairach Transform: transforms/talairach.xfm OK (p=0.5560, pval=0.2115 >= threshold=0.0050) awk -f /usr/local/freesurfer/bin/extract_talairach_avi_QA.awk /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/transforms/talairach_avi.log tal_QC_AZS /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/transforms/talairach_avi.log TalAviQA: 0.97594 z-score: 0 TalAviQA2: -16.1672 #-------------------------------------------- #@# Nu Intensity Correction Fri Apr 5 13:15:27 CEST 2013 mri_nu_correct.mni --i orig.mgz --o nu.mgz --uchar transforms/talairach.xfm --n 2 /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri /usr/local/freesurfer/bin/mri_nu_correct.mni --i orig.mgz --o nu.mgz --uchar transforms/talairach.xfm --n 2 nIters 2 $Id: mri_nu_correct.mni,v 1.18.2.1 2013/01/09 21:23:42 nicks Exp $ Linux linux-To-be-filled-by-O-E-M 3.2.0-39-generic #62-Ubuntu SMP Thu Feb 28 00:28:53 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux Fri Apr 5 13:15:27 CEST 2013 Program nu_correct, built from: Package MNI N3, version 1.10, compiled by nicks@minerva (x86_64-unknown-linux-gnu) on 2010-02-20 at 17:32:37 tmpdir is ./tmp.mri_nu_correct.mni.11427 /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri mri_convert orig.mgz ./tmp.mri_nu_correct.mni.11427/nu0.mnc -odt float mri_convert orig.mgz ./tmp.mri_nu_correct.mni.11427/nu0.mnc -odt float $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from orig.mgz... TR=8.18, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, -2.23517e-08, -7.45058e-09) j_ras = (1.11759e-08, -2.32831e-10, -1) k_ras = (1.3411e-07, 1, -4.42378e-09) changing data type from uchar to float (noscale = 0)... writing to ./tmp.mri_nu_correct.mni.11427/nu0.mnc... -------------------------------------------------------- Iteration 1 Fri Apr 5 13:15:29 CEST 2013 nu_correct -clobber ./tmp.mri_nu_correct.mni.11427/nu0.mnc ./tmp.mri_nu_correct.mni.11427/nu1.mnc -tmpdir ./tmp.mri_nu_correct.mni.11427/0/ [linux@linux-To-be-filled-by-O-E-M:/home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/] [2013-04-05 13:15:29] running: /usr/local/freesurfer/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 50 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1 -distance 200 -quiet -execute -clobber -nokeeptmp -tmpdir ./tmp.mri_nu_correct.mni.11427/0/ ./tmp.mri_nu_correct.mni.11427/nu0.mnc ./tmp.mri_nu_correct.mni.11427/nu1.imp Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Number of iterations: 38 CV of field change: 0.000997593 [linux@linux-To-be-filled-by-O-E-M:/home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/] [2013-04-05 13:15:47] running: /usr/local/freesurfer/mni/bin/make_template -quiet -shrink 3 ./tmp.mri_nu_correct.mni.11427/nu0.mnc ./tmp.mri_nu_correct.mni.11427/0//template.mnc Transforming slices:......................................................................................Done Transforming slices:................................................................................................................................................................................................................................................................Done -------------------------------------------------------- Iteration 2 Fri Apr 5 13:15:49 CEST 2013 nu_correct -clobber ./tmp.mri_nu_correct.mni.11427/nu1.mnc ./tmp.mri_nu_correct.mni.11427/nu2.mnc -tmpdir ./tmp.mri_nu_correct.mni.11427/1/ [linux@linux-To-be-filled-by-O-E-M:/home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/] [2013-04-05 13:15:49] running: /usr/local/freesurfer/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 50 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1 -distance 200 -quiet -execute -clobber -nokeeptmp -tmpdir ./tmp.mri_nu_correct.mni.11427/1/ ./tmp.mri_nu_correct.mni.11427/nu1.mnc ./tmp.mri_nu_correct.mni.11427/nu2.imp Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Number of iterations: 47 CV of field change: 0.000990425 [linux@linux-To-be-filled-by-O-E-M:/home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/] [2013-04-05 13:16:13] running: /usr/local/freesurfer/mni/bin/make_template -quiet -shrink 3 ./tmp.mri_nu_correct.mni.11427/nu1.mnc ./tmp.mri_nu_correct.mni.11427/1//template.mnc Transforming slices:......................................................................................Done Transforming slices:................................................................................................................................................................................................................................................................Done mri_binarize --i ./tmp.mri_nu_correct.mni.11427/nu2.mnc --min -1 --o ./tmp.mri_nu_correct.mni.11427/ones.mgz $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri cmdline mri_binarize --i ./tmp.mri_nu_correct.mni.11427/nu2.mnc --min -1 --o ./tmp.mri_nu_correct.mni.11427/ones.mgz sysname Linux hostname linux-To-be-filled-by-O-E-M machine x86_64 user linux input ./tmp.mri_nu_correct.mni.11427/nu2.mnc frame 0 nErode3d 0 nErode2d 0 output ./tmp.mri_nu_correct.mni.11427/ones.mgz Binarizing based on threshold min -1 max +infinity binval 1 binvalnot 0 Found 16777216 values in range Counting number of voxels Found 16777216 voxels in final mask mri_binarize done mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.11427/ones.mgz --i orig.mgz --sum ./tmp.mri_nu_correct.mni.11427/sum.junk --avgwf ./tmp.mri_nu_correct.mni.11427/input.mean.dat $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $ cwd cmdline mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.11427/ones.mgz --i orig.mgz --sum ./tmp.mri_nu_correct.mni.11427/sum.junk --avgwf ./tmp.mri_nu_correct.mni.11427/input.mean.dat sysname Linux hostname linux-To-be-filled-by-O-E-M machine x86_64 user linux UseRobust 0 Loading ./tmp.mri_nu_correct.mni.11427/ones.mgz Loading orig.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 1 segmentations Computing statistics for each segmentation 0 1 16777216 16777216.000 Reporting on 1 segmentations Computing spatial average of each frame 0 Writing to ./tmp.mri_nu_correct.mni.11427/input.mean.dat mri_segstats done mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.11427/ones.mgz --i ./tmp.mri_nu_correct.mni.11427/nu2.mnc --sum ./tmp.mri_nu_correct.mni.11427/sum.junk --avgwf ./tmp.mri_nu_correct.mni.11427/output.mean.dat $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $ cwd cmdline mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.11427/ones.mgz --i ./tmp.mri_nu_correct.mni.11427/nu2.mnc --sum ./tmp.mri_nu_correct.mni.11427/sum.junk --avgwf ./tmp.mri_nu_correct.mni.11427/output.mean.dat sysname Linux hostname linux-To-be-filled-by-O-E-M machine x86_64 user linux UseRobust 0 Loading ./tmp.mri_nu_correct.mni.11427/ones.mgz Loading ./tmp.mri_nu_correct.mni.11427/nu2.mnc Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 1 segmentations Computing statistics for each segmentation 0 1 16777216 16777216.000 Reporting on 1 segmentations Computing spatial average of each frame 0 Writing to ./tmp.mri_nu_correct.mni.11427/output.mean.dat mri_segstats done mris_calc -o ./tmp.mri_nu_correct.mni.11427/nu2.mnc ./tmp.mri_nu_correct.mni.11427/nu2.mnc mul 1.03001828709628360207 Saving result to './tmp.mri_nu_correct.mni.11427/nu2.mnc' (type = MINC ) [ ok ] mri_convert ./tmp.mri_nu_correct.mni.11427/nu2.mnc nu.mgz --like orig.mgz mri_convert ./tmp.mri_nu_correct.mni.11427/nu2.mnc nu.mgz --like orig.mgz $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from ./tmp.mri_nu_correct.mni.11427/nu2.mnc... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, -2.23517e-08, -7.45058e-09) j_ras = (1.11759e-08, -2.32831e-10, -1) k_ras = (1.3411e-07, 1, -4.42378e-09) INFO: transform src into the like-volume: orig.mgz writing to nu.mgz... mri_make_uchar nu.mgz transforms/talairach.xfm nu.mgz type change took 0 minutes and 7 seconds. mapping ( 3, 102) to ( 3, 110) Fri Apr 5 13:16:51 CEST 2013 mri_nu_correct.mni done mri_add_xform_to_header -c /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/transforms/talairach.xfm nu.mgz nu.mgz INFO: extension is mgz #-------------------------------------------- #@# Intensity Normalization Fri Apr 5 13:16:52 CEST 2013 /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri mri_normalize -g 1 nu.mgz T1.mgz using max gradient = 1.000 reading from nu.mgz... normalizing image... talairach transform 1.074 -0.056 0.050 4.227; -0.004 0.976 0.486 -18.331; -0.079 -0.416 1.160 36.359; 0.000 0.000 0.000 1.000; processing without aseg, no1d=0 MRInormInit(): INFO: Modifying talairach volume c_(r,a,s) based on average_305 MRInormalize(): MRIsplineNormalize(): npeaks = 10 Starting OpenSpline(): npoints = 10 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Iterating 2 times --------------------------------- 3d normalization pass 1 of 2 white matter peak found at 111 white matter peak found at 91 gm peak at 72 (72), valley at 64 (64) csf peak at 19, setting threshold to 54 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... --------------------------------- 3d normalization pass 2 of 2 white matter peak found at 111 white matter peak found at 91 gm peak at 70 (70), valley at 59 (59) csf peak at 19, setting threshold to 53 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Done iterating --------------------------------- writing output to T1.mgz 3D bias adjustment took 2 minutes and 6 seconds. #-------------------------------------------- #@# Skull Stripping Fri Apr 5 13:18:58 CEST 2013 /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri mri_em_register -skull nu.mgz /usr/local/freesurfer/average/RB_all_withskull_2008-03-26.gca transforms/talairach_with_skull.lta ======= NUMBER OF OPENMP THREADS = 1 ======= aligning to atlas containing skull, setting unknown_nbr_spacing = 5 reading 1 input volumes... logging results to talairach_with_skull.log reading '/usr/local/freesurfer/average/RB_all_withskull_2008-03-26.gca'... average std = 23.1 using min determinant for regularization = 53.4 0 singular and 5702 ill-conditioned covariance matrices regularized reading 'nu.mgz'... freeing gibbs priors...done. bounding unknown intensity as < 20.2 or > 943.7 total sample mean = 92.0 (1443 zeros) ************************************************ spacing=8, using 3481 sample points, tol=1.00e-05... ************************************************ register_mri: find_optimal_transform find_optimal_transform: nsamples 3481, passno 0, spacing 8 resetting wm mean[0]: 117 --> 126 resetting gm mean[0]: 74 --> 74 input volume #1 is the most T1-like using real data threshold=6.0 skull bounding box = (51, 31, 21) --> (209, 255, 232) using (104, 106, 127) as brain centroid... mean wm in atlas = 126, using box (85,78,101) --> (123, 133,153) to find MRI wm before smoothing, mri peak at 98 after smoothing, mri peak at 98, scaling input intensities by 1.286 scaling channel 0 by 1.28571 initial log_p = -4.7 ************************************************ First Search limited to translation only. ************************************************ max log p = -4.694502 @ (-9.091, 9.091, -9.091) max log p = -4.625880 @ (4.545, 4.545, 4.545) max log p = -4.610518 @ (2.273, 2.273, -6.818) max log p = -4.586807 @ (-1.136, -5.682, -1.136) max log p = -4.586807 @ (0.000, 0.000, 0.000) max log p = -4.586807 @ (0.000, 0.000, 0.000) Found translation: (-3.4, 10.2, -12.5): log p = -4.587 **************************************** Nine parameter search. iteration 0 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-4.3, old_max_log_p =-4.6 (thresh=-4.6) 1.150 0.000 0.000 -22.785; 0.000 1.071 0.618 -62.249; 0.000 -0.575 0.996 59.241; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 1 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-4.3, old_max_log_p =-4.3 (thresh=-4.3) 1.140 0.148 0.063 -44.445; -0.161 1.211 0.515 -37.789; 0.000 -0.430 1.068 35.708; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 2 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-4.2, old_max_log_p =-4.3 (thresh=-4.3) 1.140 0.148 0.063 -44.445; -0.173 1.302 0.553 -49.707; 0.000 -0.430 1.068 35.708; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 3 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-4.2, old_max_log_p =-4.2 (thresh=-4.2) 1.140 0.148 0.063 -44.445; -0.173 1.302 0.553 -49.707; 0.000 -0.430 1.068 35.708; 0.000 0.000 0.000 1.000; reducing scale to 0.2500 **************************************** Nine parameter search. iteration 4 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-4.2, old_max_log_p =-4.2 (thresh=-4.2) 1.206 0.056 0.149 -56.406; -0.131 1.204 0.590 -48.943; -0.100 -0.514 1.001 66.524; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 5 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-4.2, old_max_log_p =-4.2 (thresh=-4.2) 1.206 0.056 0.149 -56.406; -0.131 1.204 0.590 -48.943; -0.100 -0.514 1.001 66.524; 0.000 0.000 0.000 1.000; reducing scale to 0.0625 **************************************** Nine parameter search. iteration 6 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-4.2, old_max_log_p =-4.2 (thresh=-4.2) 1.207 0.052 0.157 -57.407; -0.132 1.194 0.605 -49.827; -0.108 -0.533 0.988 70.896; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 7 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-4.2, old_max_log_p =-4.2 (thresh=-4.2) 1.207 0.052 0.157 -57.407; -0.132 1.194 0.605 -49.827; -0.108 -0.533 0.988 70.896; 0.000 0.000 0.000 1.000; min search scale 0.025000 reached *********************************************** Computing MAP estimate using 3481 samples... *********************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-05 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.20668 0.05179 0.15706 -57.40712; -0.13234 1.19409 0.60517 -49.82734; -0.10819 -0.53347 0.98842 70.89584; 0.00000 0.00000 0.00000 1.00000; nsamples 3481 Quasinewton: input matrix 1.20668 0.05179 0.15706 -57.40712; -0.13234 1.19409 0.60517 -49.82734; -0.10819 -0.53347 0.98842 70.89584; 0.00000 0.00000 0.00000 1.00000; IFLAG= -1 LINE SEARCH FAILED. SEE DOCUMENTATION OF ROUTINE MCSRCH ERROR RETURN OF LINE SEARCH: INFO= 3 POSSIBLE CAUSES: FUNCTION OR GRADIENT ARE INCORRECT OR INCORRECT TOLERANCESoutof QuasiNewtonEMA: 010: -log(p) = -0.0 tol 0.000010 Resulting transform: 1.207 0.052 0.157 -57.407; -0.132 1.194 0.605 -49.827; -0.108 -0.533 0.988 70.896; 0.000 0.000 0.000 1.000; pass 1, spacing 8: log(p) = -4.2 (old=-4.7) transform before final EM align: 1.207 0.052 0.157 -57.407; -0.132 1.194 0.605 -49.827; -0.108 -0.533 0.988 70.896; 0.000 0.000 0.000 1.000; ************************************************** EM alignment process ... Computing final MAP estimate using 382743 samples. ************************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-07 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.20668 0.05179 0.15706 -57.40712; -0.13234 1.19409 0.60517 -49.82734; -0.10819 -0.53347 0.98842 70.89584; 0.00000 0.00000 0.00000 1.00000; nsamples 382743 Quasinewton: input matrix 1.20668 0.05179 0.15706 -57.40712; -0.13234 1.19409 0.60517 -49.82734; -0.10819 -0.53347 0.98842 70.89584; 0.00000 0.00000 0.00000 1.00000; IFLAG= -1 LINE SEARCH FAILED. SEE DOCUMENTATION OF ROUTINE MCSRCH ERROR RETURN OF LINE SEARCH: INFO= 6 POSSIBLE CAUSES: FUNCTION OR GRADIENT ARE INCORRECT OR INCORRECT TOLERANCESoutof QuasiNewtonEMA: 012: -log(p) = 4.6 tol 0.000000 final transform: 1.207 0.052 0.157 -57.407; -0.132 1.194 0.605 -49.827; -0.108 -0.533 0.988 70.896; 0.000 0.000 0.000 1.000; writing output transformation to transforms/talairach_with_skull.lta... registration took 30 minutes and 1 seconds. mri_watershed -T1 -brain_atlas /usr/local/freesurfer/average/RB_all_withskull_2008-03-26.gca transforms/talairach_with_skull.lta T1.mgz brainmask.auto.mgz Mode: T1 normalized volume Mode: Use the information of atlas (default parms, --help for details) ********************************************************* The input file is T1.mgz The output file is brainmask.auto.mgz Weighting the input with atlas information before watershed *************************WATERSHED************************** Sorting... first estimation of the COG coord: x=137 y=98 z=113 r=83 first estimation of the main basin volume: 2450593 voxels Looking for seedpoints 2 found in the cerebellum 11 found in the rest of the brain global maximum in x=107, y=81, z=150, Imax=255 CSF=18, WM_intensity=110, WM_VARIANCE=5 WM_MIN=110, WM_HALF_MIN=110, WM_HALF_MAX=110, WM_MAX=110 preflooding height equal to 10 percent done. Analyze... main basin size=8745880063 voxels, voxel volume =1.000 = 8745880063 mmm3 = 8745879.552 cm3 done. PostAnalyze...Basin Prior 2 basins merged thanks to atlas ***** 0 basin(s) merged in 1 iteration(s) ***** 0 voxel(s) added to the main basin done. Weighting the input with prior template ****************TEMPLATE DEFORMATION**************** second estimation of the COG coord: x=132,y=104, z=105, r=9251 iterations ^^^^^^^^ couldn't find WM with original limits - expanding ^^^^^^ GLOBAL CSF_MIN=0, CSF_intensity=9, CSF_MAX=35 , nb = 45821 RIGHT_CER CSF_MIN=0, CSF_intensity=14, CSF_MAX=31 , nb = -1027316640 LEFT_CER CSF_MIN=0, CSF_intensity=4, CSF_MAX=33 , nb = 1091631015 RIGHT_BRAIN CSF_MIN=0, CSF_intensity=9, CSF_MAX=34 , nb = -1072847992 LEFT_BRAIN CSF_MIN=0, CSF_intensity=9, CSF_MAX=35 , nb = 1073562178 OTHER CSF_MIN=0, CSF_intensity=15, CSF_MAX=28 , nb = 1080789610 CSF_MAX TRANSITION GM_MIN GM GLOBAL before analyzing : 35, 36, 38, 68 after analyzing : 35, 37, 38, 44 RIGHT_CER before analyzing : 31, 33, 38, 68 after analyzing : 31, 36, 38, 44 LEFT_CER before analyzing : 33, 35, 38, 68 after analyzing : 33, 37, 38, 44 RIGHT_BRAIN before analyzing : 34, 36, 39, 67 after analyzing : 34, 38, 39, 45 LEFT_BRAIN before analyzing : 35, 35, 37, 68 after analyzing : 35, 36, 37, 44 OTHER before analyzing : 28, 31, 38, 68 after analyzing : 28, 35, 38, 43 mri_strip_skull: done peeling brain highly tesselated surface with 10242 vertices matching...64 iterations *********************VALIDATION********************* curvature mean = -0.014, std = 0.013 curvature mean = 64.141, std = 7.728 No Rigid alignment: -atlas Mode Off (basic atlas / no registration) before rotation: sse = 5.37, sigma = 9.64 after rotation: sse = 5.37, sigma = 9.64 Localization of inacurate regions: Erosion-Dilation steps the sse mean is 7.10, its var is 15.28 before Erosion-Dilatation 4.38% of inacurate vertices after Erosion-Dilatation 6.60% of inacurate vertices Validation of the shape of the surface done. Scaling of atlas fields onto current surface fields ********FINAL ITERATIVE TEMPLATE DEFORMATION******** Compute Local values csf/gray Fine Segmentation...41 iterations mri_strip_skull: done peeling brain Brain Size = 1322048 voxels, voxel volume = 1.000 mm3 = 1322048 mmm3 = 1322.048 cm3 ****************************** Saving brainmask.auto.mgz done cp brainmask.auto.mgz brainmask.mgz #------------------------------------- #@# EM Registration Fri Apr 5 13:49:26 CEST 2013 /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri mri_em_register -uns 3 -mask brainmask.mgz nu.mgz /usr/local/freesurfer/average/RB_all_2008-03-26.gca transforms/talairach.lta ======= NUMBER OF OPENMP THREADS = 1 ======= aligning to atlas containing skull, setting unknown_nbr_spacing = 3 using MR volume brainmask.mgz to mask input volume... reading 1 input volumes... logging results to talairach.log reading '/usr/local/freesurfer/average/RB_all_2008-03-26.gca'... average std = 6.9 using min determinant for regularization = 4.7 0 singular and 1812 ill-conditioned covariance matrices regularized reading 'nu.mgz'... freeing gibbs priors...done. bounding unknown intensity as < 14.9 or > 790.2 total sample mean = 84.4 (994 zeros) ************************************************ spacing=8, using 2772 sample points, tol=1.00e-05... ************************************************ register_mri: find_optimal_transform find_optimal_transform: nsamples 2772, passno 0, spacing 8 resetting wm mean[0]: 102 --> 107 resetting gm mean[0]: 64 --> 64 input volume #1 is the most T1-like using real data threshold=19.0 skull bounding box = (66, 49, 35) --> (197, 169, 186) using (110, 89, 111) as brain centroid... mean wm in atlas = 107, using box (94,74,92) --> (126, 103,129) to find MRI wm before smoothing, mri peak at 98 after smoothing, mri peak at 97, scaling input intensities by 1.103 scaling channel 0 by 1.10309 initial log_p = -4.4 ************************************************ First Search limited to translation only. ************************************************ max log p = -4.244857 @ (-9.091, 9.091, -9.091) max log p = -4.185814 @ (4.545, 4.545, 4.545) max log p = -4.160345 @ (-2.273, 2.273, -2.273) max log p = -4.120385 @ (1.136, 1.136, 1.136) max log p = -4.116711 @ (0.568, 0.568, -1.705) max log p = -4.115157 @ (-0.284, -0.852, -0.852) Found translation: (-5.4, 16.8, -8.2): log p = -4.115 **************************************** Nine parameter search. iteration 0 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-3.9, old_max_log_p =-4.1 (thresh=-4.1) 1.075 0.000 0.000 -15.313; 0.000 1.194 0.320 -39.396; 0.000 -0.278 1.038 23.312; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 1 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-3.9, old_max_log_p =-3.9 (thresh=-3.9) 1.066 0.150 0.059 -35.975; -0.151 1.223 0.483 -39.835; 0.000 -0.399 0.914 49.220; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 2 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-3.9, old_max_log_p =-3.9 (thresh=-3.9) 1.066 0.150 0.059 -35.975; -0.151 1.223 0.483 -39.835; 0.000 -0.399 0.914 49.220; 0.000 0.000 0.000 1.000; reducing scale to 0.2500 **************************************** Nine parameter search. iteration 3 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-3.8, old_max_log_p =-3.9 (thresh=-3.9) 1.030 0.106 0.042 -24.666; -0.114 1.203 0.475 -39.943; 0.000 -0.422 0.966 46.024; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 4 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-3.8, old_max_log_p =-3.8 (thresh=-3.8) 1.030 0.106 0.042 -24.666; -0.116 1.226 0.484 -42.921; 0.000 -0.422 0.966 46.024; 0.000 0.000 0.000 1.000; reducing scale to 0.0625 **************************************** Nine parameter search. iteration 5 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-3.7, old_max_log_p =-3.8 (thresh=-3.8) 1.032 0.092 0.018 -21.488; -0.099 1.223 0.492 -46.135; 0.018 -0.430 0.961 44.587; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 6 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-3.7, old_max_log_p =-3.7 (thresh=-3.7) 1.029 0.092 0.018 -20.203; -0.099 1.223 0.492 -46.135; 0.018 -0.432 0.964 44.373; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 7 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-3.7, old_max_log_p =-3.7 (thresh=-3.7) 1.029 0.092 0.018 -20.203; -0.099 1.223 0.492 -46.135; 0.018 -0.432 0.964 44.373; 0.000 0.000 0.000 1.000; min search scale 0.025000 reached *********************************************** Computing MAP estimate using 2772 samples... *********************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-05 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.02923 0.09223 0.01810 -20.20338; -0.09881 1.22256 0.49189 -46.13519; 0.01766 -0.43200 0.96423 44.37344; 0.00000 0.00000 0.00000 1.00000; nsamples 2772 Quasinewton: input matrix 1.02923 0.09223 0.01810 -20.20338; -0.09881 1.22256 0.49189 -46.13519; 0.01766 -0.43200 0.96423 44.37344; 0.00000 0.00000 0.00000 1.00000; IFLAG= -1 LINE SEARCH FAILED. SEE DOCUMENTATION OF ROUTINE MCSRCH ERROR RETURN OF LINE SEARCH: INFO= 3 POSSIBLE CAUSES: FUNCTION OR GRADIENT ARE INCORRECT OR INCORRECT TOLERANCESoutof QuasiNewtonEMA: 010: -log(p) = -0.0 tol 0.000010 Resulting transform: 1.029 0.092 0.018 -20.203; -0.099 1.223 0.492 -46.135; 0.018 -0.432 0.964 44.373; 0.000 0.000 0.000 1.000; pass 1, spacing 8: log(p) = -3.7 (old=-4.4) transform before final EM align: 1.029 0.092 0.018 -20.203; -0.099 1.223 0.492 -46.135; 0.018 -0.432 0.964 44.373; 0.000 0.000 0.000 1.000; ************************************************** EM alignment process ... Computing final MAP estimate using 312841 samples. ************************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-07 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.02923 0.09223 0.01810 -20.20338; -0.09881 1.22256 0.49189 -46.13519; 0.01766 -0.43200 0.96423 44.37344; 0.00000 0.00000 0.00000 1.00000; nsamples 312841 Quasinewton: input matrix 1.02923 0.09223 0.01810 -20.20338; -0.09881 1.22256 0.49189 -46.13519; 0.01766 -0.43200 0.96423 44.37344; 0.00000 0.00000 0.00000 1.00000; dfp_em_step_func: 011: -log(p) = 4.1 after pass:transform: ( 1.03, 0.09, 0.02, -20.20) ( -0.10, 1.22, 0.49, -46.14) ( 0.02, -0.43, 0.96, 44.37) IFLAG= -1 LINE SEARCH FAILED. SEE DOCUMENTATION OF ROUTINE MCSRCH ERROR RETURN OF LINE SEARCH: INFO= 3 POSSIBLE CAUSES: FUNCTION OR GRADIENT ARE INCORRECT OR INCORRECT TOLERANCESpass 2 through quasi-newton minimization... IFLAG= -1 LINE SEARCH FAILED. SEE DOCUMENTATION OF ROUTINE MCSRCH ERROR RETURN OF LINE SEARCH: INFO= 6 POSSIBLE CAUSES: FUNCTION OR GRADIENT ARE INCORRECT OR INCORRECT TOLERANCESoutof QuasiNewtonEMA: 013: -log(p) = 4.1 tol 0.000000 final transform: 1.029 0.092 0.018 -20.203; -0.099 1.223 0.492 -46.135; 0.018 -0.432 0.964 44.373; 0.000 0.000 0.000 1.000; writing output transformation to transforms/talairach.lta... registration took 29 minutes and 43 seconds. #-------------------------------------- #@# CA Normalize Fri Apr 5 14:19:10 CEST 2013 /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri mri_ca_normalize -c ctrl_pts.mgz -mask brainmask.mgz nu.mgz /usr/local/freesurfer/average/RB_all_2008-03-26.gca transforms/talairach.lta norm.mgz writing control point volume to ctrl_pts.mgz using MR volume brainmask.mgz to mask input volume... reading 1 input volume reading atlas from '/usr/local/freesurfer/average/RB_all_2008-03-26.gca'... reading transform from 'transforms/talairach.lta'... reading input volume from nu.mgz... resetting wm mean[0]: 102 --> 107 resetting gm mean[0]: 64 --> 64 input volume #1 is the most T1-like using real data threshold=19.0 skull bounding box = (66, 49, 35) --> (198, 169, 186) using (110, 89, 111) as brain centroid... mean wm in atlas = 107, using box (94,74,92) --> (126, 103,129) to find MRI wm before smoothing, mri peak at 98 after smoothing, mri peak at 97, scaling input intensities by 1.103 scaling channel 0 by 1.10309 using 244171 sample points... INFO: compute sample coordinates transform 1.029 0.092 0.018 -20.203; -0.099 1.223 0.492 -46.135; 0.018 -0.432 0.964 44.373; 0.000 0.000 0.000 1.000; INFO: transform used finding control points in Left_Cerebral_White_Matter.... found 41584 control points for structure... bounding box (126, 52, 38) --> (195, 151, 189) Left_Cerebral_White_Matter: limiting intensities to 127.0 --> 201.0 1 of 182 (0.5%) samples deleted finding control points in Right_Cerebral_White_Matter.... found 40735 control points for structure... bounding box (67, 50, 38) --> (133, 142, 189) Right_Cerebral_White_Matter: limiting intensities to 116.0 --> 201.0 0 of 125 (0.0%) samples deleted finding control points in Left_Cerebellum_White_Matter.... found 3012 control points for structure... bounding box (130, 124, 69) --> (175, 161, 118) Left_Cerebellum_White_Matter: limiting intensities to 92.0 --> 201.0 0 of 20 (0.0%) samples deleted finding control points in Right_Cerebellum_White_Matter.... found 2764 control points for structure... bounding box (83, 124, 66) --> (129, 157, 118) Right_Cerebellum_White_Matter: limiting intensities to 93.0 --> 201.0 1 of 20 (5.0%) samples deleted finding control points in Brain_Stem.... found 3520 control points for structure... bounding box (112, 111, 97) --> (145, 164, 127) Brain_Stem: limiting intensities to 84.0 --> 201.0 0 of 38 (0.0%) samples deleted using 385 total control points for intensity normalization... bias field = 0.827 +- 0.059 0 of 383 control points discarded finding control points in Left_Cerebral_White_Matter.... found 41584 control points for structure... bounding box (126, 52, 38) --> (195, 151, 189) Left_Cerebral_White_Matter: limiting intensities to 104.0 --> 166.0 199 of 399 (49.9%) samples deleted finding control points in Right_Cerebral_White_Matter.... found 40735 control points for structure... bounding box (67, 50, 38) --> (133, 142, 189) Right_Cerebral_White_Matter: limiting intensities to 104.0 --> 166.0 131 of 268 (48.9%) samples deleted finding control points in Left_Cerebellum_White_Matter.... found 3012 control points for structure... bounding box (130, 124, 69) --> (175, 161, 118) Left_Cerebellum_White_Matter: limiting intensities to 75.0 --> 166.0 0 of 64 (0.0%) samples deleted finding control points in Right_Cerebellum_White_Matter.... found 2764 control points for structure... bounding box (83, 124, 66) --> (129, 157, 118) Right_Cerebellum_White_Matter: limiting intensities to 78.0 --> 166.0 0 of 57 (0.0%) samples deleted finding control points in Brain_Stem.... found 3520 control points for structure... bounding box (112, 111, 97) --> (145, 164, 127) Brain_Stem: limiting intensities to 79.0 --> 166.0 40 of 130 (30.8%) samples deleted using 918 total control points for intensity normalization... bias field = 1.028 +- 0.056 0 of 548 control points discarded finding control points in Left_Cerebral_White_Matter.... found 41584 control points for structure... bounding box (126, 52, 38) --> (195, 151, 189) Left_Cerebral_White_Matter: limiting intensities to 95.0 --> 169.0 141 of 591 (23.9%) samples deleted finding control points in Right_Cerebral_White_Matter.... found 40735 control points for structure... bounding box (67, 50, 38) --> (133, 142, 189) Right_Cerebral_White_Matter: limiting intensities to 96.0 --> 169.0 63 of 358 (17.6%) samples deleted finding control points in Left_Cerebellum_White_Matter.... found 3012 control points for structure... bounding box (130, 124, 69) --> (175, 161, 118) Left_Cerebellum_White_Matter: limiting intensities to 76.0 --> 169.0 0 of 89 (0.0%) samples deleted finding control points in Right_Cerebellum_White_Matter.... found 2764 control points for structure... bounding box (83, 124, 66) --> (129, 157, 118) Right_Cerebellum_White_Matter: limiting intensities to 77.0 --> 169.0 0 of 41 (0.0%) samples deleted finding control points in Brain_Stem.... found 3520 control points for structure... bounding box (112, 111, 97) --> (145, 164, 127) Brain_Stem: limiting intensities to 72.0 --> 169.0 0 of 171 (0.0%) samples deleted using 1250 total control points for intensity normalization... bias field = 1.026 +- 0.053 0 of 1046 control points discarded writing normalized volume to norm.mgz... writing control points to ctrl_pts.mgz freeing GCA...done. normalization took 1 minutes and 53 seconds. #-------------------------------------- #@# CA Reg Fri Apr 5 14:21:02 CEST 2013 /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri mri_ca_register -nobigventricles -T transforms/talairach.lta -align-after -mask brainmask.mgz norm.mgz /usr/local/freesurfer/average/RB_all_2008-03-26.gca transforms/talairach.m3z not handling expanded ventricles... using previously computed transform transforms/talairach.lta renormalizing sequences with structure alignment, equivalent to: -renormalize -regularize_mean 0.500 -regularize 0.500 using MR volume brainmask.mgz to mask input volume... reading 1 input volumes... logging results to talairach.log ======= NUMBER OF OPENMP THREADS = 1 ======= reading input volume 'norm.mgz'... reading GCA '/usr/local/freesurfer/average/RB_all_2008-03-26.gca'... label assignment complete, 0 changed (0.00%) det(m_affine) = 1.44 (predicted orig area = 5.5) label assignment complete, 0 changed (0.00%) freeing gibbs priors...done. average std[0] = 5.0 **************** pass 1 of 1 ************************ setting smoothness coefficient to 0.039 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.847, neg=0, invalid=96777 0001: dt=129.472000, rms=0.769 (9.224%), neg=0, invalid=96777 0002: dt=295.936000, rms=0.735 (4.418%), neg=0, invalid=96777 0003: dt=129.472000, rms=0.726 (1.129%), neg=0, invalid=96777 0004: dt=295.936000, rms=0.719 (0.995%), neg=0, invalid=96777 0005: dt=92.480000, rms=0.715 (0.572%), neg=0, invalid=96777 0006: dt=517.888000, rms=0.707 (1.156%), neg=0, invalid=96777 0007: dt=32.368000, rms=0.704 (0.334%), neg=0, invalid=96777 0008: dt=32.368000, rms=0.704 (0.098%), neg=0, invalid=96777 0009: dt=32.368000, rms=0.703 (0.043%), neg=0, invalid=96777 0010: dt=32.368000, rms=0.703 (0.049%), neg=0, invalid=96777 0011: dt=32.368000, rms=0.703 (0.075%), neg=0, invalid=96777 0012: dt=32.368000, rms=0.702 (0.153%), neg=0, invalid=96777 0013: dt=32.368000, rms=0.700 (0.232%), neg=0, invalid=96777 0014: dt=32.368000, rms=0.698 (0.275%), neg=0, invalid=96777 0015: dt=32.368000, rms=0.696 (0.258%), neg=0, invalid=96777 0016: dt=32.368000, rms=0.695 (0.228%), neg=0, invalid=96777 0017: dt=32.368000, rms=0.693 (0.206%), neg=0, invalid=96777 0018: dt=32.368000, rms=0.692 (0.202%), neg=0, invalid=96777 0019: dt=32.368000, rms=0.690 (0.198%), neg=0, invalid=96777 0020: dt=32.368000, rms=0.689 (0.203%), neg=0, invalid=96777 0021: dt=32.368000, rms=0.688 (0.212%), neg=0, invalid=96777 0022: dt=32.368000, rms=0.686 (0.226%), neg=0, invalid=96777 0023: dt=32.368000, rms=0.684 (0.226%), neg=0, invalid=96777 0024: dt=32.368000, rms=0.683 (0.205%), neg=0, invalid=96777 0025: dt=32.368000, rms=0.682 (0.174%), neg=0, invalid=96777 0026: dt=32.368000, rms=0.681 (0.146%), neg=0, invalid=96777 0027: dt=32.368000, rms=0.680 (0.127%), neg=0, invalid=96777 0028: dt=32.368000, rms=0.679 (0.130%), neg=0, invalid=96777 0029: dt=32.368000, rms=0.678 (0.140%), neg=0, invalid=96777 0030: dt=32.368000, rms=0.677 (0.144%), neg=0, invalid=96777 0031: dt=32.368000, rms=0.676 (0.139%), neg=0, invalid=96777 0032: dt=32.368000, rms=0.675 (0.129%), neg=0, invalid=96777 0033: dt=32.368000, rms=0.675 (0.114%), neg=0, invalid=96777 0034: dt=32.368000, rms=0.674 (0.101%), neg=0, invalid=96777 0035: dt=887.808000, rms=0.673 (0.106%), neg=0, invalid=96777 0036: dt=129.472000, rms=0.671 (0.333%), neg=0, invalid=96777 0037: dt=0.027094, rms=0.671 (-0.007%), neg=0, invalid=96777 0038: dt=0.027094, rms=0.671 (0.000%), neg=0, invalid=96777 0039: dt=0.027094, rms=0.671 (-0.000%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.671, neg=0, invalid=96777 0040: dt=32.368000, rms=0.671 (0.024%), neg=0, invalid=96777 0041: dt=32.368000, rms=0.671 (0.019%), neg=0, invalid=96777 0042: dt=32.368000, rms=0.671 (0.019%), neg=0, invalid=96777 0043: dt=32.368000, rms=0.670 (0.030%), neg=0, invalid=96777 0044: dt=32.368000, rms=0.670 (0.041%), neg=0, invalid=96777 0045: dt=32.368000, rms=0.670 (0.060%), neg=0, invalid=96777 0046: dt=32.368000, rms=0.669 (0.092%), neg=0, invalid=96777 0047: dt=32.368000, rms=0.668 (0.107%), neg=0, invalid=96777 0048: dt=32.368000, rms=0.668 (0.105%), neg=0, invalid=96777 0049: dt=32.368000, rms=0.667 (0.093%), neg=0, invalid=96777 setting smoothness coefficient to 0.154 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.671, neg=0, invalid=96777 0050: dt=145.152000, rms=0.655 (2.390%), neg=0, invalid=96777 0051: dt=82.944000, rms=0.645 (1.612%), neg=0, invalid=96777 0052: dt=15.626076, rms=0.641 (0.576%), neg=0, invalid=96777 0053: dt=36.288000, rms=0.639 (0.273%), neg=0, invalid=96777 0054: dt=103.680000, rms=0.634 (0.781%), neg=0, invalid=96777 0055: dt=15.552000, rms=0.632 (0.405%), neg=0, invalid=96777 0056: dt=36.288000, rms=0.630 (0.197%), neg=0, invalid=96777 0057: dt=36.288000, rms=0.628 (0.353%), neg=0, invalid=96777 0058: dt=36.288000, rms=0.625 (0.427%), neg=0, invalid=96777 0059: dt=36.288000, rms=0.623 (0.477%), neg=0, invalid=96777 0060: dt=36.288000, rms=0.619 (0.587%), neg=0, invalid=96777 0061: dt=36.288000, rms=0.614 (0.706%), neg=0, invalid=96777 0062: dt=36.288000, rms=0.611 (0.589%), neg=0, invalid=96777 0063: dt=36.288000, rms=0.608 (0.491%), neg=0, invalid=96777 0064: dt=36.288000, rms=0.605 (0.426%), neg=0, invalid=96777 0065: dt=36.288000, rms=0.603 (0.450%), neg=0, invalid=96777 0066: dt=36.288000, rms=0.600 (0.351%), neg=0, invalid=96777 0067: dt=36.288000, rms=0.599 (0.295%), neg=0, invalid=96777 0068: dt=36.288000, rms=0.597 (0.268%), neg=0, invalid=96777 0069: dt=36.288000, rms=0.595 (0.313%), neg=0, invalid=96777 0070: dt=36.288000, rms=0.594 (0.244%), neg=0, invalid=96777 0071: dt=36.288000, rms=0.592 (0.223%), neg=0, invalid=96777 0072: dt=36.288000, rms=0.591 (0.197%), neg=0, invalid=96777 0073: dt=36.288000, rms=0.590 (0.241%), neg=0, invalid=96777 0074: dt=36.288000, rms=0.589 (0.187%), neg=0, invalid=96777 0075: dt=36.288000, rms=0.588 (0.166%), neg=0, invalid=96777 0076: dt=36.288000, rms=0.587 (0.141%), neg=0, invalid=96777 0077: dt=36.288000, rms=0.586 (0.173%), neg=0, invalid=96777 0078: dt=36.288000, rms=0.585 (0.150%), neg=0, invalid=96777 0079: dt=36.288000, rms=0.584 (0.126%), neg=0, invalid=96777 0080: dt=36.288000, rms=0.584 (0.104%), neg=0, invalid=96777 0081: dt=36.288000, rms=0.583 (0.116%), neg=0, invalid=96777 0082: dt=36.288000, rms=0.582 (0.092%), neg=0, invalid=96777 0083: dt=20.736000, rms=0.582 (0.003%), neg=0, invalid=96777 0084: dt=20.736000, rms=0.582 (0.010%), neg=0, invalid=96777 0085: dt=20.736000, rms=0.582 (0.011%), neg=0, invalid=96777 0086: dt=20.736000, rms=0.582 (0.016%), neg=0, invalid=96777 0087: dt=20.736000, rms=0.582 (0.017%), neg=0, invalid=96777 0088: dt=20.736000, rms=0.582 (0.015%), neg=0, invalid=96777 0089: dt=20.736000, rms=0.582 (0.018%), neg=0, invalid=96777 0090: dt=20.736000, rms=0.582 (0.017%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.582, neg=0, invalid=96777 0091: dt=124.416000, rms=0.580 (0.376%), neg=0, invalid=96777 0092: dt=36.288000, rms=0.579 (0.053%), neg=0, invalid=96777 0093: dt=36.288000, rms=0.579 (0.003%), neg=0, invalid=96777 0094: dt=36.288000, rms=0.579 (0.022%), neg=0, invalid=96777 0095: dt=36.288000, rms=0.579 (0.027%), neg=0, invalid=96777 0096: dt=36.288000, rms=0.579 (0.017%), neg=0, invalid=96777 0097: dt=36.288000, rms=0.579 (0.017%), neg=0, invalid=96777 0098: dt=36.288000, rms=0.579 (0.012%), neg=0, invalid=96777 0099: dt=145.152000, rms=0.579 (0.047%), neg=0, invalid=96777 0100: dt=9.072000, rms=0.579 (0.004%), neg=0, invalid=96777 setting smoothness coefficient to 0.588 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.605, neg=0, invalid=96777 0101: dt=0.043750, rms=0.605 (0.003%), neg=0, invalid=96777 0102: dt=0.025000, rms=0.605 (0.000%), neg=0, invalid=96777 0103: dt=0.025000, rms=0.605 (-0.000%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.605, neg=0, invalid=96777 0104: dt=0.000000, rms=0.605 (0.000%), neg=0, invalid=96777 setting smoothness coefficient to 2.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.683, neg=0, invalid=96777 0105: dt=4.719231, rms=0.661 (3.224%), neg=0, invalid=96777 0106: dt=2.511628, rms=0.659 (0.158%), neg=0, invalid=96777 0107: dt=2.511628, rms=0.659 (-0.033%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.659, neg=0, invalid=96777 0108: dt=0.000000, rms=0.659 (0.000%), neg=0, invalid=96777 setting smoothness coefficient to 5.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.734, neg=0, invalid=96777 0109: dt=1.291913, rms=0.727 (0.886%), neg=0, invalid=96777 0110: dt=2.005025, rms=0.721 (0.850%), neg=0, invalid=96777 0111: dt=0.454545, rms=0.720 (0.070%), neg=0, invalid=96777 0112: dt=0.454545, rms=0.720 (0.032%), neg=0, invalid=96777 0113: dt=0.454545, rms=0.720 (0.016%), neg=0, invalid=96777 0114: dt=0.454545, rms=0.720 (-0.022%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.720, neg=0, invalid=96777 0115: dt=1.536000, rms=0.719 (0.220%), neg=0, invalid=96777 0116: dt=0.000000, rms=0.719 (0.001%), neg=0, invalid=96777 0117: dt=0.100000, rms=0.719 (-0.005%), neg=0, invalid=96777 resetting metric properties... setting smoothness coefficient to 10.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.668, neg=0, invalid=96777 0118: dt=0.448000, rms=0.650 (2.666%), neg=0, invalid=96777 0119: dt=0.000000, rms=0.650 (0.007%), neg=0, invalid=96777 0120: dt=0.050000, rms=0.650 (-0.385%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.650, neg=0, invalid=96777 0121: dt=0.000000, rms=0.650 (0.000%), neg=0, invalid=96777 renormalizing by structure alignment.... renormalizing input #0 gca peak = 0.11725 (24) mri peak = 0.14249 (20) Left_Lateral_Ventricle (4): linear fit = 0.73 x + 0.0 (1933 voxels, overlap=0.170) Left_Lateral_Ventricle (4): linear fit = 0.73 x + 0.0 (1933 voxels, peak = 17), gca=17.4 gca peak = 0.14022 (22) mri peak = 0.11315 (18) Right_Lateral_Ventricle (43): linear fit = 0.75 x + 0.0 (1088 voxels, overlap=0.472) Right_Lateral_Ventricle (43): linear fit = 0.75 x + 0.0 (1088 voxels, peak = 17), gca=16.6 gca peak = 0.24234 (100) mri peak = 0.10086 (98) Right_Pallidum (52): linear fit = 0.96 x + 0.0 (347 voxels, overlap=0.670) Right_Pallidum (52): linear fit = 0.96 x + 0.0 (347 voxels, peak = 96), gca=96.5 gca peak = 0.19192 (97) mri peak = 0.08040 (94) Left_Pallidum (13): linear fit = 0.95 x + 0.0 (296 voxels, overlap=0.605) Left_Pallidum (13): linear fit = 0.95 x + 0.0 (296 voxels, peak = 93), gca=92.6 gca peak = 0.24007 (63) mri peak = 0.13100 (70) Right_Hippocampus (53): linear fit = 1.09 x + 0.0 (766 voxels, overlap=0.280) Right_Hippocampus (53): linear fit = 1.09 x + 0.0 (766 voxels, peak = 68), gca=68.4 gca peak = 0.29892 (64) mri peak = 0.13182 (69) Left_Hippocampus (17): linear fit = 1.05 x + 0.0 (679 voxels, overlap=0.987) Left_Hippocampus (17): linear fit = 1.05 x + 0.0 (679 voxels, peak = 68), gca=67.5 gca peak = 0.12541 (104) mri peak = 0.04897 (98) Right_Cerebral_White_Matter (41): linear fit = 1.01 x + 0.0 (59708 voxels, overlap=0.995) Right_Cerebral_White_Matter (41): linear fit = 1.01 x + 0.0 (59708 voxels, peak = 106), gca=105.6 gca peak = 0.13686 (104) mri peak = 0.04469 (97) Left_Cerebral_White_Matter (2): linear fit = 1.03 x + 0.0 (60670 voxels, overlap=0.992) Left_Cerebral_White_Matter (2): linear fit = 1.03 x + 0.0 (60670 voxels, peak = 108), gca=107.6 gca peak = 0.11691 (63) mri peak = 0.03500 (72) Left_Cerebral_Cortex (3): linear fit = 1.16 x + 0.0 (17664 voxels, overlap=0.389) Left_Cerebral_Cortex (3): linear fit = 1.16 x + 0.0 (17664 voxels, peak = 73), gca=73.4 gca peak = 0.13270 (63) mri peak = 0.03314 (87) Right_Cerebral_Cortex (42): linear fit = 1.30 x + 0.0 (18026 voxels, overlap=0.004) Right_Cerebral_Cortex (42): linear fit = 1.30 x + 0.0 (18026 voxels, peak = 82), gca=82.2 gca peak = 0.15182 (70) mri peak = 0.09107 (77) Right_Caudate (50): linear fit = 1.08 x + 0.0 (197 voxels, overlap=0.443) Right_Caudate (50): linear fit = 1.08 x + 0.0 (197 voxels, peak = 75), gca=75.2 gca peak = 0.14251 (76) mri peak = 0.15668 (78) Left_Caudate (11): linear fit = 0.99 x + 0.0 (646 voxels, overlap=0.758) Left_Caudate (11): linear fit = 0.99 x + 0.0 (646 voxels, peak = 75), gca=74.9 gca peak = 0.12116 (60) mri peak = 0.03680 (63) Left_Cerebellum_Cortex (8): linear fit = 1.15 x + 0.0 (17963 voxels, overlap=0.487) Left_Cerebellum_Cortex (8): linear fit = 1.15 x + 0.0 (17963 voxels, peak = 69), gca=69.3 gca peak = 0.12723 (61) mri peak = 0.04288 (69) Right_Cerebellum_Cortex (47): linear fit = 1.15 x + 0.0 (19660 voxels, overlap=0.511) Right_Cerebellum_Cortex (47): linear fit = 1.15 x + 0.0 (19660 voxels, peak = 70), gca=70.5 gca peak = 0.22684 (88) mri peak = 0.09122 (89) Left_Cerebellum_White_Matter (7): linear fit = 1.01 x + 0.0 (8137 voxels, overlap=0.948) Left_Cerebellum_White_Matter (7): linear fit = 1.01 x + 0.0 (8137 voxels, peak = 89), gca=89.3 gca peak = 0.21067 (87) mri peak = 0.11403 (90) Right_Cerebellum_White_Matter (46): linear fit = 1.03 x + 0.0 (6772 voxels, overlap=0.618) Right_Cerebellum_White_Matter (46): linear fit = 1.03 x + 0.0 (6772 voxels, peak = 90), gca=90.0 gca peak = 0.25455 (62) mri peak = 0.10754 (69) Left_Amygdala (18): linear fit = 1.09 x + 0.0 (264 voxels, overlap=0.155) Left_Amygdala (18): linear fit = 1.09 x + 0.0 (264 voxels, peak = 67), gca=67.3 gca peak = 0.39668 (62) mri peak = 0.15854 (69) Right_Amygdala (54): linear fit = 1.11 x + 0.0 (246 voxels, overlap=0.074) Right_Amygdala (54): linear fit = 1.11 x + 0.0 (246 voxels, peak = 69), gca=68.5 gca peak = 0.10129 (93) mri peak = 0.07448 (89) Left_Thalamus_Proper (10): linear fit = 0.94 x + 0.0 (4189 voxels, overlap=0.817) Left_Thalamus_Proper (10): linear fit = 0.94 x + 0.0 (4189 voxels, peak = 88), gca=87.9 gca peak = 0.12071 (89) mri peak = 0.07697 (90) Right_Thalamus_Proper (49): linear fit = 0.99 x + 0.0 (3205 voxels, overlap=0.877) Right_Thalamus_Proper (49): linear fit = 0.99 x + 0.0 (3205 voxels, peak = 88), gca=87.7 gca peak = 0.13716 (82) mri peak = 0.06532 (85) Left_Putamen (12): linear fit = 0.99 x + 0.0 (2003 voxels, overlap=1.000) Left_Putamen (12): linear fit = 0.99 x + 0.0 (2003 voxels, peak = 81), gca=80.8 gca peak = 0.15214 (84) mri peak = 0.09672 (79) Right_Putamen (51): linear fit = 0.99 x + 0.0 (2179 voxels, overlap=0.991) Right_Putamen (51): linear fit = 0.99 x + 0.0 (2179 voxels, peak = 83), gca=82.7 gca peak = 0.08983 (85) mri peak = 0.11105 (88) Brain_Stem (16): linear fit = 1.03 x + 0.0 (10033 voxels, overlap=0.777) Brain_Stem (16): linear fit = 1.03 x + 0.0 (10033 voxels, peak = 88), gca=88.0 gca peak = 0.11809 (92) mri peak = 0.10448 (93) Right_VentralDC (60): linear fit = 1.01 x + 0.0 (652 voxels, overlap=0.705) Right_VentralDC (60): linear fit = 1.01 x + 0.0 (652 voxels, peak = 93), gca=93.4 gca peak = 0.12914 (94) mri peak = 0.13190 (91) Left_VentralDC (28): linear fit = 0.95 x + 0.0 (772 voxels, overlap=0.696) Left_VentralDC (28): linear fit = 0.95 x + 0.0 (772 voxels, peak = 90), gca=89.8 gca peak = 0.21100 (36) mri peak = 0.60000 (22) gca peak = 0.13542 (27) mri peak = 0.26686 (22) Fourth_Ventricle (15): linear fit = 0.76 x + 0.0 (128 voxels, overlap=0.316) Fourth_Ventricle (15): linear fit = 0.76 x + 0.0 (128 voxels, peak = 21), gca=20.7 gca peak Unknown = 0.94427 ( 0) gca peak Left_Inf_Lat_Vent = 0.21802 (40) gca peak Third_Ventricle = 0.21100 (36) gca peak CSF = 0.17123 (45) gca peak Left_Accumbens_area = 0.25875 (69) gca peak Left_undetermined = 0.96240 (36) gca peak Left_vessel = 0.33262 (65) gca peak Left_choroid_plexus = 0.09846 (46) gca peak Right_Inf_Lat_Vent = 0.28113 (34) gca peak Right_Accumbens_area = 0.27120 (72) gca peak Right_vessel = 0.61915 (60) gca peak Right_choroid_plexus = 0.12775 (51) gca peak Fifth_Ventricle = 0.45329 (44) gca peak WM_hypointensities = 0.11729 (81) gca peak non_WM_hypointensities = 0.10912 (56) gca peak Optic_Chiasm = 0.33287 (75) label assignment complete, 0 changed (0.00%) not using caudate to estimate GM means estimating mean gm scale to be 1.13 x + 0.0 estimating mean wm scale to be 1.02 x + 0.0 estimating mean csf scale to be 0.75 x + 0.0 saving intensity scales to talairach.label_intensities.txt **************** pass 1 of 1 ************************ setting smoothness coefficient to 0.008 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.684, neg=0, invalid=96777 0122: dt=73.984000, rms=0.672 (1.709%), neg=0, invalid=96777 0123: dt=92.480000, rms=0.670 (0.263%), neg=0, invalid=96777 0124: dt=129.472000, rms=0.668 (0.370%), neg=0, invalid=96777 0125: dt=295.936000, rms=0.666 (0.301%), neg=0, invalid=96777 0126: dt=73.984000, rms=0.664 (0.223%), neg=0, invalid=96777 0127: dt=129.472000, rms=0.663 (0.142%), neg=0, invalid=96777 0128: dt=129.472000, rms=0.662 (0.158%), neg=0, invalid=96777 0129: dt=92.480000, rms=0.662 (0.101%), neg=0, invalid=96777 0130: dt=129.472000, rms=0.661 (0.143%), neg=0, invalid=96777 0131: dt=92.480000, rms=0.660 (0.087%), neg=0, invalid=96777 0132: dt=129.472000, rms=0.659 (0.128%), neg=0, invalid=96777 0133: dt=92.480000, rms=0.659 (0.074%), neg=0, invalid=96777 0134: dt=129.472000, rms=0.658 (0.113%), neg=0, invalid=96777 0135: dt=110.976000, rms=0.658 (0.069%), neg=0, invalid=96777 0136: dt=110.976000, rms=0.657 (0.095%), neg=0, invalid=96777 0137: dt=110.976000, rms=0.656 (0.070%), neg=0, invalid=96777 0138: dt=110.976000, rms=0.656 (0.085%), neg=0, invalid=96777 0139: dt=92.480000, rms=0.656 (0.063%), neg=0, invalid=96777 0140: dt=129.472000, rms=0.655 (0.087%), neg=0, invalid=96777 0141: dt=110.976000, rms=0.655 (0.061%), neg=0, invalid=96777 0142: dt=129.472000, rms=0.654 (0.080%), neg=0, invalid=96777 0143: dt=92.480000, rms=0.654 (0.059%), neg=0, invalid=96777 0144: dt=129.472000, rms=0.653 (0.075%), neg=0, invalid=96777 0145: dt=110.976000, rms=0.653 (0.056%), neg=0, invalid=96777 0146: dt=110.976000, rms=0.652 (0.063%), neg=0, invalid=96777 0147: dt=110.976000, rms=0.652 (0.050%), neg=0, invalid=96777 0148: dt=110.976000, rms=0.652 (0.064%), neg=0, invalid=96777 0149: dt=92.480000, rms=0.651 (0.046%), neg=0, invalid=96777 0150: dt=92.480000, rms=0.651 (0.054%), neg=0, invalid=96777 0151: dt=92.480000, rms=0.651 (0.073%), neg=0, invalid=96777 0152: dt=92.480000, rms=0.650 (0.117%), neg=0, invalid=96777 0153: dt=92.480000, rms=0.649 (0.134%), neg=0, invalid=96777 0154: dt=92.480000, rms=0.648 (0.162%), neg=0, invalid=96777 0155: dt=92.480000, rms=0.647 (0.142%), neg=0, invalid=96777 0156: dt=92.480000, rms=0.646 (0.167%), neg=0, invalid=96777 0157: dt=92.480000, rms=0.645 (0.167%), neg=0, invalid=96777 0158: dt=92.480000, rms=0.644 (0.158%), neg=0, invalid=96777 0159: dt=92.480000, rms=0.643 (0.129%), neg=0, invalid=96777 0160: dt=92.480000, rms=0.642 (0.139%), neg=0, invalid=96777 0161: dt=92.480000, rms=0.641 (0.146%), neg=0, invalid=96777 0162: dt=92.480000, rms=0.640 (0.133%), neg=0, invalid=96777 0163: dt=92.480000, rms=0.639 (0.113%), neg=0, invalid=96777 0164: dt=92.480000, rms=0.639 (0.116%), neg=0, invalid=96777 0165: dt=92.480000, rms=0.638 (0.134%), neg=0, invalid=96777 0166: dt=92.480000, rms=0.637 (0.133%), neg=0, invalid=96777 0167: dt=92.480000, rms=0.636 (0.136%), neg=0, invalid=96777 0168: dt=92.480000, rms=0.635 (0.141%), neg=0, invalid=96777 0169: dt=92.480000, rms=0.634 (0.150%), neg=0, invalid=96777 0170: dt=92.480000, rms=0.633 (0.152%), neg=0, invalid=96777 0171: dt=92.480000, rms=0.632 (0.150%), neg=0, invalid=96777 0172: dt=92.480000, rms=0.631 (0.150%), neg=0, invalid=96777 0173: dt=92.480000, rms=0.631 (0.150%), neg=0, invalid=96777 0174: dt=92.480000, rms=0.629 (0.166%), neg=0, invalid=96777 0175: dt=92.480000, rms=0.628 (0.156%), neg=0, invalid=96777 0176: dt=92.480000, rms=0.628 (0.134%), neg=0, invalid=96777 0177: dt=92.480000, rms=0.627 (0.125%), neg=0, invalid=96777 0178: dt=92.480000, rms=0.626 (0.123%), neg=0, invalid=96777 0179: dt=92.480000, rms=0.625 (0.118%), neg=0, invalid=96777 0180: dt=92.480000, rms=0.625 (0.112%), neg=0, invalid=96777 0181: dt=92.480000, rms=0.624 (0.107%), neg=0, invalid=96777 0182: dt=92.480000, rms=0.623 (0.108%), neg=0, invalid=96777 0183: dt=92.480000, rms=0.623 (0.097%), neg=0, invalid=96777 0184: dt=92.480000, rms=0.622 (0.091%), neg=0, invalid=96777 0185: dt=92.480000, rms=0.622 (0.087%), neg=0, invalid=96777 0186: dt=92.480000, rms=0.621 (0.095%), neg=0, invalid=96777 0187: dt=92.480000, rms=0.620 (0.091%), neg=0, invalid=96777 0188: dt=92.480000, rms=0.620 (0.089%), neg=0, invalid=96777 0189: dt=92.480000, rms=0.619 (0.069%), neg=0, invalid=96777 0190: dt=92.480000, rms=0.619 (0.075%), neg=0, invalid=96777 0191: dt=92.480000, rms=0.619 (0.070%), neg=0, invalid=96777 0192: dt=92.480000, rms=0.618 (0.068%), neg=0, invalid=96777 0193: dt=92.480000, rms=0.618 (0.064%), neg=0, invalid=96777 0194: dt=92.480000, rms=0.617 (0.064%), neg=0, invalid=96777 0195: dt=92.480000, rms=0.617 (0.062%), neg=0, invalid=96777 0196: dt=92.480000, rms=0.617 (0.047%), neg=0, invalid=96777 0197: dt=92.480000, rms=0.616 (0.051%), neg=0, invalid=96777 0198: dt=92.480000, rms=0.616 (0.050%), neg=0, invalid=96777 0199: dt=92.480000, rms=0.616 (0.042%), neg=0, invalid=96777 0200: dt=92.480000, rms=0.616 (0.041%), neg=0, invalid=96777 0201: dt=92.480000, rms=0.615 (0.036%), neg=0, invalid=96777 0202: dt=92.480000, rms=0.615 (0.036%), neg=0, invalid=96777 0203: dt=92.480000, rms=0.615 (0.038%), neg=0, invalid=96777 0204: dt=92.480000, rms=0.615 (0.032%), neg=0, invalid=96777 0205: dt=92.480000, rms=0.615 (0.024%), neg=0, invalid=96777 0206: dt=92.480000, rms=0.614 (0.024%), neg=0, invalid=96777 0207: dt=92.480000, rms=0.614 (0.035%), neg=0, invalid=96777 0208: dt=92.480000, rms=0.614 (0.028%), neg=0, invalid=96777 0209: dt=92.480000, rms=0.614 (0.019%), neg=0, invalid=96777 0210: dt=92.480000, rms=0.614 (0.016%), neg=0, invalid=96777 0211: dt=129.472000, rms=0.614 (0.019%), neg=0, invalid=96777 0212: dt=23.120000, rms=0.614 (0.002%), neg=0, invalid=96777 0213: dt=23.120000, rms=0.614 (-0.000%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.614, neg=0, invalid=96777 0214: dt=221.952000, rms=0.612 (0.303%), neg=0, invalid=96777 0215: dt=129.472000, rms=0.611 (0.122%), neg=0, invalid=96777 0216: dt=32.368000, rms=0.611 (0.007%), neg=0, invalid=96777 0217: dt=32.368000, rms=0.611 (0.009%), neg=0, invalid=96777 0218: dt=32.368000, rms=0.611 (0.012%), neg=0, invalid=96777 0219: dt=32.368000, rms=0.611 (0.018%), neg=0, invalid=96777 0220: dt=32.368000, rms=0.611 (0.029%), neg=0, invalid=96777 0221: dt=32.368000, rms=0.610 (0.040%), neg=0, invalid=96777 0222: dt=32.368000, rms=0.610 (0.043%), neg=0, invalid=96777 0223: dt=32.368000, rms=0.610 (0.040%), neg=0, invalid=96777 0224: dt=32.368000, rms=0.610 (0.034%), neg=0, invalid=96777 0225: dt=32.368000, rms=0.609 (0.029%), neg=0, invalid=96777 0226: dt=32.368000, rms=0.609 (0.027%), neg=0, invalid=96777 0227: dt=32.368000, rms=0.609 (0.028%), neg=0, invalid=96777 0228: dt=32.368000, rms=0.609 (0.030%), neg=0, invalid=96777 0229: dt=32.368000, rms=0.609 (0.032%), neg=0, invalid=96777 0230: dt=32.368000, rms=0.609 (0.031%), neg=0, invalid=96777 0231: dt=32.368000, rms=0.608 (0.029%), neg=0, invalid=96777 0232: dt=32.368000, rms=0.608 (0.027%), neg=0, invalid=96777 0233: dt=32.368000, rms=0.608 (0.024%), neg=0, invalid=96777 0234: dt=32.368000, rms=0.608 (0.022%), neg=0, invalid=96777 0235: dt=110.976000, rms=0.608 (0.004%), neg=0, invalid=96777 0236: dt=110.976000, rms=0.608 (0.008%), neg=0, invalid=96777 0237: dt=110.976000, rms=0.608 (0.010%), neg=0, invalid=96777 0238: dt=110.976000, rms=0.608 (0.006%), neg=0, invalid=96777 0239: dt=110.976000, rms=0.608 (0.035%), neg=0, invalid=96777 0240: dt=110.976000, rms=0.607 (0.024%), neg=0, invalid=96777 0241: dt=110.976000, rms=0.607 (0.013%), neg=0, invalid=96777 0242: dt=129.472000, rms=0.607 (0.018%), neg=0, invalid=96777 0243: dt=13.872000, rms=0.607 (0.002%), neg=0, invalid=96777 0244: dt=13.872000, rms=0.607 (0.001%), neg=0, invalid=96777 0245: dt=13.872000, rms=0.607 (-0.001%), neg=0, invalid=96777 setting smoothness coefficient to 0.031 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.609, neg=0, invalid=96777 0246: dt=36.288000, rms=0.608 (0.304%), neg=0, invalid=96777 0247: dt=36.288000, rms=0.606 (0.240%), neg=0, invalid=96777 0248: dt=331.776000, rms=0.599 (1.102%), neg=0, invalid=96777 0249: dt=25.920000, rms=0.597 (0.414%), neg=0, invalid=96777 0250: dt=36.288000, rms=0.594 (0.455%), neg=0, invalid=96777 0251: dt=36.288000, rms=0.593 (0.217%), neg=0, invalid=96777 0252: dt=31.104000, rms=0.591 (0.248%), neg=0, invalid=96777 0253: dt=36.288000, rms=0.590 (0.187%), neg=0, invalid=96777 0254: dt=36.288000, rms=0.589 (0.216%), neg=0, invalid=96777 0255: dt=31.104000, rms=0.588 (0.150%), neg=0, invalid=96777 0256: dt=82.944000, rms=0.586 (0.291%), neg=0, invalid=96777 0257: dt=25.920000, rms=0.585 (0.170%), neg=0, invalid=96777 0258: dt=82.944000, rms=0.584 (0.260%), neg=0, invalid=96777 0259: dt=25.920000, rms=0.583 (0.148%), neg=0, invalid=96777 0260: dt=145.152000, rms=0.581 (0.324%), neg=0, invalid=96777 0261: dt=20.736000, rms=0.580 (0.212%), neg=0, invalid=96777 0262: dt=145.152000, rms=0.577 (0.431%), neg=0, invalid=96777 0263: dt=36.288000, rms=0.577 (0.096%), neg=0, invalid=96777 0264: dt=36.288000, rms=0.576 (0.121%), neg=0, invalid=96777 0265: dt=103.680000, rms=0.575 (0.149%), neg=0, invalid=96777 0266: dt=20.736000, rms=0.575 (0.141%), neg=0, invalid=96777 0267: dt=36.288000, rms=0.574 (0.095%), neg=0, invalid=96777 0268: dt=82.944000, rms=0.573 (0.128%), neg=0, invalid=96777 0269: dt=25.920000, rms=0.573 (0.121%), neg=0, invalid=96777 0270: dt=36.288000, rms=0.572 (0.095%), neg=0, invalid=96777 0271: dt=36.288000, rms=0.572 (0.070%), neg=0, invalid=96777 0272: dt=9.072000, rms=0.571 (0.025%), neg=0, invalid=96777 0273: dt=9.072000, rms=0.571 (0.023%), neg=0, invalid=96777 0274: dt=2.268000, rms=0.571 (0.005%), neg=0, invalid=96777 0275: dt=1.134000, rms=0.571 (0.002%), neg=0, invalid=96777 0276: dt=0.486000, rms=0.571 (0.001%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.571, neg=0, invalid=96777 0277: dt=145.152000, rms=0.567 (0.676%), neg=0, invalid=96777 0278: dt=36.288000, rms=0.566 (0.308%), neg=0, invalid=96777 0279: dt=31.104000, rms=0.565 (0.046%), neg=0, invalid=96777 0280: dt=31.104000, rms=0.565 (0.120%), neg=0, invalid=96777 0281: dt=31.104000, rms=0.564 (0.147%), neg=0, invalid=96777 0282: dt=31.104000, rms=0.563 (0.170%), neg=0, invalid=96777 0283: dt=31.104000, rms=0.562 (0.202%), neg=0, invalid=96777 0284: dt=31.104000, rms=0.560 (0.255%), neg=0, invalid=96777 0285: dt=31.104000, rms=0.559 (0.283%), neg=0, invalid=96777 0286: dt=31.104000, rms=0.557 (0.254%), neg=0, invalid=96777 0287: dt=31.104000, rms=0.556 (0.238%), neg=0, invalid=96777 0288: dt=31.104000, rms=0.555 (0.222%), neg=0, invalid=96777 0289: dt=31.104000, rms=0.554 (0.237%), neg=0, invalid=96777 0290: dt=31.104000, rms=0.552 (0.244%), neg=0, invalid=96777 0291: dt=31.104000, rms=0.551 (0.226%), neg=0, invalid=96777 0292: dt=31.104000, rms=0.550 (0.220%), neg=0, invalid=96777 0293: dt=31.104000, rms=0.548 (0.222%), neg=0, invalid=96777 0294: dt=31.104000, rms=0.547 (0.222%), neg=0, invalid=96777 0295: dt=31.104000, rms=0.546 (0.227%), neg=0, invalid=96777 0296: dt=31.104000, rms=0.545 (0.212%), neg=0, invalid=96777 0297: dt=31.104000, rms=0.544 (0.192%), neg=0, invalid=96777 0298: dt=31.104000, rms=0.543 (0.182%), neg=0, invalid=96777 0299: dt=31.104000, rms=0.542 (0.169%), neg=0, invalid=96777 0300: dt=31.104000, rms=0.541 (0.157%), neg=0, invalid=96777 0301: dt=31.104000, rms=0.540 (0.155%), neg=0, invalid=96777 0302: dt=31.104000, rms=0.539 (0.138%), neg=0, invalid=96777 0303: dt=31.104000, rms=0.539 (0.135%), neg=0, invalid=96777 0304: dt=31.104000, rms=0.538 (0.132%), neg=0, invalid=96777 0305: dt=31.104000, rms=0.537 (0.122%), neg=0, invalid=96777 0306: dt=31.104000, rms=0.537 (0.114%), neg=0, invalid=96777 0307: dt=31.104000, rms=0.536 (0.112%), neg=0, invalid=96777 0308: dt=31.104000, rms=0.536 (0.109%), neg=0, invalid=96777 0309: dt=31.104000, rms=0.535 (0.094%), neg=0, invalid=96777 0310: dt=31.104000, rms=0.535 (0.100%), neg=0, invalid=96777 0311: dt=31.104000, rms=0.534 (0.092%), neg=0, invalid=96777 0312: dt=31.104000, rms=0.534 (0.086%), neg=0, invalid=96777 0313: dt=31.104000, rms=0.533 (0.081%), neg=0, invalid=96777 0314: dt=31.104000, rms=0.533 (0.074%), neg=0, invalid=96777 0315: dt=31.104000, rms=0.532 (0.074%), neg=0, invalid=96777 0316: dt=31.104000, rms=0.532 (0.069%), neg=0, invalid=96777 0317: dt=31.104000, rms=0.532 (0.071%), neg=0, invalid=96777 0318: dt=31.104000, rms=0.531 (0.069%), neg=0, invalid=96777 0319: dt=31.104000, rms=0.531 (0.073%), neg=0, invalid=96777 0320: dt=31.104000, rms=0.531 (0.070%), neg=0, invalid=96777 0321: dt=31.104000, rms=0.530 (0.066%), neg=0, invalid=96777 0322: dt=31.104000, rms=0.530 (0.063%), neg=0, invalid=96777 0323: dt=31.104000, rms=0.529 (0.065%), neg=0, invalid=96777 0324: dt=31.104000, rms=0.529 (0.064%), neg=0, invalid=96777 0325: dt=31.104000, rms=0.529 (0.058%), neg=0, invalid=96777 0326: dt=31.104000, rms=0.529 (0.055%), neg=0, invalid=96777 0327: dt=31.104000, rms=0.528 (0.050%), neg=0, invalid=96777 0328: dt=31.104000, rms=0.528 (0.057%), neg=0, invalid=96777 0329: dt=31.104000, rms=0.528 (0.054%), neg=0, invalid=96777 0330: dt=31.104000, rms=0.527 (0.054%), neg=0, invalid=96777 0331: dt=31.104000, rms=0.527 (0.046%), neg=0, invalid=96777 0332: dt=31.104000, rms=0.527 (0.051%), neg=0, invalid=96777 0333: dt=31.104000, rms=0.527 (0.053%), neg=0, invalid=96777 0334: dt=31.104000, rms=0.526 (0.051%), neg=0, invalid=96777 0335: dt=31.104000, rms=0.526 (0.047%), neg=0, invalid=96777 0336: dt=31.104000, rms=0.526 (0.045%), neg=0, invalid=96777 0337: dt=31.104000, rms=0.526 (0.044%), neg=0, invalid=96777 0338: dt=31.104000, rms=0.525 (0.039%), neg=0, invalid=96777 0339: dt=31.104000, rms=0.525 (0.040%), neg=0, invalid=96777 0340: dt=31.104000, rms=0.525 (0.035%), neg=0, invalid=96777 0341: dt=31.104000, rms=0.525 (0.040%), neg=0, invalid=96777 0342: dt=31.104000, rms=0.525 (0.039%), neg=0, invalid=96777 0343: dt=31.104000, rms=0.524 (0.040%), neg=0, invalid=96777 0344: dt=31.104000, rms=0.524 (0.036%), neg=0, invalid=96777 0345: dt=31.104000, rms=0.524 (0.036%), neg=0, invalid=96777 0346: dt=31.104000, rms=0.524 (0.035%), neg=0, invalid=96777 0347: dt=31.104000, rms=0.524 (0.036%), neg=0, invalid=96777 0348: dt=31.104000, rms=0.524 (0.032%), neg=0, invalid=96777 0349: dt=31.104000, rms=0.523 (0.030%), neg=0, invalid=96777 0350: dt=31.104000, rms=0.523 (0.032%), neg=0, invalid=96777 0351: dt=31.104000, rms=0.523 (0.033%), neg=0, invalid=96777 0352: dt=31.104000, rms=0.523 (0.031%), neg=0, invalid=96777 0353: dt=31.104000, rms=0.523 (0.029%), neg=0, invalid=96777 0354: dt=31.104000, rms=0.523 (0.029%), neg=0, invalid=96777 0355: dt=31.104000, rms=0.522 (0.032%), neg=0, invalid=96777 0356: dt=31.104000, rms=0.522 (0.033%), neg=0, invalid=96777 0357: dt=31.104000, rms=0.522 (0.031%), neg=0, invalid=96777 0358: dt=31.104000, rms=0.522 (0.033%), neg=0, invalid=96777 0359: dt=31.104000, rms=0.522 (0.030%), neg=0, invalid=96777 0360: dt=31.104000, rms=0.522 (0.028%), neg=0, invalid=96777 0361: dt=31.104000, rms=0.521 (0.028%), neg=0, invalid=96777 0362: dt=31.104000, rms=0.521 (0.028%), neg=0, invalid=96777 0363: dt=31.104000, rms=0.521 (0.027%), neg=0, invalid=96777 0364: dt=31.104000, rms=0.521 (0.026%), neg=0, invalid=96777 0365: dt=31.104000, rms=0.521 (0.029%), neg=0, invalid=96777 0366: dt=31.104000, rms=0.521 (0.026%), neg=0, invalid=96777 0367: dt=31.104000, rms=0.521 (0.029%), neg=0, invalid=96777 0368: dt=31.104000, rms=0.520 (0.029%), neg=0, invalid=96777 0369: dt=31.104000, rms=0.520 (0.027%), neg=0, invalid=96777 0370: dt=31.104000, rms=0.520 (0.024%), neg=0, invalid=96777 0371: dt=31.104000, rms=0.520 (0.023%), neg=0, invalid=96777 0372: dt=331.776000, rms=0.520 (0.016%), neg=0, invalid=96777 0373: dt=331.776000, rms=0.520 (-1.241%), neg=0, invalid=96777 setting smoothness coefficient to 0.118 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.530, neg=0, invalid=96777 0374: dt=25.600000, rms=0.529 (0.300%), neg=0, invalid=96777 0375: dt=11.200000, rms=0.528 (0.186%), neg=0, invalid=96777 0376: dt=11.200000, rms=0.527 (0.165%), neg=0, invalid=96777 0377: dt=44.800000, rms=0.524 (0.447%), neg=0, invalid=96777 0378: dt=2.800000, rms=0.524 (0.072%), neg=0, invalid=96777 0379: dt=11.200000, rms=0.523 (0.183%), neg=0, invalid=96777 0380: dt=44.800000, rms=0.522 (0.247%), neg=0, invalid=96777 0381: dt=2.800000, rms=0.521 (0.136%), neg=0, invalid=96777 0382: dt=7.642857, rms=0.520 (0.192%), neg=0, invalid=96777 0383: dt=19.200000, rms=0.519 (0.211%), neg=0, invalid=96777 0384: dt=4.222222, rms=0.519 (0.061%), neg=0, invalid=96777 0385: dt=11.200000, rms=0.518 (0.132%), neg=0, invalid=96777 0386: dt=44.800000, rms=0.516 (0.325%), neg=0, invalid=96777 0387: dt=6.333333, rms=0.516 (0.093%), neg=0, invalid=96777 0388: dt=44.800000, rms=0.514 (0.288%), neg=0, invalid=96777 0389: dt=5.120000, rms=0.514 (0.101%), neg=0, invalid=96777 0390: dt=11.200000, rms=0.513 (0.102%), neg=0, invalid=96777 0391: dt=44.800000, rms=0.512 (0.275%), neg=0, invalid=96777 0392: dt=32.000000, rms=0.511 (0.157%), neg=0, invalid=96777 0393: dt=2.800000, rms=0.511 (0.046%), neg=0, invalid=96777 0394: dt=2.800000, rms=0.511 (0.034%), neg=0, invalid=96777 0395: dt=2.800000, rms=0.510 (0.039%), neg=0, invalid=96777 0396: dt=2.800000, rms=0.510 (0.036%), neg=0, invalid=96777 0397: dt=2.800000, rms=0.510 (0.049%), neg=0, invalid=96777 0398: dt=2.800000, rms=0.510 (0.064%), neg=0, invalid=96777 0399: dt=2.800000, rms=0.509 (0.079%), neg=0, invalid=96777 0400: dt=2.800000, rms=0.509 (0.083%), neg=0, invalid=96777 0401: dt=2.800000, rms=0.508 (0.078%), neg=0, invalid=96777 0402: dt=2.800000, rms=0.508 (0.080%), neg=0, invalid=96777 0403: dt=2.800000, rms=0.508 (0.089%), neg=0, invalid=96777 0404: dt=2.800000, rms=0.507 (0.094%), neg=0, invalid=96777 0405: dt=2.800000, rms=0.507 (0.096%), neg=0, invalid=96777 0406: dt=2.800000, rms=0.506 (0.093%), neg=0, invalid=96777 0407: dt=2.800000, rms=0.506 (0.098%), neg=0, invalid=96777 0408: dt=2.800000, rms=0.505 (0.098%), neg=0, invalid=96777 0409: dt=2.800000, rms=0.505 (0.091%), neg=0, invalid=96777 0410: dt=2.800000, rms=0.504 (0.090%), neg=0, invalid=96777 0411: dt=2.800000, rms=0.504 (0.093%), neg=0, invalid=96777 0412: dt=2.800000, rms=0.503 (0.086%), neg=0, invalid=96777 0413: dt=2.800000, rms=0.503 (0.086%), neg=0, invalid=96777 0414: dt=2.800000, rms=0.502 (0.088%), neg=0, invalid=96777 0415: dt=2.800000, rms=0.502 (0.089%), neg=0, invalid=96777 0416: dt=2.800000, rms=0.502 (0.084%), neg=0, invalid=96777 0417: dt=2.800000, rms=0.501 (0.079%), neg=0, invalid=96777 0418: dt=2.800000, rms=0.501 (0.078%), neg=0, invalid=96777 0419: dt=2.800000, rms=0.500 (0.076%), neg=0, invalid=96777 0420: dt=2.800000, rms=0.500 (0.071%), neg=0, invalid=96777 0421: dt=2.800000, rms=0.500 (0.071%), neg=0, invalid=96777 0422: dt=2.800000, rms=0.499 (0.070%), neg=0, invalid=96777 0423: dt=2.800000, rms=0.499 (0.060%), neg=0, invalid=96777 0424: dt=2.800000, rms=0.499 (0.072%), neg=0, invalid=96777 0425: dt=2.800000, rms=0.498 (0.062%), neg=0, invalid=96777 0426: dt=2.800000, rms=0.498 (0.063%), neg=0, invalid=96777 0427: dt=2.800000, rms=0.498 (0.058%), neg=0, invalid=96777 0428: dt=2.800000, rms=0.497 (0.055%), neg=0, invalid=96777 0429: dt=2.800000, rms=0.497 (0.052%), neg=0, invalid=96777 0430: dt=2.800000, rms=0.497 (0.050%), neg=0, invalid=96777 0431: dt=2.800000, rms=0.497 (0.051%), neg=0, invalid=96777 0432: dt=2.800000, rms=0.496 (0.051%), neg=0, invalid=96777 0433: dt=2.800000, rms=0.496 (0.045%), neg=0, invalid=96777 0434: dt=2.800000, rms=0.496 (0.049%), neg=0, invalid=96777 0435: dt=2.800000, rms=0.496 (0.048%), neg=0, invalid=96777 0436: dt=2.800000, rms=0.496 (0.047%), neg=0, invalid=96777 0437: dt=2.800000, rms=0.495 (0.044%), neg=0, invalid=96777 0438: dt=2.800000, rms=0.495 (0.036%), neg=0, invalid=96777 0439: dt=2.800000, rms=0.495 (0.046%), neg=0, invalid=96777 0440: dt=2.800000, rms=0.495 (0.040%), neg=0, invalid=96777 0441: dt=2.800000, rms=0.495 (0.034%), neg=0, invalid=96777 0442: dt=2.800000, rms=0.494 (0.035%), neg=0, invalid=96777 0443: dt=2.800000, rms=0.494 (0.033%), neg=0, invalid=96777 0444: dt=2.800000, rms=0.494 (0.034%), neg=0, invalid=96777 0445: dt=2.800000, rms=0.494 (0.034%), neg=0, invalid=96777 0446: dt=2.800000, rms=0.494 (0.029%), neg=0, invalid=96777 0447: dt=2.800000, rms=0.494 (0.030%), neg=0, invalid=96777 0448: dt=2.800000, rms=0.493 (0.029%), neg=0, invalid=96777 0449: dt=2.800000, rms=0.493 (0.030%), neg=0, invalid=96777 0450: dt=2.800000, rms=0.493 (0.030%), neg=0, invalid=96777 0451: dt=2.800000, rms=0.493 (0.031%), neg=0, invalid=96777 0452: dt=2.800000, rms=0.493 (0.029%), neg=0, invalid=96777 0453: dt=2.800000, rms=0.493 (0.031%), neg=0, invalid=96777 0454: dt=2.800000, rms=0.493 (0.025%), neg=0, invalid=96777 0455: dt=2.800000, rms=0.492 (0.025%), neg=0, invalid=96777 0456: dt=2.800000, rms=0.492 (0.026%), neg=0, invalid=96777 0457: dt=2.800000, rms=0.492 (0.023%), neg=0, invalid=96777 0458: dt=2.800000, rms=0.492 (0.025%), neg=0, invalid=96777 0459: dt=2.800000, rms=0.492 (0.021%), neg=0, invalid=96777 0460: dt=44.800000, rms=0.492 (0.033%), neg=0, invalid=96777 0461: dt=11.200000, rms=0.492 (0.009%), neg=0, invalid=96777 0462: dt=11.200000, rms=0.492 (0.007%), neg=0, invalid=96777 0463: dt=11.200000, rms=0.492 (0.013%), neg=0, invalid=96777 0464: dt=11.200000, rms=0.492 (0.023%), neg=0, invalid=96777 0465: dt=11.200000, rms=0.491 (0.028%), neg=0, invalid=96777 0466: dt=11.200000, rms=0.491 (0.029%), neg=0, invalid=96777 0467: dt=11.200000, rms=0.491 (0.040%), neg=0, invalid=96777 0468: dt=11.200000, rms=0.491 (0.040%), neg=0, invalid=96777 0469: dt=11.200000, rms=0.491 (0.046%), neg=0, invalid=96777 0470: dt=11.200000, rms=0.490 (0.044%), neg=0, invalid=96777 0471: dt=11.200000, rms=0.490 (0.050%), neg=0, invalid=96777 0472: dt=11.200000, rms=0.490 (0.052%), neg=0, invalid=96777 0473: dt=11.200000, rms=0.490 (0.050%), neg=0, invalid=96777 0474: dt=11.200000, rms=0.490 (0.033%), neg=0, invalid=96777 0475: dt=11.200000, rms=0.489 (0.070%), neg=0, invalid=96777 0476: dt=11.200000, rms=0.489 (0.048%), neg=0, invalid=96777 0477: dt=11.200000, rms=0.489 (0.012%), neg=0, invalid=96777 0478: dt=11.200000, rms=0.489 (0.050%), neg=0, invalid=96777 0479: dt=11.200000, rms=0.488 (0.072%), neg=0, invalid=96777 0480: dt=11.200000, rms=0.488 (0.056%), neg=0, invalid=96777 0481: dt=11.200000, rms=0.488 (-0.031%), neg=0, invalid=96777 0482: dt=2.800000, rms=0.488 (0.005%), neg=0, invalid=96777 0483: dt=8.000000, rms=0.488 (0.012%), neg=0, invalid=96777 0484: dt=102.400000, rms=0.488 (0.041%), neg=0, invalid=96777 0485: dt=4.800000, rms=0.488 (0.002%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.488, neg=0, invalid=96777 0486: dt=38.400000, rms=0.486 (0.392%), neg=0, invalid=96777 0487: dt=4.000000, rms=0.486 (0.036%), neg=0, invalid=96777 0488: dt=4.000000, rms=0.485 (0.062%), neg=0, invalid=96777 0489: dt=4.000000, rms=0.485 (0.043%), neg=0, invalid=96777 0490: dt=4.000000, rms=0.485 (0.038%), neg=0, invalid=96777 0491: dt=4.000000, rms=0.485 (0.035%), neg=0, invalid=96777 0492: dt=4.000000, rms=0.485 (0.031%), neg=0, invalid=96777 0493: dt=4.000000, rms=0.485 (0.033%), neg=0, invalid=96777 0494: dt=4.000000, rms=0.484 (0.037%), neg=0, invalid=96777 0495: dt=4.000000, rms=0.484 (0.032%), neg=0, invalid=96777 0496: dt=4.000000, rms=0.484 (0.024%), neg=0, invalid=96777 0497: dt=4.000000, rms=0.484 (0.014%), neg=0, invalid=96777 0498: dt=25.600000, rms=0.484 (0.011%), neg=0, invalid=96777 0499: dt=25.600000, rms=0.484 (0.036%), neg=0, invalid=96777 0500: dt=25.600000, rms=0.484 (-0.046%), neg=0, invalid=96777 0501: dt=2.800000, rms=0.484 (0.007%), neg=0, invalid=96777 0502: dt=2.800000, rms=0.484 (0.005%), neg=0, invalid=96777 setting smoothness coefficient to 0.400 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.512, neg=0, invalid=96777 0503: dt=0.000000, rms=0.512 (0.000%), neg=0, invalid=96777 0504: dt=0.000000, rms=0.512 (0.000%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.512, neg=0, invalid=96777 0505: dt=0.000000, rms=0.512 (0.000%), neg=0, invalid=96777 setting smoothness coefficient to 1.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.566, neg=0, invalid=96777 0506: dt=1.560811, rms=0.561 (0.987%), neg=0, invalid=96777 0507: dt=0.448000, rms=0.560 (0.047%), neg=0, invalid=96777 0508: dt=0.448000, rms=0.560 (-0.006%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.560, neg=0, invalid=96777 0509: dt=1.029126, rms=0.560 (0.150%), neg=0, invalid=96777 0510: dt=0.384000, rms=0.559 (0.011%), neg=0, invalid=96777 0511: dt=0.384000, rms=0.559 (-0.003%), neg=0, invalid=96777 resetting metric properties... setting smoothness coefficient to 2.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.502, neg=0, invalid=96777 0512: dt=0.112000, rms=0.498 (0.832%), neg=0, invalid=96777 0513: dt=0.096000, rms=0.495 (0.567%), neg=0, invalid=96777 0514: dt=0.028000, rms=0.494 (0.136%), neg=0, invalid=96777 0515: dt=0.131579, rms=0.491 (0.619%), neg=0, invalid=96777 0516: dt=0.120556, rms=0.489 (0.443%), neg=0, invalid=96777 0517: dt=0.112668, rms=0.488 (0.337%), neg=0, invalid=96777 0518: dt=0.028000, rms=0.487 (0.071%), neg=0, invalid=96777 0519: dt=0.028000, rms=0.487 (0.067%), neg=0, invalid=96777 0520: dt=0.096000, rms=0.486 (0.222%), neg=0, invalid=96777 0521: dt=0.028000, rms=0.486 (0.055%), neg=0, invalid=96777 0522: dt=0.112000, rms=0.485 (0.217%), neg=0, invalid=96777 0523: dt=0.112000, rms=0.484 (0.187%), neg=0, invalid=96777 0524: dt=0.112000, rms=0.483 (0.161%), neg=0, invalid=96777 0525: dt=0.112000, rms=0.482 (0.142%), neg=0, invalid=96777 0526: dt=0.028000, rms=0.482 (0.032%), neg=0, invalid=96777 0527: dt=0.028000, rms=0.482 (0.030%), neg=0, invalid=96777 0528: dt=0.028000, rms=0.482 (0.056%), neg=0, invalid=96777 0529: dt=0.028000, rms=0.481 (0.080%), neg=0, invalid=96777 0530: dt=0.028000, rms=0.481 (0.095%), neg=0, invalid=96777 0531: dt=0.028000, rms=0.480 (0.109%), neg=0, invalid=96777 0532: dt=0.028000, rms=0.480 (0.022%), neg=0, invalid=96777 0533: dt=0.028000, rms=0.480 (0.040%), neg=0, invalid=96777 0534: dt=0.028000, rms=0.480 (0.054%), neg=0, invalid=96777 0535: dt=0.028000, rms=0.479 (0.065%), neg=0, invalid=96777 0536: dt=0.028000, rms=0.479 (0.018%), neg=0, invalid=96777 0537: dt=0.028000, rms=0.479 (0.032%), neg=0, invalid=96777 0538: dt=0.028000, rms=0.479 (0.042%), neg=0, invalid=96777 0539: dt=0.028000, rms=0.479 (0.016%), neg=0, invalid=96777 0540: dt=0.028000, rms=0.479 (0.028%), neg=0, invalid=96777 0541: dt=0.028000, rms=0.479 (0.038%), neg=0, invalid=96777 0542: dt=0.014000, rms=0.478 (0.007%), neg=0, invalid=96777 0543: dt=0.014000, rms=0.478 (0.008%), neg=0, invalid=96777 0544: dt=0.014000, rms=0.478 (0.013%), neg=0, invalid=96777 0545: dt=0.014000, rms=0.478 (0.018%), neg=0, invalid=96777 0546: dt=0.014000, rms=0.478 (0.021%), neg=0, invalid=96777 0547: dt=0.014000, rms=0.478 (0.006%), neg=0, invalid=96777 0548: dt=0.096000, rms=0.478 (0.043%), neg=0, invalid=96777 0549: dt=0.024000, rms=0.478 (0.008%), neg=0, invalid=96777 0550: dt=0.024000, rms=0.478 (0.011%), neg=0, invalid=96777 0551: dt=0.024000, rms=0.478 (0.020%), neg=0, invalid=96777 0552: dt=0.024000, rms=0.478 (0.025%), neg=0, invalid=96777 0553: dt=0.024000, rms=0.478 (0.034%), neg=0, invalid=96777 0554: dt=0.024000, rms=0.477 (0.008%), neg=0, invalid=96777 0555: dt=0.024000, rms=0.477 (0.018%), neg=0, invalid=96777 0556: dt=0.024000, rms=0.477 (0.022%), neg=0, invalid=96777 0557: dt=0.024000, rms=0.477 (0.029%), neg=0, invalid=96777 0558: dt=0.024000, rms=0.477 (0.034%), neg=0, invalid=96777 0559: dt=0.024000, rms=0.477 (0.038%), neg=0, invalid=96777 0560: dt=0.024000, rms=0.477 (0.039%), neg=0, invalid=96777 0561: dt=0.024000, rms=0.476 (0.042%), neg=0, invalid=96777 0562: dt=0.024000, rms=0.476 (0.044%), neg=0, invalid=96777 0563: dt=0.024000, rms=0.476 (0.046%), neg=0, invalid=96777 0564: dt=0.024000, rms=0.476 (0.045%), neg=0, invalid=96777 0565: dt=0.024000, rms=0.476 (0.004%), neg=0, invalid=96777 0566: dt=0.024000, rms=0.476 (0.009%), neg=0, invalid=96777 0567: dt=0.024000, rms=0.476 (0.012%), neg=0, invalid=96777 0568: dt=0.024000, rms=0.476 (0.015%), neg=0, invalid=96777 0569: dt=0.024000, rms=0.476 (0.005%), neg=0, invalid=96777 0570: dt=0.112000, rms=0.475 (0.018%), neg=0, invalid=96777 0571: dt=0.028000, rms=0.475 (0.006%), neg=0, invalid=96777 0572: dt=0.028000, rms=0.475 (0.005%), neg=0, invalid=96777 0573: dt=0.028000, rms=0.475 (0.009%), neg=0, invalid=96777 0574: dt=0.028000, rms=0.475 (0.012%), neg=0, invalid=96777 0575: dt=0.028000, rms=0.475 (0.016%), neg=0, invalid=96777 0576: dt=0.028000, rms=0.475 (0.018%), neg=0, invalid=96777 0577: dt=0.028000, rms=0.475 (0.004%), neg=0, invalid=96777 0578: dt=0.028000, rms=0.475 (0.008%), neg=0, invalid=96777 0579: dt=0.028000, rms=0.475 (0.012%), neg=0, invalid=96777 0580: dt=0.028000, rms=0.475 (0.014%), neg=0, invalid=96777 0581: dt=0.028000, rms=0.475 (0.015%), neg=0, invalid=96777 0582: dt=0.028000, rms=0.475 (0.017%), neg=0, invalid=96777 0583: dt=0.028000, rms=0.475 (0.022%), neg=0, invalid=96777 0584: dt=0.028000, rms=0.475 (0.019%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.475, neg=0, invalid=96777 0585: dt=0.028000, rms=0.474 (0.057%), neg=0, invalid=96777 0586: dt=0.448000, rms=0.470 (0.815%), neg=0, invalid=96777 0587: dt=0.112000, rms=0.470 (0.013%), neg=0, invalid=96777 0588: dt=0.056000, rms=0.470 (0.005%), neg=0, invalid=96777 0589: dt=0.056000, rms=0.470 (0.011%), neg=0, invalid=96777 0590: dt=0.014000, rms=0.470 (0.001%), neg=0, invalid=96777 0591: dt=0.014000, rms=0.470 (0.002%), neg=0, invalid=96777 0592: dt=0.014000, rms=0.470 (0.002%), neg=0, invalid=96777 0593: dt=0.112000, rms=0.470 (0.009%), neg=0, invalid=96777 0594: dt=0.028000, rms=0.470 (0.004%), neg=0, invalid=96777 label assignment complete, 0 changed (0.00%) ********************************************************************************************* ********************************************************************************************* ********************************************************************************************* ********************* ALLOWING NEGATIVE NODES IN DEFORMATION ******************************** ********************************************************************************************* ********************************************************************************************* ********************************************************************************************* **************** pass 1 of 1 ************************ setting smoothness coefficient to 0.008 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.468, neg=0, invalid=96777 0595: dt=0.000000, rms=0.468 (-0.001%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.468, neg=0, invalid=96777 0596: dt=221.952000, rms=0.467 (0.192%), neg=0, invalid=96777 0597: dt=32.368000, rms=0.467 (0.008%), neg=0, invalid=96777 0598: dt=32.368000, rms=0.467 (0.009%), neg=0, invalid=96777 0599: dt=32.368000, rms=0.467 (0.003%), neg=0, invalid=96777 0600: dt=32.368000, rms=0.467 (0.003%), neg=0, invalid=96777 0601: dt=32.368000, rms=0.467 (0.009%), neg=0, invalid=96777 0602: dt=32.368000, rms=0.467 (0.022%), neg=0, invalid=96777 0603: dt=32.368000, rms=0.467 (0.035%), neg=0, invalid=96777 0604: dt=32.368000, rms=0.467 (0.034%), neg=0, invalid=96777 setting smoothness coefficient to 0.031 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.467, neg=0, invalid=96777 0605: dt=20.736000, rms=0.466 (0.044%), neg=0, invalid=96777 0606: dt=20.736000, rms=0.466 (0.020%), neg=0, invalid=96777 0607: dt=20.736000, rms=0.466 (0.012%), neg=0, invalid=96777 iter 0, gcam->neg = 4 after 7 iterations, nbhd size=1, neg = 0 0608: dt=20.736000, rms=0.466 (-0.012%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.466, neg=0, invalid=96777 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 0609: dt=145.152000, rms=0.463 (0.756%), neg=0, invalid=96777 0610: dt=31.104000, rms=0.462 (0.232%), neg=0, invalid=96777 0611: dt=31.104000, rms=0.461 (0.057%), neg=0, invalid=96777 0612: dt=31.104000, rms=0.461 (0.067%), neg=0, invalid=96777 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 0613: dt=31.104000, rms=0.461 (0.128%), neg=0, invalid=96777 0614: dt=31.104000, rms=0.460 (0.148%), neg=0, invalid=96777 0615: dt=31.104000, rms=0.459 (0.229%), neg=0, invalid=96777 0616: dt=31.104000, rms=0.458 (0.182%), neg=0, invalid=96777 iter 0, gcam->neg = 3 after 6 iterations, nbhd size=1, neg = 0 0617: dt=31.104000, rms=0.457 (0.207%), neg=0, invalid=96777 0618: dt=31.104000, rms=0.456 (0.132%), neg=0, invalid=96777 iter 0, gcam->neg = 1 after 1 iterations, nbhd size=0, neg = 0 0619: dt=31.104000, rms=0.456 (0.136%), neg=0, invalid=96777 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 0620: dt=31.104000, rms=0.455 (0.080%), neg=0, invalid=96777 0621: dt=31.104000, rms=0.455 (0.104%), neg=0, invalid=96777 0622: dt=31.104000, rms=0.455 (0.071%), neg=0, invalid=96777 0623: dt=36.288000, rms=0.455 (0.033%), neg=0, invalid=96777 0624: dt=36.288000, rms=0.454 (0.029%), neg=0, invalid=96777 0625: dt=36.288000, rms=0.454 (0.037%), neg=0, invalid=96777 0626: dt=36.288000, rms=0.454 (0.035%), neg=0, invalid=96777 0627: dt=36.288000, rms=0.454 (0.041%), neg=0, invalid=96777 0628: dt=36.288000, rms=0.454 (0.036%), neg=0, invalid=96777 setting smoothness coefficient to 0.118 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.454, neg=0, invalid=96777 iter 0, gcam->neg = 51 after 50 iterations, nbhd size=3, neg = 0 0629: dt=25.600000, rms=0.453 (0.376%), neg=0, invalid=96777 iter 0, gcam->neg = 83 after 41 iterations, nbhd size=3, neg = 0 0630: dt=11.200000, rms=0.452 (0.184%), neg=0, invalid=96777 iter 0, gcam->neg = 154 after 95 iterations, nbhd size=4, neg = 0 0631: dt=11.200000, rms=0.452 (0.074%), neg=0, invalid=96777 iter 0, gcam->neg = 257 after 200 iterations, nbhd size=1, neg = 1 starting rms=0.005, neg=1, removing folds in lattice.... iter 1, dt=0.000875: new neg 0, old_neg 1, delta 1, rms=0.004 (18.510%) 0632: dt=11.200000, rms=0.451 (0.126%), neg=0, invalid=96777 iter 0, gcam->neg = 11 after 1 iterations, nbhd size=0, neg = 0 0633: dt=11.200000, rms=0.450 (0.193%), neg=0, invalid=96777 iter 0, gcam->neg = 59 after 13 iterations, nbhd size=1, neg = 0 0634: dt=11.200000, rms=0.449 (0.274%), neg=0, invalid=96777 iter 0, gcam->neg = 227 after 57 iterations, nbhd size=3, neg = 0 0635: dt=11.200000, rms=0.448 (0.266%), neg=0, invalid=96777 iter 0, gcam->neg = 271 after 62 iterations, nbhd size=4, neg = 0 0636: dt=11.200000, rms=0.447 (0.193%), neg=0, invalid=96777 iter 0, gcam->neg = 279 after 200 iterations, nbhd size=1, neg = 1 starting rms=0.006, neg=1, removing folds in lattice.... iter 1, dt=0.000750: new neg 1, old_neg 1, delta 0, rms=0.005 (11.104%) iter 2, dt=0.001311: new neg 1, old_neg 1, delta 0, rms=0.005 (8.992%) iter 3, dt=0.000573: new neg 0, old_neg 1, delta 1, rms=0.005 (3.429%) 0637: dt=11.200000, rms=0.446 (0.117%), neg=0, invalid=96777 iter 0, gcam->neg = 45 after 200 iterations, nbhd size=1, neg = 5 starting rms=0.005, neg=5, removing folds in lattice.... iter 1, dt=0.000750: new neg 3, old_neg 5, delta 2, rms=0.004 (19.114%) iter 2, dt=0.000573: new neg 1, old_neg 3, delta 2, rms=0.004 (8.744%) iter 3, dt=0.001311: new neg 1, old_neg 1, delta 0, rms=0.003 (5.139%) iter 4, dt=0.000573: new neg 0, old_neg 1, delta 1, rms=0.003 (4.369%) 0638: dt=11.200000, rms=0.446 (0.088%), neg=0, invalid=96777 0639: dt=11.200000, rms=0.445 (0.140%), neg=0, invalid=96777 0640: dt=2.800000, rms=0.445 (0.010%), neg=0, invalid=96777 0641: dt=2.800000, rms=0.445 (0.041%), neg=0, invalid=96777 0642: dt=2.800000, rms=0.445 (0.044%), neg=0, invalid=96777 0643: dt=2.800000, rms=0.445 (0.058%), neg=0, invalid=96777 0644: dt=2.800000, rms=0.444 (0.059%), neg=0, invalid=96777 0645: dt=2.800000, rms=0.444 (0.066%), neg=0, invalid=96777 0646: dt=2.800000, rms=0.444 (0.063%), neg=0, invalid=96777 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 0647: dt=2.800000, rms=0.444 (0.061%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.444, neg=0, invalid=96777 iter 0, gcam->neg = 47 after 200 iterations, nbhd size=1, neg = 10 starting rms=0.005, neg=10, removing folds in lattice.... iter 1, dt=0.000375: new neg 9, old_neg 10, delta 1, rms=0.004 (25.202%) iter 2, dt=0.000246: new neg 5, old_neg 9, delta 4, rms=0.003 (9.932%) iter 3, dt=0.000328: new neg 5, old_neg 5, delta 0, rms=0.003 (6.549%) iter 4, dt=0.000410: new neg 2, old_neg 5, delta 3, rms=0.003 (9.203%) iter 5, dt=0.000573: new neg 0, old_neg 2, delta 2, rms=0.003 (6.998%) 0648: dt=44.800000, rms=0.440 (0.796%), neg=0, invalid=96777 0649: dt=3.666667, rms=0.440 (0.037%), neg=0, invalid=96777 0650: dt=3.666667, rms=0.439 (0.076%), neg=0, invalid=96777 0651: dt=3.666667, rms=0.439 (0.076%), neg=0, invalid=96777 0652: dt=3.666667, rms=0.439 (0.082%), neg=0, invalid=96777 0653: dt=3.666667, rms=0.438 (0.084%), neg=0, invalid=96777 0654: dt=3.666667, rms=0.438 (0.071%), neg=0, invalid=96777 iter 0, gcam->neg = 60 after 200 iterations, nbhd size=2, neg = 5 starting rms=0.004, neg=5, removing folds in lattice.... iter 1, dt=0.000219: new neg 4, old_neg 5, delta 1, rms=0.003 (23.411%) iter 2, dt=0.000573: new neg 0, old_neg 4, delta 4, rms=0.003 (11.339%) 0655: dt=44.800000, rms=0.437 (0.166%), neg=0, invalid=96777 0656: dt=11.200000, rms=0.437 (0.053%), neg=0, invalid=96777 setting smoothness coefficient to 0.400 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.442, neg=0, invalid=96777 iter 0, gcam->neg = 55 after 200 iterations, nbhd size=3, neg = 2 starting rms=0.003, neg=2, removing folds in lattice.... iter 1, dt=0.000219: new neg 0, old_neg 2, delta 2, rms=0.003 (17.796%) 0657: dt=4.864865, rms=0.441 (0.205%), neg=0, invalid=96777 iter 0, gcam->neg = 7 after 9 iterations, nbhd size=1, neg = 0 0658: dt=0.864000, rms=0.441 (0.017%), neg=0, invalid=96777 0659: dt=0.864000, rms=0.441 (0.034%), neg=0, invalid=96777 iter 0, gcam->neg = 6 after 2 iterations, nbhd size=0, neg = 0 0660: dt=0.864000, rms=0.441 (0.055%), neg=0, invalid=96777 iter 0, gcam->neg = 6 after 2 iterations, nbhd size=0, neg = 0 0661: dt=0.864000, rms=0.441 (0.066%), neg=0, invalid=96777 0662: dt=0.864000, rms=0.440 (0.065%), neg=0, invalid=96777 iter 0, gcam->neg = 4 after 7 iterations, nbhd size=1, neg = 0 0663: dt=0.864000, rms=0.440 (0.054%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.440, neg=0, invalid=96777 iter 0, gcam->neg = 6 after 8 iterations, nbhd size=1, neg = 0 0664: dt=1.008000, rms=0.440 (0.051%), neg=0, invalid=96777 iter 0, gcam->neg = 35 after 16 iterations, nbhd size=1, neg = 0 0665: dt=2.088889, rms=0.440 (0.098%), neg=0, invalid=96777 iter 0, gcam->neg = 13 after 13 iterations, nbhd size=1, neg = 0 0666: dt=0.576000, rms=0.439 (0.029%), neg=0, invalid=96777 0667: dt=0.576000, rms=0.439 (0.025%), neg=0, invalid=96777 0668: dt=0.576000, rms=0.439 (0.046%), neg=0, invalid=96777 0669: dt=0.576000, rms=0.439 (0.062%), neg=0, invalid=96777 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 0670: dt=0.576000, rms=0.439 (0.074%), neg=0, invalid=96777 0671: dt=0.576000, rms=0.438 (0.078%), neg=0, invalid=96777 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 0672: dt=0.576000, rms=0.438 (0.080%), neg=0, invalid=96777 0673: dt=0.576000, rms=0.437 (0.077%), neg=0, invalid=96777 0674: dt=0.576000, rms=0.437 (0.074%), neg=0, invalid=96777 setting smoothness coefficient to 1.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.444, neg=0, invalid=96777 0675: dt=0.000000, rms=0.444 (0.000%), neg=0, invalid=96777 0676: dt=0.000000, rms=0.444 (0.000%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.444, neg=0, invalid=96777 0677: dt=0.000000, rms=0.444 (0.000%), neg=0, invalid=96777 resetting metric properties... setting smoothness coefficient to 2.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.433, neg=0, invalid=96777 iter 0, gcam->neg = 738 after 25 iterations, nbhd size=2, neg = 0 0678: dt=1.608782, rms=0.402 (7.049%), neg=0, invalid=96777 0679: dt=0.000109, rms=0.402 (0.001%), neg=0, invalid=96777 0680: dt=0.000109, rms=0.402 (0.000%), neg=0, invalid=96777 0681: dt=0.000109, rms=0.402 (-0.000%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.402, neg=0, invalid=96777 0682: dt=0.000109, rms=0.402 (0.000%), neg=0, invalid=96777 0683: dt=0.000000, rms=0.402 (0.000%), neg=0, invalid=96777 label assignment complete, 0 changed (0.00%) label assignment complete, 0 changed (0.00%) ***************** morphing with label term set to 0 ******************************* **************** pass 1 of 1 ************************ setting smoothness coefficient to 0.008 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.392, neg=0, invalid=96777 0684: dt=0.000000, rms=0.393 (-0.188%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.393, neg=0, invalid=96777 0685: dt=32.368000, rms=0.393 (0.004%), neg=0, invalid=96777 0686: dt=23.120000, rms=0.393 (0.000%), neg=0, invalid=96777 0687: dt=23.120000, rms=0.393 (0.000%), neg=0, invalid=96777 0688: dt=23.120000, rms=0.393 (-0.001%), neg=0, invalid=96777 setting smoothness coefficient to 0.031 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.393, neg=0, invalid=96777 0689: dt=0.000000, rms=0.393 (0.000%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.393, neg=0, invalid=96777 0690: dt=36.288000, rms=0.393 (0.026%), neg=0, invalid=96777 iter 0, gcam->neg = 3 after 0 iterations, nbhd size=0, neg = 0 0691: dt=82.944000, rms=0.393 (0.027%), neg=0, invalid=96777 0692: dt=7.776000, rms=0.393 (0.001%), neg=0, invalid=96777 0693: dt=7.776000, rms=0.393 (0.004%), neg=0, invalid=96777 0694: dt=7.776000, rms=0.393 (0.007%), neg=0, invalid=96777 0695: dt=7.776000, rms=0.393 (0.009%), neg=0, invalid=96777 0696: dt=7.776000, rms=0.393 (0.009%), neg=0, invalid=96777 0697: dt=7.776000, rms=0.393 (0.009%), neg=0, invalid=96777 0698: dt=7.776000, rms=0.393 (0.009%), neg=0, invalid=96777 setting smoothness coefficient to 0.118 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.393, neg=0, invalid=96777 iter 0, gcam->neg = 19 after 200 iterations, nbhd size=4, neg = 2 starting rms=0.004, neg=2, removing folds in lattice.... iter 1, dt=0.000100: new neg 0, old_neg 2, delta 2, rms=0.003 (29.424%) 0699: dt=9.600000, rms=0.393 (0.042%), neg=0, invalid=96777 iter 0, gcam->neg = 19 after 200 iterations, nbhd size=2, neg = 5 starting rms=0.006, neg=5, removing folds in lattice.... iter 1, dt=0.000039: new neg 0, old_neg 5, delta 5, rms=0.003 (51.660%) 0700: dt=9.600000, rms=0.393 (0.048%), neg=0, invalid=96777 iter 0, gcam->neg = 2 after 200 iterations, nbhd size=1, neg = 3 starting rms=0.007, neg=3, removing folds in lattice.... iter 1, dt=0.000219: new neg 0, old_neg 3, delta 3, rms=0.003 (59.014%) 0701: dt=2.800000, rms=0.393 (0.005%), neg=0, invalid=96777 0702: dt=2.800000, rms=0.393 (0.016%), neg=0, invalid=96777 iter 0, gcam->neg = 5 after 200 iterations, nbhd size=2, neg = 5 starting rms=0.008, neg=5, removing folds in lattice.... iter 1, dt=0.000039: new neg 0, old_neg 5, delta 5, rms=0.003 (59.176%) 0703: dt=2.800000, rms=0.393 (-0.005%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.393, neg=0, invalid=96777 iter 0, gcam->neg = 102 after 200 iterations, nbhd size=1, neg = 6 starting rms=0.006, neg=6, removing folds in lattice.... iter 1, dt=0.000023: new neg 1, old_neg 6, delta 5, rms=0.003 (46.836%) iter 2, dt=0.000102: new neg 0, old_neg 1, delta 1, rms=0.003 (11.230%) 0704: dt=32.000000, rms=0.391 (0.437%), neg=0, invalid=96777 iter 0, gcam->neg = 14 after 34 iterations, nbhd size=4, neg = 0 0705: dt=8.000000, rms=0.391 (0.048%), neg=0, invalid=96777 iter 0, gcam->neg = 6 after 16 iterations, nbhd size=2, neg = 0 0706: dt=8.000000, rms=0.391 (0.068%), neg=0, invalid=96777 iter 0, gcam->neg = 51 after 200 iterations, nbhd size=1, neg = 2 starting rms=0.004, neg=2, removing folds in lattice.... iter 1, dt=0.000055: new neg 0, old_neg 2, delta 2, rms=0.003 (34.549%) 0707: dt=8.000000, rms=0.390 (0.105%), neg=0, invalid=96777 iter 0, gcam->neg = 1 after 7 iterations, nbhd size=1, neg = 0 0708: dt=8.000000, rms=0.390 (0.042%), neg=0, invalid=96777 iter 0, gcam->neg = 71 after 200 iterations, nbhd size=4, neg = 3 starting rms=0.005, neg=3, removing folds in lattice.... iter 1, dt=0.000219: new neg 0, old_neg 3, delta 3, rms=0.002 (56.034%) 0709: dt=8.000000, rms=0.390 (0.044%), neg=0, invalid=96777 iter 0, gcam->neg = 1 after 5 iterations, nbhd size=1, neg = 0 0710: dt=8.000000, rms=0.390 (0.063%), neg=0, invalid=96777 iter 0, gcam->neg = 11 after 10 iterations, nbhd size=1, neg = 0 0711: dt=8.000000, rms=0.389 (0.105%), neg=0, invalid=96777 iter 0, gcam->neg = 68 after 200 iterations, nbhd size=2, neg = 3 starting rms=0.006, neg=3, removing folds in lattice.... iter 1, dt=0.000156: new neg 0, old_neg 3, delta 3, rms=0.003 (56.297%) 0712: dt=8.000000, rms=0.389 (0.079%), neg=0, invalid=96777 iter 0, gcam->neg = 1 after 5 iterations, nbhd size=1, neg = 0 0713: dt=11.200000, rms=0.389 (0.040%), neg=0, invalid=96777 setting smoothness coefficient to 0.400 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.391, neg=0, invalid=96777 iter 0, gcam->neg = 7 after 200 iterations, nbhd size=1, neg = 3 starting rms=0.006, neg=3, removing folds in lattice.... iter 1, dt=0.000188: new neg 0, old_neg 3, delta 3, rms=0.002 (65.135%) 0714: dt=0.432000, rms=0.391 (0.017%), neg=0, invalid=96777 iter 0, gcam->neg = 56 after 200 iterations, nbhd size=2, neg = 4 starting rms=0.006, neg=4, removing folds in lattice.... iter 1, dt=0.000125: new neg 0, old_neg 4, delta 4, rms=0.002 (65.473%) 0715: dt=3.659574, rms=0.390 (0.176%), neg=0, invalid=96777 iter 0, gcam->neg = 6 after 1 iterations, nbhd size=0, neg = 0 0716: dt=1.008000, rms=0.390 (0.025%), neg=0, invalid=96777 iter 0, gcam->neg = 30 after 33 iterations, nbhd size=3, neg = 0 0717: dt=1.008000, rms=0.390 (0.030%), neg=0, invalid=96777 iter 0, gcam->neg = 45 after 200 iterations, nbhd size=4, neg = 7 starting rms=0.007, neg=7, removing folds in lattice.... iter 1, dt=0.000094: new neg 0, old_neg 7, delta 7, rms=0.002 (67.602%) 0718: dt=1.008000, rms=0.390 (0.053%), neg=0, invalid=96777 iter 0, gcam->neg = 2 after 0 iterations, nbhd size=0, neg = 0 0719: dt=1.008000, rms=0.389 (0.017%), neg=0, invalid=96777 iter 0, gcam->neg = 10 after 8 iterations, nbhd size=1, neg = 0 0720: dt=1.008000, rms=0.389 (0.041%), neg=0, invalid=96777 iter 0, gcam->neg = 51 after 21 iterations, nbhd size=2, neg = 0 0721: dt=1.008000, rms=0.389 (0.046%), neg=0, invalid=96777 iter 0, gcam->neg = 291 after 200 iterations, nbhd size=1, neg = 5 starting rms=0.008, neg=5, removing folds in lattice.... iter 1, dt=0.000188: new neg 0, old_neg 5, delta 5, rms=0.002 (71.342%) 0722: dt=1.008000, rms=0.389 (-0.009%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.389, neg=0, invalid=96777 0723: dt=0.063000, rms=0.389 (0.003%), neg=0, invalid=96777 iter 0, gcam->neg = 3 after 200 iterations, nbhd size=1, neg = 6 starting rms=0.007, neg=6, removing folds in lattice.... iter 1, dt=0.000188: new neg 0, old_neg 6, delta 6, rms=0.002 (72.786%) 0724: dt=0.576000, rms=0.389 (0.026%), neg=0, invalid=96777 iter 0, gcam->neg = 86 after 200 iterations, nbhd size=1, neg = 2 starting rms=0.004, neg=2, removing folds in lattice.... iter 1, dt=0.000039: new neg 1, old_neg 2, delta 1, rms=0.003 (24.667%) iter 2, dt=0.000143: new neg 0, old_neg 1, delta 1, rms=0.002 (17.556%) 0725: dt=4.848485, rms=0.388 (0.185%), neg=0, invalid=96777 0726: dt=0.252000, rms=0.388 (0.004%), neg=0, invalid=96777 0727: dt=0.252000, rms=0.388 (0.010%), neg=0, invalid=96777 0728: dt=0.252000, rms=0.388 (0.020%), neg=0, invalid=96777 0729: dt=0.252000, rms=0.388 (0.027%), neg=0, invalid=96777 0730: dt=0.252000, rms=0.388 (0.033%), neg=0, invalid=96777 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 0731: dt=0.252000, rms=0.388 (0.036%), neg=0, invalid=96777 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 0732: dt=0.252000, rms=0.388 (0.039%), neg=0, invalid=96777 iter 0, gcam->neg = 9 after 19 iterations, nbhd size=2, neg = 0 0733: dt=0.252000, rms=0.388 (0.036%), neg=0, invalid=96777 iter 0, gcam->neg = 9 after 200 iterations, nbhd size=1, neg = 3 starting rms=0.003, neg=3, removing folds in lattice.... iter 1, dt=0.000094: new neg 1, old_neg 3, delta 2, rms=0.002 (25.598%) iter 2, dt=0.000036: new neg 0, old_neg 1, delta 1, rms=0.002 (6.880%) 0734: dt=0.252000, rms=0.387 (0.026%), neg=0, invalid=96777 setting smoothness coefficient to 1.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.392, neg=0, invalid=96777 0735: dt=0.000000, rms=0.392 (0.000%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.392, neg=0, invalid=96777 0736: dt=0.000000, rms=0.392 (0.000%), neg=0, invalid=96777 resetting metric properties... setting smoothness coefficient to 2.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.384, neg=0, invalid=96777 iter 0, gcam->neg = 259 after 23 iterations, nbhd size=2, neg = 0 0737: dt=0.461234, rms=0.377 (1.839%), neg=0, invalid=96777 0738: dt=0.000000, rms=0.377 (0.000%), neg=0, invalid=96777 iter 0, gcam->neg = 688 after 14 iterations, nbhd size=1, neg = 0 0739: dt=0.050000, rms=0.377 (-0.086%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.377, neg=0, invalid=96777 0740: dt=0.000000, rms=0.377 (0.000%), neg=0, invalid=96777 writing output transformation to transforms/talairach.m3z... GCAMwrite registration took 4 hours, 42 minutes and 40 seconds. #-------------------------------------- #@# CA Reg Inv Fri Apr 5 19:03:42 CEST 2013 /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri mri_ca_register -invert-and-save transforms/talairach.m3z Loading, Inverting, Saving, Exiting ... Reading transforms/talairach.m3z Inverting GCAM Saving inverse #-------------------------------------- #@# Remove Neck Fri Apr 5 19:05:17 CEST 2013 mri_remove_neck -radius 25 nu.mgz transforms/talairach.m3z /usr/local/freesurfer/average/RB_all_2008-03-26.gca nu_noneck.mgz erasing everything more than 25 mm from possible brain reading atlas '/usr/local/freesurfer/average/RB_all_2008-03-26.gca'... reading input volume 'nu.mgz'... reading transform 'transforms/talairach.m3z'... removing structures at least 25 mm from brain... 11873571 nonbrain voxels erased writing output to nu_noneck.mgz... nonbrain removal took 1 minutes and 31 seconds. #-------------------------------------- #@# SkullLTA Fri Apr 5 19:06:48 CEST 2013 mri_em_register -skull -t transforms/talairach.lta nu_noneck.mgz /usr/local/freesurfer/average/RB_all_withskull_2008-03-26.gca transforms/talairach_with_skull_2.lta ======= NUMBER OF OPENMP THREADS = 1 ======= aligning to atlas containing skull, setting unknown_nbr_spacing = 5 using previously computed transform transforms/talairach.lta reading 1 input volumes... logging results to talairach_with_skull_2.log reading '/usr/local/freesurfer/average/RB_all_withskull_2008-03-26.gca'... average std = 23.1 using min determinant for regularization = 53.4 0 singular and 5702 ill-conditioned covariance matrices regularized reading 'nu_noneck.mgz'... freeing gibbs priors...done. bounding unknown intensity as < 20.2 or > 943.7 total sample mean = 92.0 (1443 zeros) ************************************************ spacing=8, using 3481 sample points, tol=1.00e-05... ************************************************ register_mri: find_optimal_transform find_optimal_transform: nsamples 3481, passno 0, spacing 8 resetting wm mean[0]: 117 --> 126 resetting gm mean[0]: 74 --> 74 input volume #1 is the most T1-like using real data threshold=6.0 skull bounding box = (49, 31, 20) --> (212, 199, 216) using (103, 87, 118) as brain centroid... mean wm in atlas = 126, using box (83,66,94) --> (123, 107,142) to find MRI wm before smoothing, mri peak at 97 after smoothing, mri peak at 97, scaling input intensities by 1.299 scaling channel 0 by 1.29897 **************************************** Nine parameter search. iteration 0 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-4.3, old_max_log_p =-4.0 (thresh=-4.0) 1.029 0.092 0.018 -20.203; -0.102 1.233 0.680 -67.091; 0.031 -0.603 0.958 61.196; 0.000 0.000 0.000 1.000; reducing scale to 0.2500 **************************************** Nine parameter search. iteration 1 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-4.2, old_max_log_p =-4.3 (thresh=-4.3) 1.066 0.074 0.087 -30.632; -0.098 1.198 0.587 -55.839; -0.041 -0.539 1.037 53.476; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 2 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-4.2, old_max_log_p =-4.2 (thresh=-4.2) 1.091 0.016 0.014 -21.561; -0.029 1.183 0.623 -65.330; -0.003 -0.575 1.020 56.077; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 3 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-4.2, old_max_log_p =-4.2 (thresh=-4.2) 1.132 0.017 0.014 -27.085; -0.029 1.161 0.611 -61.834; -0.003 -0.565 1.000 57.014; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 4 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-4.2, old_max_log_p =-4.2 (thresh=-4.2) 1.149 0.024 0.102 -39.567; -0.066 1.218 0.551 -56.284; -0.078 -0.478 1.016 56.232; 0.000 0.000 0.000 1.000; reducing scale to 0.0625 **************************************** Nine parameter search. iteration 5 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-4.2, old_max_log_p =-4.2 (thresh=-4.2) 1.141 0.088 0.119 -47.916; -0.121 1.225 0.520 -46.946; -0.070 -0.448 1.031 49.526; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 6 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-4.2, old_max_log_p =-4.2 (thresh=-4.2) 1.141 0.088 0.119 -47.916; -0.121 1.225 0.520 -46.946; -0.070 -0.448 1.031 49.526; 0.000 0.000 0.000 1.000; min search scale 0.025000 reached *********************************************** Computing MAP estimate using 3481 samples... *********************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-05 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.14078 0.08796 0.11870 -47.91591; -0.12066 1.22493 0.52018 -46.94599; -0.07021 -0.44837 1.03108 49.52556; 0.00000 0.00000 0.00000 1.00000; nsamples 3481 Quasinewton: input matrix 1.14078 0.08796 0.11870 -47.91591; -0.12066 1.22493 0.52018 -46.94599; -0.07021 -0.44837 1.03108 49.52556; 0.00000 0.00000 0.00000 1.00000; IFLAG= -1 LINE SEARCH FAILED. SEE DOCUMENTATION OF ROUTINE MCSRCH ERROR RETURN OF LINE SEARCH: INFO= 3 POSSIBLE CAUSES: FUNCTION OR GRADIENT ARE INCORRECT OR INCORRECT TOLERANCESoutof QuasiNewtonEMA: 008: -log(p) = -0.0 tol 0.000010 Resulting transform: 1.141 0.088 0.119 -47.916; -0.121 1.225 0.520 -46.946; -0.070 -0.448 1.031 49.526; 0.000 0.000 0.000 1.000; pass 1, spacing 8: log(p) = -4.2 (old=-4.0) transform before final EM align: 1.141 0.088 0.119 -47.916; -0.121 1.225 0.520 -46.946; -0.070 -0.448 1.031 49.526; 0.000 0.000 0.000 1.000; ************************************************** EM alignment process ... Computing final MAP estimate using 382743 samples. ************************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-07 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.14078 0.08796 0.11870 -47.91591; -0.12066 1.22493 0.52018 -46.94599; -0.07021 -0.44837 1.03108 49.52556; 0.00000 0.00000 0.00000 1.00000; nsamples 382743 Quasinewton: input matrix 1.14078 0.08796 0.11870 -47.91591; -0.12066 1.22493 0.52018 -46.94599; -0.07021 -0.44837 1.03108 49.52556; 0.00000 0.00000 0.00000 1.00000; IFLAG= -1 LINE SEARCH FAILED. SEE DOCUMENTATION OF ROUTINE MCSRCH ERROR RETURN OF LINE SEARCH: INFO= 6 POSSIBLE CAUSES: FUNCTION OR GRADIENT ARE INCORRECT OR INCORRECT TOLERANCESoutof QuasiNewtonEMA: 010: -log(p) = 4.6 tol 0.000000 final transform: 1.141 0.088 0.119 -47.916; -0.121 1.225 0.520 -46.946; -0.070 -0.448 1.031 49.526; 0.000 0.000 0.000 1.000; writing output transformation to transforms/talairach_with_skull_2.lta... registration took 24 minutes and 46 seconds. #-------------------------------------- #@# SubCort Seg Fri Apr 5 19:31:34 CEST 2013 mri_ca_label -align norm.mgz transforms/talairach.m3z /usr/local/freesurfer/average/RB_all_2008-03-26.gca aseg.auto_noCCseg.mgz sysname Linux hostname linux-To-be-filled-by-O-E-M machine x86_64 setenv SUBJECTS_DIR /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer cd /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri mri_ca_label -align norm.mgz transforms/talairach.m3z /usr/local/freesurfer/average/RB_all_2008-03-26.gca aseg.auto_noCCseg.mgz renormalizing sequences with structure alignment, equivalent to: -renormalize -renormalize_mean 0.500 -regularize 0.500 reading 1 input volumes... reading classifier array from /usr/local/freesurfer/average/RB_all_2008-03-26.gca... reading input volume from norm.mgz... average std[0] = 6.9 reading transform from transforms/talairach.m3z... Atlas used for the 3D morph was /usr/local/freesurfer/average/RB_all_2008-03-26.gca average std = 6.9 using min determinant for regularization = 4.7 0 singular and 0 ill-conditioned covariance matrices regularized labeling volume... renormalizing by structure alignment.... renormalizing input #0 gca peak = 0.15151 (27) mri peak = 0.13804 (20) Left_Lateral_Ventricle (4): linear fit = 0.70 x + 0.0 (3655 voxels, overlap=0.291) Left_Lateral_Ventricle (4): linear fit = 0.70 x + 0.0 (3655 voxels, peak = 19), gca=19.0 gca peak = 0.14982 (20) mri peak = 0.12764 (21) Right_Lateral_Ventricle (43): linear fit = 0.81 x + 0.0 (2676 voxels, overlap=0.601) Right_Lateral_Ventricle (43): linear fit = 0.81 x + 0.0 (2676 voxels, peak = 16), gca=16.3 gca peak = 0.28003 (97) mri peak = 0.08203 (89) Right_Pallidum (52): linear fit = 0.89 x + 0.0 (256 voxels, overlap=0.046) Right_Pallidum (52): linear fit = 0.89 x + 0.0 (256 voxels, peak = 87), gca=86.8 gca peak = 0.18160 (96) mri peak = 0.13333 (96) Left_Pallidum (13): linear fit = 0.94 x + 0.0 (263 voxels, overlap=0.395) Left_Pallidum (13): linear fit = 0.94 x + 0.0 (263 voxels, peak = 91), gca=90.7 gca peak = 0.27536 (62) mri peak = 0.13285 (70) Right_Hippocampus (53): linear fit = 1.11 x + 0.0 (687 voxels, overlap=0.399) Right_Hippocampus (53): linear fit = 1.11 x + 0.0 (687 voxels, peak = 69), gca=68.5 gca peak = 0.32745 (63) mri peak = 0.13143 (69) Left_Hippocampus (17): linear fit = 1.04 x + 0.0 (612 voxels, overlap=1.005) Left_Hippocampus (17): linear fit = 1.04 x + 0.0 (612 voxels, peak = 66), gca=65.8 gca peak = 0.08597 (105) mri peak = 0.06714 (110) Right_Cerebral_White_Matter (41): linear fit = 1.02 x + 0.0 (20059 voxels, overlap=0.855) Right_Cerebral_White_Matter (41): linear fit = 1.02 x + 0.0 (20059 voxels, peak = 108), gca=107.6 gca peak = 0.09209 (106) mri peak = 0.07460 (112) Left_Cerebral_White_Matter (2): linear fit = 1.05 x + 0.0 (21068 voxels, overlap=0.613) Left_Cerebral_White_Matter (2): linear fit = 1.05 x + 0.0 (21068 voxels, peak = 112), gca=111.8 gca peak = 0.07826 (63) mri peak = 0.04023 (72) Left_Cerebral_Cortex (3): linear fit = 1.18 x + 0.0 (15906 voxels, overlap=0.406) Left_Cerebral_Cortex (3): linear fit = 1.18 x + 0.0 (15906 voxels, peak = 75), gca=74.7 gca peak = 0.08598 (64) mri peak = 0.03892 (74) Right_Cerebral_Cortex (42): linear fit = 1.20 x + 0.0 (17819 voxels, overlap=0.219) Right_Cerebral_Cortex (42): linear fit = 1.20 x + 0.0 (17819 voxels, peak = 76), gca=76.5 gca peak = 0.24164 (71) mri peak = 0.14964 (78) Right_Caudate (50): linear fit = 1.08 x + 0.0 (662 voxels, overlap=0.838) Right_Caudate (50): linear fit = 1.08 x + 0.0 (662 voxels, peak = 76), gca=76.3 gca peak = 0.18227 (75) mri peak = 0.14060 (78) Left_Caudate (11): linear fit = 1.01 x + 0.0 (762 voxels, overlap=0.854) Left_Caudate (11): linear fit = 1.01 x + 0.0 (762 voxels, peak = 76), gca=76.1 gca peak = 0.10629 (62) mri peak = 0.06085 (65) Left_Cerebellum_Cortex (8): linear fit = 1.12 x + 0.0 (15810 voxels, overlap=0.549) Left_Cerebellum_Cortex (8): linear fit = 1.12 x + 0.0 (15810 voxels, peak = 70), gca=69.8 gca peak = 0.11668 (59) mri peak = 0.06242 (71) Right_Cerebellum_Cortex (47): linear fit = 1.15 x + 0.0 (16844 voxels, overlap=0.425) Right_Cerebellum_Cortex (47): linear fit = 1.15 x + 0.0 (16844 voxels, peak = 68), gca=68.1 gca peak = 0.17849 (88) mri peak = 0.14423 (89) Left_Cerebellum_White_Matter (7): linear fit = 1.01 x + 0.0 (4063 voxels, overlap=0.959) Left_Cerebellum_White_Matter (7): linear fit = 1.01 x + 0.0 (4063 voxels, peak = 89), gca=89.3 gca peak = 0.16819 (86) mri peak = 0.15968 (90) Right_Cerebellum_White_Matter (46): linear fit = 1.03 x + 0.0 (4228 voxels, overlap=0.724) Right_Cerebellum_White_Matter (46): linear fit = 1.03 x + 0.0 (4228 voxels, peak = 89), gca=89.0 gca peak = 0.41688 (64) mri peak = 0.12152 (70) Left_Amygdala (18): linear fit = 1.09 x + 0.0 (193 voxels, overlap=0.571) Left_Amygdala (18): linear fit = 1.09 x + 0.0 (193 voxels, peak = 69), gca=69.4 gca peak = 0.42394 (62) mri peak = 0.17722 (71) Right_Amygdala (54): linear fit = 1.11 x + 0.0 (158 voxels, overlap=0.041) Right_Amygdala (54): linear fit = 1.11 x + 0.0 (158 voxels, peak = 69), gca=68.5 gca peak = 0.10041 (96) mri peak = 0.09955 (89) Left_Thalamus_Proper (10): linear fit = 0.94 x + 0.0 (2904 voxels, overlap=0.467) Left_Thalamus_Proper (10): linear fit = 0.94 x + 0.0 (2904 voxels, peak = 90), gca=89.8 gca peak = 0.13978 (88) mri peak = 0.09265 (84) Right_Thalamus_Proper (49): linear fit = 0.98 x + 0.0 (2743 voxels, overlap=0.886) Right_Thalamus_Proper (49): linear fit = 0.98 x + 0.0 (2743 voxels, peak = 86), gca=85.8 gca peak = 0.08514 (81) mri peak = 0.10633 (79) Left_Putamen (12): linear fit = 0.96 x + 0.0 (1333 voxels, overlap=0.703) Left_Putamen (12): linear fit = 0.96 x + 0.0 (1333 voxels, peak = 78), gca=78.2 gca peak = 0.09624 (82) mri peak = 0.11438 (80) Right_Putamen (51): linear fit = 1.00 x + 0.0 (1224 voxels, overlap=0.847) Right_Putamen (51): linear fit = 1.00 x + 0.0 (1224 voxels, peak = 82), gca=82.0 gca peak = 0.07543 (88) mri peak = 0.10629 (88) Brain_Stem (16): linear fit = 1.01 x + 0.0 (9445 voxels, overlap=0.754) Brain_Stem (16): linear fit = 1.01 x + 0.0 (9445 voxels, peak = 89), gca=89.3 gca peak = 0.12757 (95) mri peak = 0.10328 (93) Right_VentralDC (60): linear fit = 1.00 x + 0.0 (627 voxels, overlap=0.802) Right_VentralDC (60): linear fit = 1.00 x + 0.0 (627 voxels, peak = 95), gca=94.5 gca peak = 0.17004 (92) mri peak = 0.10413 (91) Left_VentralDC (28): linear fit = 0.98 x + 0.0 (744 voxels, overlap=0.885) Left_VentralDC (28): linear fit = 0.98 x + 0.0 (744 voxels, peak = 90), gca=89.7 gca peak = 0.21361 (36) mri peak = 0.24250 (22) gca peak = 0.26069 (23) mri peak = 0.09393 (22) gca peak Unknown = 0.94427 ( 0) gca peak Left_Inf_Lat_Vent = 0.31795 (35) gca peak Third_Ventricle = 0.21361 (36) gca peak Fourth_Ventricle = 0.26069 (23) gca peak CSF = 0.14367 (38) gca peak Left_Accumbens_area = 0.57033 (70) gca peak Left_undetermined = 1.00000 (35) gca peak Left_vessel = 0.65201 (62) gca peak Left_choroid_plexus = 0.09084 (48) gca peak Right_Inf_Lat_Vent = 0.31129 (32) gca peak Right_Accumbens_area = 0.30219 (72) gca peak Right_vessel = 0.83418 (60) gca peak Right_choroid_plexus = 0.10189 (48) gca peak Fifth_Ventricle = 0.72939 (42) gca peak WM_hypointensities = 0.14821 (82) gca peak non_WM_hypointensities = 0.10354 (53) gca peak Optic_Chiasm = 0.34849 (76) not using caudate to estimate GM means estimating mean gm scale to be 1.12 x + 0.0 estimating mean wm scale to be 1.04 x + 0.0 estimating mean csf scale to be 0.76 x + 0.0 saving intensity scales to aseg.auto_noCCseg.label_intensities.txt renormalizing by structure alignment.... renormalizing input #0 gca peak = 0.19286 (19) mri peak = 0.13804 (20) Left_Lateral_Ventricle (4): linear fit = 1.02 x + 0.0 (3655 voxels, overlap=0.955) Left_Lateral_Ventricle (4): linear fit = 1.02 x + 0.0 (3655 voxels, peak = 19), gca=19.5 gca peak = 0.17416 (17) mri peak = 0.12764 (21) Right_Lateral_Ventricle (43): linear fit = 0.98 x + 0.0 (2676 voxels, overlap=0.850) Right_Lateral_Ventricle (43): linear fit = 0.98 x + 0.0 (2676 voxels, peak = 17), gca=16.6 gca peak = 0.30701 (87) mri peak = 0.08203 (89) Right_Pallidum (52): linear fit = 1.00 x + 0.0 (256 voxels, overlap=1.005) Right_Pallidum (52): linear fit = 1.00 x + 0.0 (256 voxels, peak = 87), gca=87.0 gca peak = 0.18206 (91) mri peak = 0.13333 (96) Left_Pallidum (13): linear fit = 1.03 x + 0.0 (263 voxels, overlap=0.820) Left_Pallidum (13): linear fit = 1.03 x + 0.0 (263 voxels, peak = 94), gca=94.2 gca peak = 0.23400 (68) mri peak = 0.13285 (70) Right_Hippocampus (53): linear fit = 1.00 x + 0.0 (687 voxels, overlap=0.993) Right_Hippocampus (53): linear fit = 1.00 x + 0.0 (687 voxels, peak = 68), gca=68.0 gca peak = 0.33447 (66) mri peak = 0.13143 (69) Left_Hippocampus (17): linear fit = 1.00 x + 0.0 (612 voxels, overlap=1.006) Left_Hippocampus (17): linear fit = 1.00 x + 0.0 (612 voxels, peak = 66), gca=66.0 gca peak = 0.08347 (108) mri peak = 0.06714 (110) Right_Cerebral_White_Matter (41): linear fit = 1.00 x + 0.0 (20059 voxels, overlap=0.892) Right_Cerebral_White_Matter (41): linear fit = 1.00 x + 0.0 (20059 voxels, peak = 109), gca=108.5 gca peak = 0.08673 (112) mri peak = 0.07460 (112) Left_Cerebral_White_Matter (2): linear fit = 1.00 x + 0.0 (21068 voxels, overlap=0.808) Left_Cerebral_White_Matter (2): linear fit = 1.00 x + 0.0 (21068 voxels, peak = 112), gca=112.0 gca peak = 0.06482 (75) mri peak = 0.04023 (72) Left_Cerebral_Cortex (3): linear fit = 0.99 x + 0.0 (15906 voxels, overlap=0.903) Left_Cerebral_Cortex (3): linear fit = 0.99 x + 0.0 (15906 voxels, peak = 74), gca=73.9 gca peak = 0.07393 (76) mri peak = 0.03892 (74) Right_Cerebral_Cortex (42): linear fit = 0.99 x + 0.0 (17819 voxels, overlap=0.854) Right_Cerebral_Cortex (42): linear fit = 0.99 x + 0.0 (17819 voxels, peak = 75), gca=74.9 gca peak = 0.27813 (79) mri peak = 0.14964 (78) Right_Caudate (50): linear fit = 0.99 x + 0.0 (662 voxels, overlap=1.004) Right_Caudate (50): linear fit = 0.99 x + 0.0 (662 voxels, peak = 78), gca=77.8 gca peak = 0.18176 (76) mri peak = 0.14060 (78) Left_Caudate (11): linear fit = 0.99 x + 0.0 (762 voxels, overlap=0.737) Left_Caudate (11): linear fit = 0.99 x + 0.0 (762 voxels, peak = 75), gca=74.9 gca peak = 0.09266 (69) mri peak = 0.06085 (65) Left_Cerebellum_Cortex (8): linear fit = 1.00 x + 0.0 (15810 voxels, overlap=0.969) Left_Cerebellum_Cortex (8): linear fit = 1.00 x + 0.0 (15810 voxels, peak = 69), gca=69.0 gca peak = 0.10868 (69) mri peak = 0.06242 (71) Right_Cerebellum_Cortex (47): linear fit = 1.03 x + 0.0 (16844 voxels, overlap=0.989) Right_Cerebellum_Cortex (47): linear fit = 1.03 x + 0.0 (16844 voxels, peak = 71), gca=71.4 gca peak = 0.17397 (89) mri peak = 0.14423 (89) Left_Cerebellum_White_Matter (7): linear fit = 1.00 x + 0.0 (4063 voxels, overlap=0.980) Left_Cerebellum_White_Matter (7): linear fit = 1.00 x + 0.0 (4063 voxels, peak = 89), gca=88.6 gca peak = 0.16430 (89) mri peak = 0.15968 (90) Right_Cerebellum_White_Matter (46): linear fit = 1.00 x + 0.0 (4228 voxels, overlap=0.937) Right_Cerebellum_White_Matter (46): linear fit = 1.00 x + 0.0 (4228 voxels, peak = 89), gca=89.0 gca peak = 0.32316 (69) mri peak = 0.12152 (70) Left_Amygdala (18): linear fit = 1.00 x + 0.0 (193 voxels, overlap=1.009) Left_Amygdala (18): linear fit = 1.00 x + 0.0 (193 voxels, peak = 69), gca=69.0 gca peak = 0.34312 (69) mri peak = 0.17722 (71) Right_Amygdala (54): linear fit = 1.01 x + 0.0 (158 voxels, overlap=1.007) Right_Amygdala (54): linear fit = 1.01 x + 0.0 (158 voxels, peak = 70), gca=70.0 gca peak = 0.11243 (90) mri peak = 0.09955 (89) Left_Thalamus_Proper (10): linear fit = 1.00 x + 0.0 (2904 voxels, overlap=0.952) Left_Thalamus_Proper (10): linear fit = 1.00 x + 0.0 (2904 voxels, peak = 90), gca=90.0 gca peak = 0.11840 (83) mri peak = 0.09265 (84) Right_Thalamus_Proper (49): linear fit = 1.00 x + 0.0 (2743 voxels, overlap=0.968) Right_Thalamus_Proper (49): linear fit = 1.00 x + 0.0 (2743 voxels, peak = 83), gca=83.0 gca peak = 0.08842 (78) mri peak = 0.10633 (79) Left_Putamen (12): linear fit = 1.00 x + 0.0 (1333 voxels, overlap=0.803) Left_Putamen (12): linear fit = 1.00 x + 0.0 (1333 voxels, peak = 78), gca=78.0 gca peak = 0.09624 (82) mri peak = 0.11438 (80) Right_Putamen (51): linear fit = 1.00 x + 0.0 (1224 voxels, overlap=0.856) Right_Putamen (51): linear fit = 1.00 x + 0.0 (1224 voxels, peak = 82), gca=82.0 gca peak = 0.07678 (87) mri peak = 0.10629 (88) Brain_Stem (16): linear fit = 1.00 x + 0.0 (9445 voxels, overlap=0.715) Brain_Stem (16): linear fit = 1.00 x + 0.0 (9445 voxels, peak = 87), gca=86.6 gca peak = 0.15297 (94) mri peak = 0.10328 (93) Right_VentralDC (60): linear fit = 1.00 x + 0.0 (627 voxels, overlap=0.801) Right_VentralDC (60): linear fit = 1.00 x + 0.0 (627 voxels, peak = 94), gca=93.5 gca peak = 0.15341 (90) mri peak = 0.10413 (91) Left_VentralDC (28): linear fit = 1.00 x + 0.0 (744 voxels, overlap=0.856) Left_VentralDC (28): linear fit = 1.00 x + 0.0 (744 voxels, peak = 90), gca=89.6 gca peak = 0.19613 (28) mri peak = 0.24250 (22) gca peak = 0.24420 (18) mri peak = 0.09393 (22) gca peak Unknown = 0.94427 ( 0) gca peak Left_Inf_Lat_Vent = 0.25659 (37) gca peak Third_Ventricle = 0.19613 (28) gca peak Fourth_Ventricle = 0.24420 (18) gca peak CSF = 0.21166 (31) gca peak Left_Accumbens_area = 0.51893 (71) gca peak Left_undetermined = 1.00000 (35) gca peak Left_vessel = 0.63638 (62) gca peak Left_choroid_plexus = 0.09084 (48) gca peak Right_Inf_Lat_Vent = 0.28491 (35) gca peak Right_Accumbens_area = 0.48216 (77) gca peak Right_vessel = 0.83418 (60) gca peak Right_choroid_plexus = 0.10189 (48) gca peak Fifth_Ventricle = 0.81716 (32) gca peak WM_hypointensities = 0.17438 (85) gca peak non_WM_hypointensities = 0.12111 (55) gca peak Optic_Chiasm = 0.34945 (76) not using caudate to estimate GM means estimating mean gm scale to be 1.00 x + 0.0 estimating mean wm scale to be 1.00 x + 0.0 estimating mean csf scale to be 1.00 x + 0.0 saving intensity scales to aseg.auto_noCCseg.label_intensities.txt saving sequentially combined intensity scales to aseg.auto_noCCseg.label_intensities.txt 29429 gm and wm labels changed (%20 to gray, %80 to white out of all changed labels) 537 hippocampal voxels changed. 0 amygdala voxels changed. pass 1: 63113 changed. image ll: -2.112, PF=1.000 pass 2: 9452 changed. pass 3: 3158 changed. writing labeled volume to aseg.auto_noCCseg.mgz... auto-labeling took 12 minutes and 47 seconds. mri_cc -aseg aseg.auto_noCCseg.mgz -o aseg.auto.mgz -lta /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/transforms/cc_up.lta ACC019 will read input aseg from aseg.auto_noCCseg.mgz writing aseg with cc labels to aseg.auto.mgz will write lta as /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/transforms/cc_up.lta reading aseg from /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/aseg.auto_noCCseg.mgz reading norm from /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/norm.mgz 19986 voxels in left wm, 33075 in right wm, xrange [128, 137] searching rotation angles z=[-10 4], y=[-4 10] searching scale 1 Z rot -10.5 searching scale 1 Z rot -10.2 searching scale 1 Z rot -10.0 searching scale 1 Z rot -9.7 searching scale 1 Z rot -9.5 searching scale 1 Z rot -9.2 searching scale 1 Z rot -9.0 searching scale 1 Z rot -8.7 searching scale 1 Z rot -8.5 searching scale 1 Z rot -8.2 searching scale 1 Z rot -8.0 searching scale 1 Z rot -7.7 searching scale 1 Z rot -7.5 searching scale 1 Z rot -7.2 searching scale 1 Z rot -7.0 searching scale 1 Z rot -6.7 searching scale 1 Z rot -6.5 searching scale 1 Z rot -6.2 searching scale 1 Z rot -6.0 searching scale 1 Z rot -5.7 searching scale 1 Z rot -5.5 searching scale 1 Z rot -5.2 searching scale 1 Z rot -5.0 searching scale 1 Z rot -4.7 searching scale 1 Z rot -4.5 searching scale 1 Z rot -4.2 searching scale 1 Z rot -4.0 searching scale 1 Z rot -3.7 searching scale 1 Z rot -3.5 searching scale 1 Z rot -3.2 searching scale 1 Z rot -3.0 searching scale 1 Z rot -2.7 searching scale 1 Z rot -2.5 searching scale 1 Z rot -2.2 searching scale 1 Z rot -2.0 searching scale 1 Z rot -1.7 searching scale 1 Z rot -1.5 searching scale 1 Z rot -1.2 searching scale 1 Z rot -1.0 searching scale 1 Z rot -0.7 searching scale 1 Z rot -0.5 searching scale 1 Z rot -0.2 searching scale 1 Z rot 0.0 searching scale 1 Z rot 0.3 searching scale 1 Z rot 0.5 searching scale 1 Z rot 0.8 searching scale 1 Z rot 1.0 searching scale 1 Z rot 1.3 searching scale 1 Z rot 1.5 searching scale 1 Z rot 1.8 searching scale 1 Z rot 2.0 searching scale 1 Z rot 2.3 searching scale 1 Z rot 2.5 searching scale 1 Z rot 2.8 searching scale 1 Z rot 3.0 global minimum found at slice 133.0, rotations (2.78, -3.95) final transformation (x=133.0, yr=2.777, zr=-3.954): 0.996 0.069 0.048 -15.967; -0.069 0.998 -0.003 44.729; -0.048 -0.000 0.999 30.566; 0.000 0.000 0.000 1.000; updating x range to be [125, 130] in xformed coordinates best xformed slice 128 cc center is found at 128 144 110 eigenvectors: -0.001 0.003 1.000; -0.227 -0.974 0.002; 0.974 -0.227 0.002; error in mid anterior detected - correcting... error in mid anterior detected - correcting... error in mid anterior detected - correcting... writing aseg with callosum to /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/aseg.auto.mgz... corpus callosum matter segmentation took 0.5 minutes #-------------------------------------- #@# Merge ASeg Fri Apr 5 19:44:52 CEST 2013 cp aseg.auto.mgz aseg.mgz #-------------------------------------------- #@# Intensity Normalization2 Fri Apr 5 19:44:52 CEST 2013 /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri mri_normalize -aseg aseg.mgz -mask brainmask.mgz norm.mgz brain.mgz using segmentation for initial intensity normalization using MR volume brainmask.mgz to mask input volume... reading from norm.mgz... Reading aseg aseg.mgz normalizing image... processing with aseg removing outliers in the aseg WM... 1870 control points removed Building bias image building Voronoi diagram... performing soap bubble smoothing, sigma = 0... Smoothing with sigma 8 Applying bias correction building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Iterating 2 times --------------------------------- 3d normalization pass 1 of 2 white matter peak found at 111 white matter peak found at 109 gm peak at 78 (78), valley at 47 (47) csf peak at 23, setting threshold to 59 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... --------------------------------- 3d normalization pass 2 of 2 white matter peak found at 111 white matter peak found at 110 gm peak at 78 (78), valley at 47 (47) csf peak at 23, setting threshold to 59 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Done iterating --------------------------------- writing output to brain.mgz 3D bias adjustment took 2 minutes and 57 seconds. #-------------------------------------------- #@# Mask BFS Fri Apr 5 19:47:50 CEST 2013 /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri mri_mask -T 5 brain.mgz brainmask.mgz brain.finalsurfs.mgz threshold mask volume at 5 DoAbs = 0 Found 1305422 voxels in mask Writing masked volume to brain.finalsurfs.mgz...done. #-------------------------------------------- #@# WM Segmentation Fri Apr 5 19:47:52 CEST 2013 mri_segment brain.mgz wm.seg.mgz doing initial intensity segmentation... using local statistics to label ambiguous voxels... computing class statistics for intensity windows... WM (103.0): 102.7 +- 6.4 [80.0 --> 125.0] GM (75.0) : 72.9 +- 10.9 [30.0 --> 96.0] setting bottom of white matter range to 83.9 setting top of gray matter range to 94.8 doing initial intensity segmentation... using local statistics to label ambiguous voxels... using local geometry to label remaining ambiguous voxels... reclassifying voxels using Gaussian border classifier... removing voxels with positive offset direction... smoothing T1 volume with sigma = 0.250 removing 1-dimensional structures... 1980 sparsely connected voxels removed... thickening thin strands.... 20 segments, 3034 filled 43 bright non-wm voxels segmented. 1797 diagonally connected voxels added... white matter segmentation took 1.2 minutes writing output to wm.seg.mgz... mri_edit_wm_with_aseg -keep-in wm.seg.mgz brain.mgz aseg.mgz wm.asegedit.mgz preserving editing changes in input volume... auto filling took 0.46 minutes reading wm segmentation from wm.seg.mgz... 191 voxels added to wm to prevent paths from MTL structures to cortex 1777 additional wm voxels added 0 additional wm voxels added SEG EDIT: 54414 voxels turned on, 23791 voxels turned off. propagating editing to output volume from wm.seg.mgz 115,126,128 old 0 new 0 115,126,128 old 0 new 0 writing edited volume to wm.asegedit.mgz.... mri_pretess wm.asegedit.mgz wm norm.mgz wm.mgz Iteration Number : 1 pass 1 (xy+): 24 found - 24 modified | TOTAL: 24 pass 2 (xy+): 0 found - 24 modified | TOTAL: 24 pass 1 (xy-): 22 found - 22 modified | TOTAL: 46 pass 2 (xy-): 0 found - 22 modified | TOTAL: 46 pass 1 (yz+): 23 found - 23 modified | TOTAL: 69 pass 2 (yz+): 0 found - 23 modified | TOTAL: 69 pass 1 (yz-): 16 found - 16 modified | TOTAL: 85 pass 2 (yz-): 0 found - 16 modified | TOTAL: 85 pass 1 (xz+): 21 found - 21 modified | TOTAL: 106 pass 2 (xz+): 0 found - 21 modified | TOTAL: 106 pass 1 (xz-): 21 found - 21 modified | TOTAL: 127 pass 2 (xz-): 0 found - 21 modified | TOTAL: 127 Iteration Number : 1 pass 1 (+++): 12 found - 12 modified | TOTAL: 12 pass 2 (+++): 0 found - 12 modified | TOTAL: 12 pass 1 (+++): 4 found - 4 modified | TOTAL: 16 pass 2 (+++): 0 found - 4 modified | TOTAL: 16 pass 1 (+++): 12 found - 12 modified | TOTAL: 28 pass 2 (+++): 0 found - 12 modified | TOTAL: 28 pass 1 (+++): 16 found - 16 modified | TOTAL: 44 pass 2 (+++): 0 found - 16 modified | TOTAL: 44 Iteration Number : 1 pass 1 (++): 35 found - 35 modified | TOTAL: 35 pass 2 (++): 0 found - 35 modified | TOTAL: 35 pass 1 (+-): 41 found - 41 modified | TOTAL: 76 pass 2 (+-): 0 found - 41 modified | TOTAL: 76 pass 1 (--): 50 found - 50 modified | TOTAL: 126 pass 2 (--): 0 found - 50 modified | TOTAL: 126 pass 1 (-+): 48 found - 48 modified | TOTAL: 174 pass 2 (-+): 0 found - 48 modified | TOTAL: 174 Iteration Number : 2 pass 1 (xy+): 2 found - 2 modified | TOTAL: 2 pass 2 (xy+): 0 found - 2 modified | TOTAL: 2 pass 1 (xy-): 7 found - 7 modified | TOTAL: 9 pass 2 (xy-): 0 found - 7 modified | TOTAL: 9 pass 1 (yz+): 3 found - 3 modified | TOTAL: 12 pass 2 (yz+): 0 found - 3 modified | TOTAL: 12 pass 1 (yz-): 5 found - 5 modified | TOTAL: 17 pass 2 (yz-): 0 found - 5 modified | TOTAL: 17 pass 1 (xz+): 4 found - 4 modified | TOTAL: 21 pass 2 (xz+): 0 found - 4 modified | TOTAL: 21 pass 1 (xz-): 1 found - 1 modified | TOTAL: 22 pass 2 (xz-): 0 found - 1 modified | TOTAL: 22 Iteration Number : 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 2 pass 1 (++): 3 found - 3 modified | TOTAL: 3 pass 2 (++): 0 found - 3 modified | TOTAL: 3 pass 1 (+-): 2 found - 2 modified | TOTAL: 5 pass 2 (+-): 0 found - 2 modified | TOTAL: 5 pass 1 (--): 2 found - 2 modified | TOTAL: 7 pass 2 (--): 0 found - 2 modified | TOTAL: 7 pass 1 (-+): 1 found - 1 modified | TOTAL: 8 pass 2 (-+): 0 found - 1 modified | TOTAL: 8 Iteration Number : 3 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 1 found - 1 modified | TOTAL: 1 pass 2 (xy-): 0 found - 1 modified | TOTAL: 1 pass 1 (yz+): 0 found - 0 modified | TOTAL: 1 pass 1 (yz-): 0 found - 0 modified | TOTAL: 1 pass 1 (xz+): 0 found - 0 modified | TOTAL: 1 pass 1 (xz-): 0 found - 0 modified | TOTAL: 1 Iteration Number : 3 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 3 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Iteration Number : 4 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 0 found - 0 modified | TOTAL: 0 pass 1 (yz-): 0 found - 0 modified | TOTAL: 0 pass 1 (xz+): 0 found - 0 modified | TOTAL: 0 pass 1 (xz-): 0 found - 0 modified | TOTAL: 0 Iteration Number : 4 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 4 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Total Number of Modified Voxels = 376 (out of 495944: 0.075815) binarizing input wm segmentation... Ambiguous edge configurations... mri_pretess done #-------------------------------------------- #@# Fill Fri Apr 5 19:49:34 CEST 2013 /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri mri_fill -a ../scripts/ponscc.cut.log -xform transforms/talairach.lta -segmentation aseg.auto_noCCseg.mgz wm.mgz filled.mgz logging cutting plane coordinates to ../scripts/ponscc.cut.log... INFO: Using transforms/talairach.lta and its offset for Talairach volume ... using segmentation aseg.auto_noCCseg.mgz... reading input volume...done. searching for cutting planes...voxel to talairach voxel transform 1.029 0.092 0.018 -20.203; -0.099 1.223 0.492 -46.135; 0.018 -0.432 0.964 44.373; 0.000 0.000 0.000 1.000; voxel to talairach voxel transform 1.029 0.092 0.018 -20.203; -0.099 1.223 0.492 -46.135; 0.018 -0.432 0.964 44.373; 0.000 0.000 0.000 1.000; reading segmented volume aseg.auto_noCCseg.mgz... Looking for area (min, max) = (350, 1400) area[0] = 1714 (min = 350, max = 1400), aspect = 0.55 (min = 0.10, max = 0.75) need search nearby using seed (128, 111, 88), TAL = (0.0, -40.0, 17.0) talairach voxel to voxel transform 0.965 -0.067 0.016 15.683; 0.072 0.688 -0.352 48.833; 0.015 0.309 0.879 -24.429; 0.000 0.000 0.000 1.000; segmentation indicates cc at (128, 111, 88) --> (0.0, -40.0, 17.0) done. writing output to filled.mgz... filling took 0.8 minutes talairach cc position changed to (0.00, -40.00, 17.00) Erasing brainstem...done. seed_search_size = 9, min_neighbors = 5 search rh wm seed point around talairach space:(18.00, -40.00, 17.00) SRC: (115.79, 102.13, 88.88) search lh wm seed point around talairach space (-18.00, -40.00, 17.00), SRC: (150.53, 104.72, 89.41) compute mri_fill using aseg Erasing Brain Stem and Cerebellum ... Define left and right masks using aseg: Building Voronoi diagram ... Using the Voronoi diagram to separate WM into two hemispheres ... Find the largest connected component for each hemisphere ... #-------------------------------------------- #@# Tessellate lh Fri Apr 5 19:50:25 CEST 2013 /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/scripts mri_pretess ../mri/filled.mgz 255 ../mri/norm.mgz ../mri/filled-pretess255.mgz Iteration Number : 1 pass 1 (xy+): 1 found - 1 modified | TOTAL: 1 pass 2 (xy+): 0 found - 1 modified | TOTAL: 1 pass 1 (xy-): 1 found - 1 modified | TOTAL: 2 pass 2 (xy-): 0 found - 1 modified | TOTAL: 2 pass 1 (yz+): 1 found - 1 modified | TOTAL: 3 pass 2 (yz+): 0 found - 1 modified | TOTAL: 3 pass 1 (yz-): 2 found - 2 modified | TOTAL: 5 pass 2 (yz-): 0 found - 2 modified | TOTAL: 5 pass 1 (xz+): 1 found - 1 modified | TOTAL: 6 pass 2 (xz+): 0 found - 1 modified | TOTAL: 6 pass 1 (xz-): 2 found - 2 modified | TOTAL: 8 pass 2 (xz-): 0 found - 2 modified | TOTAL: 8 Iteration Number : 1 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 1 pass 1 (++): 1 found - 1 modified | TOTAL: 1 pass 2 (++): 0 found - 1 modified | TOTAL: 1 pass 1 (+-): 0 found - 0 modified | TOTAL: 1 pass 1 (--): 0 found - 0 modified | TOTAL: 1 pass 1 (-+): 0 found - 0 modified | TOTAL: 1 Iteration Number : 2 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 0 found - 0 modified | TOTAL: 0 pass 1 (yz-): 0 found - 0 modified | TOTAL: 0 pass 1 (xz+): 0 found - 0 modified | TOTAL: 0 pass 1 (xz-): 0 found - 0 modified | TOTAL: 0 Iteration Number : 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 2 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Total Number of Modified Voxels = 9 (out of 240413: 0.003744) Ambiguous edge configurations... mri_pretess done mri_tessellate ../mri/filled-pretess255.mgz 255 ../surf/lh.orig.nofix $Id: mri_tessellate.c,v 1.36 2011/03/02 00:04:25 nicks Exp $ $Id: mrisurf.c,v 1.693.2.4 2012/11/07 22:38:00 nicks Exp $ slice 40: 1280 vertices, 1413 faces slice 50: 6836 vertices, 7065 faces slice 60: 15816 vertices, 16174 faces slice 70: 26333 vertices, 26680 faces slice 80: 36374 vertices, 36695 faces slice 90: 45881 vertices, 46211 faces slice 100: 55927 vertices, 56311 faces slice 110: 65804 vertices, 66166 faces slice 120: 75057 vertices, 75405 faces slice 130: 84003 vertices, 84351 faces slice 140: 92355 vertices, 92651 faces slice 150: 99764 vertices, 100034 faces slice 160: 106608 vertices, 106817 faces slice 170: 111954 vertices, 112167 faces slice 180: 115960 vertices, 116101 faces slice 190: 117150 vertices, 117172 faces slice 200: 117150 vertices, 117172 faces slice 210: 117150 vertices, 117172 faces slice 220: 117150 vertices, 117172 faces slice 230: 117150 vertices, 117172 faces slice 240: 117150 vertices, 117172 faces slice 250: 117150 vertices, 117172 faces using the conformed surface RAS to save vertex points... writing ../surf/lh.orig.nofix using vox2ras matrix: -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; rm -f ../mri/filled-pretess255.mgz mris_extract_main_component ../surf/lh.orig.nofix ../surf/lh.orig.nofix counting number of connected components... 117150 voxel in cpt #1: X=-22 [v=117150,e=351516,f=234344] located at (-31.500341, -24.239223, 28.413393) For the whole surface: X=-22 [v=117150,e=351516,f=234344] One single component has been found nothing to do done #-------------------------------------------- #@# Smooth1 lh Fri Apr 5 19:50:30 CEST 2013 mris_smooth -nw -seed 1234 ../surf/lh.orig.nofix ../surf/lh.smoothwm.nofix /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/scripts setting seed for random number generator to 1234 smoothing surface tessellation for 10 iterations... smoothing complete - recomputing first and second fundamental forms... #-------------------------------------------- #@# Inflation1 lh Fri Apr 5 19:50:32 CEST 2013 mris_inflate -no-save-sulc ../surf/lh.smoothwm.nofix ../surf/lh.inflated.nofix /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/scripts avg radius = 44.9 mm, total surface area = 61851 mm^2 writing inflated surface to ../surf/lh.inflated.nofix inflation took 0.4 minutes Not saving sulc step 000: RMS=0.101 (target=0.015) step 005: RMS=0.074 (target=0.015) step 010: RMS=0.054 (target=0.015) step 015: RMS=0.046 (target=0.015) step 020: RMS=0.040 (target=0.015) step 025: RMS=0.035 (target=0.015) step 030: RMS=0.032 (target=0.015) step 035: RMS=0.030 (target=0.015) step 040: RMS=0.029 (target=0.015) step 045: RMS=0.028 (target=0.015) step 050: RMS=0.027 (target=0.015) step 055: RMS=0.026 (target=0.015) step 060: RMS=0.026 (target=0.015) inflation complete. Not saving sulc #-------------------------------------------- #@# QSphere lh Fri Apr 5 19:50:59 CEST 2013 /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/scripts mris_sphere -q -seed 1234 ../surf/lh.inflated.nofix ../surf/lh.qsphere.nofix doing quick spherical unfolding. setting seed for random number genererator to 1234 $Id: mris_sphere.c,v 1.57 2011/03/02 00:04:34 nicks Exp $ $Id: mrisurf.c,v 1.693.2.4 2012/11/07 22:38:00 nicks Exp $ reading original vertex positions... unfolding cortex into spherical form... surface projected - minimizing metric distortion... vertex spacing 1.06 +- 0.60 (0.00-->7.10) (max @ vno 78439 --> 78440) face area 0.03 +- 0.04 (-0.30-->0.55) scaling brain by 0.342... inflating to sphere (rms error < 2.00) 000: dt: 0.0000, rms radial error=175.985, avgs=0 005/300: dt: 0.9000, rms radial error=175.726, avgs=0 010/300: dt: 0.9000, rms radial error=175.169, avgs=0 015/300: dt: 0.9000, rms radial error=174.437, avgs=0 020/300: dt: 0.9000, rms radial error=173.604, avgs=0 025/300: dt: 0.9000, rms radial error=172.709, avgs=0 030/300: dt: 0.9000, rms radial error=171.782, avgs=0 035/300: dt: 0.9000, rms radial error=170.836, avgs=0 040/300: dt: 0.9000, rms radial error=169.882, avgs=0 045/300: dt: 0.9000, rms radial error=168.926, avgs=0 050/300: dt: 0.9000, rms radial error=167.978, avgs=0 055/300: dt: 0.9000, rms radial error=167.033, avgs=0 060/300: dt: 0.9000, rms radial error=166.093, avgs=0 065/300: dt: 0.9000, rms radial error=165.159, avgs=0 070/300: dt: 0.9000, rms radial error=164.231, avgs=0 075/300: dt: 0.9000, rms radial error=163.308, avgs=0 080/300: dt: 0.9000, rms radial error=162.390, avgs=0 085/300: dt: 0.9000, rms radial error=161.477, avgs=0 090/300: dt: 0.9000, rms radial error=160.569, avgs=0 095/300: dt: 0.9000, rms radial error=159.666, avgs=0 100/300: dt: 0.9000, rms radial error=158.767, avgs=0 105/300: dt: 0.9000, rms radial error=157.874, avgs=0 110/300: dt: 0.9000, rms radial error=156.986, avgs=0 115/300: dt: 0.9000, rms radial error=156.102, avgs=0 120/300: dt: 0.9000, rms radial error=155.223, avgs=0 125/300: dt: 0.9000, rms radial error=154.349, avgs=0 130/300: dt: 0.9000, rms radial error=153.480, avgs=0 135/300: dt: 0.9000, rms radial error=152.615, avgs=0 140/300: dt: 0.9000, rms radial error=151.755, avgs=0 145/300: dt: 0.9000, rms radial error=150.900, avgs=0 150/300: dt: 0.9000, rms radial error=150.050, avgs=0 155/300: dt: 0.9000, rms radial error=149.204, avgs=0 160/300: dt: 0.9000, rms radial error=148.362, avgs=0 165/300: dt: 0.9000, rms radial error=147.526, avgs=0 170/300: dt: 0.9000, rms radial error=146.694, avgs=0 175/300: dt: 0.9000, rms radial error=145.866, avgs=0 180/300: dt: 0.9000, rms radial error=145.043, avgs=0 185/300: dt: 0.9000, rms radial error=144.224, avgs=0 190/300: dt: 0.9000, rms radial error=143.410, avgs=0 195/300: dt: 0.9000, rms radial error=142.601, avgs=0 200/300: dt: 0.9000, rms radial error=141.796, avgs=0 205/300: dt: 0.9000, rms radial error=140.996, avgs=0 210/300: dt: 0.9000, rms radial error=140.200, avgs=0 215/300: dt: 0.9000, rms radial error=139.409, avgs=0 220/300: dt: 0.9000, rms radial error=138.621, avgs=0 225/300: dt: 0.9000, rms radial error=137.839, avgs=0 230/300: dt: 0.9000, rms radial error=137.060, avgs=0 235/300: dt: 0.9000, rms radial error=136.286, avgs=0 240/300: dt: 0.9000, rms radial error=135.517, avgs=0 245/300: dt: 0.9000, rms radial error=134.751, avgs=0 250/300: dt: 0.9000, rms radial error=133.990, avgs=0 255/300: dt: 0.9000, rms radial error=133.234, avgs=0 260/300: dt: 0.9000, rms radial error=132.481, avgs=0 265/300: dt: 0.9000, rms radial error=131.733, avgs=0 270/300: dt: 0.9000, rms radial error=130.989, avgs=0 275/300: dt: 0.9000, rms radial error=130.249, avgs=0 280/300: dt: 0.9000, rms radial error=129.514, avgs=0 285/300: dt: 0.9000, rms radial error=128.782, avgs=0 290/300: dt: 0.9000, rms radial error=128.055, avgs=0 295/300: dt: 0.9000, rms radial error=127.332, avgs=0 300/300: dt: 0.9000, rms radial error=126.613, avgs=0 spherical inflation complete. epoch 1 (K=10.0), pass 1, starting sse = 13228.82 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.00/10 = 0.00013 epoch 2 (K=40.0), pass 1, starting sse = 2076.03 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.00/10 = 0.00006 epoch 3 (K=160.0), pass 1, starting sse = 197.48 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.07/11 = 0.00645 epoch 4 (K=640.0), pass 1, starting sse = 11.67 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.08/11 = 0.00757 final writing spherical brain to ../surf/lh.qsphere.nofix spherical transformation took 0.05 hours distance error %100000.00 #-------------------------------------------- #@# Fix Topology lh Fri Apr 5 19:54:00 CEST 2013 cp ../surf/lh.orig.nofix ../surf/lh.orig cp ../surf/lh.inflated.nofix ../surf/lh.inflated /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/scripts mris_fix_topology -mgz -sphere qsphere.nofix -ga -seed 1234 ACC019 lh reading spherical homeomorphism from 'qsphere.nofix' using genetic algorithm with optimized parameters setting seed for random number genererator to 1234 ************************************************************* Topology Correction Parameters retessellation mode: genetic search number of patches/generation : 10 number of generations : 10 surface mri loglikelihood coefficient : 1.0 volume mri loglikelihood coefficient : 10.0 normal dot loglikelihood coefficient : 1.0 quadratic curvature loglikelihood coefficient : 1.0 volume resolution : 2 eliminate vertices during search : 1 initial patch selection : 1 select all defect vertices : 0 ordering dependant retessellation: 0 use precomputed edge table : 0 smooth retessellated patch : 2 match retessellated patch : 1 verbose mode : 0 ************************************************************* INFO: assuming .mgz format $Id: mris_fix_topology.c,v 1.48 2011/03/02 00:04:32 nicks Exp $ $Id: mrisurf.c,v 1.693.2.4 2012/11/07 22:38:00 nicks Exp $ before topology correction, eno=-22 (nv=117150, nf=234344, ne=351516, g=12) using quasi-homeomorphic spherical map to tessellate cortical surface... Correction of the Topology Finding true center and radius of Spherical Surface...done Surface centered at (0,0,0) with radius 100.0 in 9 iterations marking ambiguous vertices... 2778 ambiguous faces found in tessellation segmenting defects... 25 defects found, arbitrating ambiguous regions... analyzing neighboring defects... -merging segment 9 into 7 24 defects to be corrected 0 vertices coincident reading input surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.qsphere.nofix... reading brain volume from brain... reading wm segmentation from wm... Computing Initial Surface Statistics -face loglikelihood: -9.2100 (-4.6050) -vertex loglikelihood: -6.1157 (-3.0578) -normal dot loglikelihood: -3.6675 (-3.6675) -quad curv loglikelihood: -5.9240 (-2.9620) Total Loglikelihood : -24.9171 CORRECTING DEFECT 0 (vertices=20, convex hull=22) After retessellation of defect 0, euler #=-22 (115459,345720,230239) : difference with theory (-21) = 1 CORRECTING DEFECT 1 (vertices=20, convex hull=76) After retessellation of defect 1, euler #=-21 (115468,345778,230289) : difference with theory (-20) = 1 CORRECTING DEFECT 2 (vertices=12, convex hull=17) After retessellation of defect 2, euler #=-20 (115468,345782,230294) : difference with theory (-19) = 1 CORRECTING DEFECT 3 (vertices=26, convex hull=48) After retessellation of defect 3, euler #=-19 (115477,345828,230332) : difference with theory (-18) = 1 CORRECTING DEFECT 4 (vertices=29, convex hull=24) After retessellation of defect 4, euler #=-18 (115477,345834,230339) : difference with theory (-17) = 1 CORRECTING DEFECT 5 (vertices=16, convex hull=21) After retessellation of defect 5, euler #=-17 (115479,345845,230349) : difference with theory (-16) = 1 CORRECTING DEFECT 6 (vertices=28, convex hull=54) After retessellation of defect 6, euler #=-16 (115488,345894,230390) : difference with theory (-15) = 1 CORRECTING DEFECT 7 (vertices=83, convex hull=150) After retessellation of defect 7, euler #=-14 (115503,346013,230496) : difference with theory (-14) = 0 CORRECTING DEFECT 8 (vertices=25, convex hull=26) After retessellation of defect 8, euler #=-13 (115506,346031,230512) : difference with theory (-13) = 0 CORRECTING DEFECT 9 (vertices=23, convex hull=52) After retessellation of defect 9, euler #=-12 (115520,346091,230559) : difference with theory (-12) = 0 CORRECTING DEFECT 10 (vertices=330, convex hull=118) After retessellation of defect 10, euler #=-11 (115557,346257,230689) : difference with theory (-11) = 0 CORRECTING DEFECT 11 (vertices=408, convex hull=308) After retessellation of defect 11, euler #=-10 (115732,346933,231191) : difference with theory (-10) = 0 CORRECTING DEFECT 12 (vertices=5, convex hull=26) After retessellation of defect 12, euler #=-9 (115734,346946,231203) : difference with theory (-9) = 0 CORRECTING DEFECT 13 (vertices=39, convex hull=38) After retessellation of defect 13, euler #=-8 (115739,346975,231228) : difference with theory (-8) = 0 CORRECTING DEFECT 14 (vertices=50, convex hull=82) After retessellation of defect 14, euler #=-7 (115764,347084,231313) : difference with theory (-7) = 0 CORRECTING DEFECT 15 (vertices=43, convex hull=27) After retessellation of defect 15, euler #=-6 (115769,347108,231333) : difference with theory (-6) = 0 CORRECTING DEFECT 16 (vertices=89, convex hull=80) After retessellation of defect 16, euler #=-5 (115786,347195,231404) : difference with theory (-5) = 0 CORRECTING DEFECT 17 (vertices=20, convex hull=21) After retessellation of defect 17, euler #=-4 (115789,347208,231415) : difference with theory (-4) = 0 CORRECTING DEFECT 18 (vertices=234, convex hull=68) After retessellation of defect 18, euler #=-3 (115805,347285,231477) : difference with theory (-3) = 0 CORRECTING DEFECT 19 (vertices=10, convex hull=32) After retessellation of defect 19, euler #=-2 (115807,347301,231492) : difference with theory (-2) = 0 CORRECTING DEFECT 20 (vertices=10, convex hull=23) After retessellation of defect 20, euler #=-1 (115810,347316,231505) : difference with theory (-1) = 0 CORRECTING DEFECT 21 (vertices=40, convex hull=35) After retessellation of defect 21, euler #=0 (115814,347337,231523) : difference with theory (0) = 0 CORRECTING DEFECT 22 (vertices=89, convex hull=150) After retessellation of defect 22, euler #=1 (115870,347579,231710) : difference with theory (1) = 0 CORRECTING DEFECT 23 (vertices=45, convex hull=69) After retessellation of defect 23, euler #=2 (115897,347685,231790) : difference with theory (2) = 0 computing original vertex metric properties... storing new metric properties... computing tessellation statistics... vertex spacing 0.88 +- 0.21 (0.10-->6.03) (max @ vno 75192 --> 116218) face area 0.00 +- 0.00 (0.00-->0.00) performing soap bubble on retessellated vertices for 0 iterations... vertex spacing 0.88 +- 0.21 (0.10-->6.03) (max @ vno 75192 --> 116218) face area 0.00 +- 0.00 (0.00-->0.00) tessellation finished, orienting corrected surface... 74 mutations (35.6%), 134 crossovers (64.4%), 108 vertices were eliminated building final representation... 1253 vertices and 0 faces have been removed from triangulation after topology correction, eno=2 (nv=115897, nf=231790, ne=347685, g=0) writing corrected surface to /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.orig... 0.000 % of the vertices (0 vertices) exhibit an orientation change topology fixing took 11.1 minutes 0 defective edges removing intersecting faces 000: 90 intersecting mris_euler_number ../surf/lh.orig euler # = v-e+f = 2g-2: 115897 - 347685 + 231790 = 2 --> 0 holes F =2V-4: 231790 = 231794-4 (0) 2E=3F: 695370 = 695370 (0) total defect index = 0 /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/scripts mris_remove_intersection ../surf/lh.orig ../surf/lh.orig intersection removal took 0.00 hours removing intersecting faces 000: 2 intersecting writing corrected surface to ../surf/lh.orig rm ../surf/lh.inflated #-------------------------------------------- #@# Make White Surf lh Fri Apr 5 20:05:09 CEST 2013 /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/scripts mris_make_surfaces -noaparc -whiteonly -mgz -T1 brain.finalsurfs ACC019 lh only generating white matter surface not using aparc to prevent surfaces crossing the midline INFO: assuming MGZ format for volumes. using brain.finalsurfs as T1 volume... $Id: mris_make_surfaces.c,v 1.127.2.3 2012/11/07 19:57:28 nicks Exp $ $Id: mrisurf.c,v 1.693.2.4 2012/11/07 22:38:00 nicks Exp $ reading volume /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/filled.mgz... reading volume /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/brain.finalsurfs.mgz... reading volume /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/wm.mgz... 9062 bright wm thresholded. 54 bright non-wm voxels segmented. reading original surface position from /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.orig... computing class statistics... border white: 226967 voxels (1.35%) border gray 238004 voxels (1.42%) WM (95.0): 96.0 +- 7.0 [70.0 --> 110.0] GM (85.0) : 82.4 +- 11.7 [30.0 --> 110.0] setting MIN_GRAY_AT_WHITE_BORDER to 61.3 (was 70) setting MAX_BORDER_WHITE to 109.0 (was 105) setting MIN_BORDER_WHITE to 73.0 (was 85) setting MAX_CSF to 37.8 (was 40) setting MAX_GRAY to 95.0 (was 95) setting MAX_GRAY_AT_CSF_BORDER to 67.1 (was 75) setting MIN_GRAY_AT_CSF_BORDER to 37.8 (was 40) repositioning cortical surface to gray/white boundary reading volume /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/aseg.mgz... smoothing T1 volume with sigma = 2.000 vertex spacing 0.82 +- 0.21 (0.02-->4.02) (max @ vno 75192 --> 115618) face area 0.28 +- 0.12 (0.00-->3.31) mean absolute distance = 1.33 +- 1.49 4155 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... smoothing contralateral hemisphere... intensity peaks found at WM=102, GM=73 using class modes intead of means.... mean inside = 95.0, mean outside = 79.3 smoothing surface for 5 iterations... inhibiting deformation at non-cortical midline structures... removing 3 vertex label from ripped group mean border=88.7, 103 (103) missing vertices, mean dist -0.4 [1.7 (%51.1)->0.8 (%48.9))] %35 local maxima, %53 large gradients and % 7 min vals, 0 gradients ignored tol=1.0e-04, sigma=2.0, host=linux, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 0 randomSeed 0 smoothing T1 volume with sigma = 1.000 vertex spacing 0.87 +- 0.24 (0.10-->4.37) (max @ vno 75192 --> 115618) face area 0.28 +- 0.13 (0.00-->3.13) mean absolute distance = 0.74 +- 1.04 4346 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=3571675.0, rms=8.34 001: dt: 0.5000, sse=4368314.0, rms=5.314 (0.000%) 002: dt: 0.5000, sse=4570905.5, rms=3.515 (0.000%) 003: dt: 0.5000, sse=4789412.0, rms=2.776 (0.000%) 004: dt: 0.5000, sse=4929627.5, rms=2.547 (0.000%) 005: dt: 0.5000, sse=4972288.0, rms=2.484 (0.000%) rms = 2.46, time step reduction 1 of 3 to 0.250... 006: dt: 0.5000, sse=5005686.0, rms=2.461 (0.000%) 007: dt: 0.2500, sse=3016365.0, rms=1.618 (0.000%) 008: dt: 0.2500, sse=2769468.0, rms=1.454 (0.000%) rms = 1.42, time step reduction 2 of 3 to 0.125... 009: dt: 0.2500, sse=2692022.8, rms=1.422 (0.000%) rms = 1.40, time step reduction 3 of 3 to 0.062... 010: dt: 0.1250, sse=2659327.0, rms=1.400 (0.000%) positioning took 0.6 minutes inhibiting deformation at non-cortical midline structures... removing 3 vertex label from ripped group removing 3 vertex label from ripped group removing 2 vertex label from ripped group removing 3 vertex label from ripped group removing 2 vertex label from ripped group removing 3 vertex label from ripped group removing 3 vertex label from ripped group removing 4 vertex label from ripped group mean border=89.0, 85 (52) missing vertices, mean dist -0.2 [1.1 (%44.9)->0.4 (%55.1))] %53 local maxima, %39 large gradients and % 2 min vals, 0 gradients ignored tol=1.0e-04, sigma=1.0, host=linux, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 vertex spacing 0.86 +- 0.24 (0.08-->4.12) (max @ vno 75192 --> 115618) face area 0.31 +- 0.15 (0.00-->3.50) mean absolute distance = 0.50 +- 0.76 4429 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=3048100.2, rms=4.22 011: dt: 0.5000, sse=3425833.0, rms=2.715 (0.000%) 012: dt: 0.5000, sse=3849321.8, rms=2.251 (0.000%) rms = 2.20, time step reduction 1 of 3 to 0.250... 013: dt: 0.5000, sse=4074220.5, rms=2.201 (0.000%) 014: dt: 0.2500, sse=3008427.5, rms=1.449 (0.000%) 015: dt: 0.2500, sse=2846546.0, rms=1.303 (0.000%) rms = 1.27, time step reduction 2 of 3 to 0.125... 016: dt: 0.2500, sse=2776288.2, rms=1.274 (0.000%) rms = 1.25, time step reduction 3 of 3 to 0.062... 017: dt: 0.1250, sse=2751893.0, rms=1.253 (0.000%) positioning took 0.4 minutes inhibiting deformation at non-cortical midline structures... removing 4 vertex label from ripped group removing 1 vertex label from ripped group removing 3 vertex label from ripped group mean border=90.5, 54 (24) missing vertices, mean dist -0.2 [0.6 (%57.1)->0.3 (%42.9))] %71 local maxima, %23 large gradients and % 1 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.5, host=linux, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 vertex spacing 0.86 +- 0.24 (0.10-->4.06) (max @ vno 75192 --> 115618) face area 0.31 +- 0.15 (0.00-->3.48) mean absolute distance = 0.38 +- 0.60 3431 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=2937610.0, rms=3.23 018: dt: 0.5000, sse=3244938.5, rms=1.988 (0.000%) 019: dt: 0.5000, sse=3578697.0, rms=1.879 (0.000%) rms = 1.93, time step reduction 1 of 3 to 0.250... 020: dt: 0.2500, sse=3158567.5, rms=1.434 (0.000%) 021: dt: 0.2500, sse=3006833.8, rms=1.208 (0.000%) rms = 1.18, time step reduction 2 of 3 to 0.125... 022: dt: 0.2500, sse=2941601.2, rms=1.179 (0.000%) rms = 1.16, time step reduction 3 of 3 to 0.062... 023: dt: 0.1250, sse=2911811.2, rms=1.164 (0.000%) positioning took 0.4 minutes inhibiting deformation at non-cortical midline structures... removing 3 vertex label from ripped group removing 1 vertex label from ripped group removing 2 vertex label from ripped group mean border=91.0, 59 (23) missing vertices, mean dist -0.1 [0.5 (%52.0)->0.3 (%48.0))] %79 local maxima, %15 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.2, host=linux, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 writing white matter surface to /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.white... writing smoothed curvature to lh.curv 000: dt: 0.0000, sse=2963893.8, rms=1.99 024: dt: 0.5000, sse=3675392.2, rms=1.356 (0.000%) rms = 1.62, time step reduction 1 of 3 to 0.250... 025: dt: 0.2500, sse=3404595.0, rms=1.075 (0.000%) 026: dt: 0.2500, sse=3296324.2, rms=1.001 (0.000%) rms = 0.98, time step reduction 2 of 3 to 0.125... 027: dt: 0.2500, sse=3321605.5, rms=0.975 (0.000%) rms = 0.97, time step reduction 3 of 3 to 0.062... 028: dt: 0.1250, sse=3318790.5, rms=0.971 (0.000%) positioning took 0.4 minutes inhibiting deformation at non-cortical midline structures... removing 1 vertex label from ripped group generating cortex label... 25 non-cortical segments detected only using segment with 1453 vertices erasing segment 1 (vno[0] = 64376) erasing segment 2 (vno[0] = 68840) erasing segment 3 (vno[0] = 71875) erasing segment 4 (vno[0] = 74221) erasing segment 5 (vno[0] = 74378) erasing segment 6 (vno[0] = 76673) erasing segment 7 (vno[0] = 79412) erasing segment 8 (vno[0] = 81875) erasing segment 9 (vno[0] = 82571) erasing segment 10 (vno[0] = 83390) erasing segment 11 (vno[0] = 84529) erasing segment 12 (vno[0] = 86017) erasing segment 13 (vno[0] = 86690) erasing segment 14 (vno[0] = 88362) erasing segment 15 (vno[0] = 88387) erasing segment 16 (vno[0] = 89142) erasing segment 17 (vno[0] = 89199) erasing segment 18 (vno[0] = 90774) erasing segment 19 (vno[0] = 90826) erasing segment 20 (vno[0] = 91494) erasing segment 21 (vno[0] = 91503) erasing segment 22 (vno[0] = 92269) erasing segment 23 (vno[0] = 93040) erasing segment 24 (vno[0] = 115773) writing cortex label to /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/label/lh.cortex.label... LabelWrite: saving to /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/label/lh.cortex.label writing curvature file /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.curv writing smoothed area to lh.area writing curvature file /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.area vertex spacing 0.86 +- 0.24 (0.07-->4.14) (max @ vno 91493 --> 91497) face area 0.31 +- 0.15 (0.00-->3.48) refinement took 2.9 minutes #-------------------------------------------- #@# Smooth2 lh Fri Apr 5 20:08:06 CEST 2013 mris_smooth -n 3 -nw -seed 1234 ../surf/lh.white ../surf/lh.smoothwm /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/scripts smoothing for 3 iterations setting seed for random number generator to 1234 smoothing surface tessellation for 3 iterations... smoothing complete - recomputing first and second fundamental forms... #-------------------------------------------- #@# Inflation2 lh Fri Apr 5 20:08:09 CEST 2013 /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/scripts mris_inflate ../surf/lh.smoothwm ../surf/lh.inflated avg radius = 45.0 mm, total surface area = 65836 mm^2 writing inflated surface to ../surf/lh.inflated writing sulcal depths to ../surf/lh.sulc step 000: RMS=0.110 (target=0.015) step 005: RMS=0.077 (target=0.015) step 010: RMS=0.055 (target=0.015) step 015: RMS=0.044 (target=0.015) step 020: RMS=0.038 (target=0.015) step 025: RMS=0.031 (target=0.015) step 030: RMS=0.027 (target=0.015) step 035: RMS=0.023 (target=0.015) step 040: RMS=0.020 (target=0.015) step 045: RMS=0.018 (target=0.015) step 050: RMS=0.017 (target=0.015) step 055: RMS=0.015 (target=0.015) inflation complete. inflation took 0.3 minutes mris_curvature -thresh .999 -n -a 5 -w -distances 10 10 ../surf/lh.inflated normalizing curvature values. averaging curvature patterns 5 times. sampling 10 neighbors out to a distance of 10 mm 130 vertices thresholded to be in k1 ~ [-1.22 0.35], k2 ~ [-0.15 0.15] total integrated curvature = 0.592*4pi (7.445) --> 0 handles ICI = 1.5, FI = 8.2, variation=144.425 99 vertices thresholded to be in [-0.05 0.03] writing Gaussian curvature to ../surf/lh.inflated.K...thresholding curvature at 99.90% level curvature mean = 0.000, std = 0.002 94 vertices thresholded to be in [-0.42 0.17] done. writing mean curvature to ../surf/lh.inflated.H...curvature mean = -0.018, std = 0.024 done. #----------------------------------------- #@# Curvature Stats lh Fri Apr 5 20:09:20 CEST 2013 /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf mris_curvature_stats -m --writeCurvatureFiles -G -o ../stats/lh.curv.stats -F smoothwm ACC019 lh curv sulc Toggling save flag on curvature files [ ok ] Outputting results using filestem [ ../stats/lh.curv.stats ] Toggling save flag on curvature files [ ok ] Setting surface [ ACC019/lh.smoothwm ] Reading surface... [ ok ] Setting texture [ curv ] Reading texture... [ ok ] Setting texture [ sulc ] Reading texture...Gb_filter = 0 [ ok ] Calculating Discrete Principal Curvatures... Determining geometric order for vertex faces... [####################] [ ok ] Determining KH curvatures... [####################] [ ok ] Determining k1k2 curvatures... [####################] [ ok ] deltaViolations [ 209 ] Gb_filter = 0 WARN: S lookup min: -0.563906 WARN: S explicit min: 0.000000 vertex = 609 #-------------------------------------------- #@# Sphere lh Fri Apr 5 20:09:22 CEST 2013 /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/scripts mris_sphere -seed 1234 ../surf/lh.inflated ../surf/lh.sphere setting seed for random number genererator to 1234 $Id: mris_sphere.c,v 1.57 2011/03/02 00:04:34 nicks Exp $ $Id: mrisurf.c,v 1.693.2.4 2012/11/07 22:38:00 nicks Exp $ reading original vertex positions... unfolding cortex into spherical form... surface projected - minimizing metric distortion... scaling brain by 0.329... MRISunfold() max_passes = 1 ------- tol=5.0e-01, sigma=0.0, host=linux, nav=1024, nbrs=2, l_area=1.000, l_dist=1.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 1.000000 desired_rms_height -1.000000 momentum 0.900000 nbhd_size 7 max_nbrs 8 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 0 randomSeed 1234 -------------------- mrisRemoveNegativeArea() pass 1: epoch 1 of 3 starting distance error %19.60 pass 1: epoch 2 of 3 starting distance error %19.60 unfolding complete - removing small folds... starting distance error %19.51 removing remaining folds... final distance error %19.53 MRISunfold() return, current seed 1234 writing spherical brain to ../surf/lh.sphere spherical transformation took 0.47 hours #-------------------------------------------- #@# Surf Reg lh Fri Apr 5 20:37:49 CEST 2013 /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/scripts mris_register -curv ../surf/lh.sphere /usr/local/freesurfer/average/lh.average.curvature.filled.buckner40.tif ../surf/lh.sphere.reg using smoothwm curvature for final alignment $Id: mris_register.c,v 1.59 2011/03/02 00:04:33 nicks Exp $ $Id: mrisurf.c,v 1.693.2.4 2012/11/07 22:38:00 nicks Exp $ reading surface from ../surf/lh.sphere... reading template parameterization from /usr/local/freesurfer/average/lh.average.curvature.filled.buckner40.tif... MRISregister() ------- max_passes = 4 min_degrees = 0.500000 max_degrees = 64.000000 nangles = 8 tol=5.0e-01, sigma=0.0, host=linux, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height -1.000000 momentum 0.950000 nbhd_size -10 max_nbrs 10 niterations 25 nsurfaces 0 SURFACES 3 flags 16 (10) use curv 16 no sulc 0 no rigid align 0 mris->nsize 1 mris->hemisphere 0 randomSeed 0 tol=5.0e-01, sigma=0.0, host=linux, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization -------------------- 1 Reading lh.sulc curvature mean = -0.000, std = 0.562 curvature mean = 0.032, std = 0.932 curvature mean = 0.025, std = 0.874 Starting MRISrigidBodyAlignGlobal() d=64.00 min @ (0.00, -16.00, -16.00) sse = 260774.9, tmin=0.7956 d=32.00 min @ (8.00, 8.00, 8.00) sse = 208504.7, tmin=1.6480 d=16.00 min @ (-4.00, -4.00, 0.00) sse = 180661.5, tmin=2.4818 d=8.00 min @ (0.00, 0.00, -2.00) sse = 179217.9, tmin=3.3602 d=4.00 min @ (0.00, 0.00, 1.00) sse = 178562.7, tmin=4.2435 d=2.00 min @ (0.50, 0.50, -0.50) sse = 178052.9, tmin=5.1238 d=0.50 min @ (-0.12, 0.00, 0.12) sse = 178032.1, tmin=6.7360 tol=1.0e+00, sigma=0.5, host=linux, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=0.050, l_spring=0.500, l_dist=5.000 using quadratic fit line minimization MRISrigidBodyAlignGlobal() done 6.74 min curvature mean = -0.004, std = 0.966 curvature mean = 0.009, std = 0.949 curvature mean = -0.007, std = 0.979 curvature mean = 0.003, std = 0.978 curvature mean = -0.007, std = 0.983 curvature mean = 0.000, std = 0.991 2 Reading smoothwm curvature mean = -0.035, std = 0.293 curvature mean = 0.002, std = 0.068 curvature mean = 0.051, std = 0.381 curvature mean = 0.002, std = 0.081 curvature mean = 0.018, std = 0.576 curvature mean = 0.002, std = 0.088 curvature mean = 0.009, std = 0.707 curvature mean = 0.002, std = 0.091 curvature mean = 0.002, std = 0.801 MRISregister() return, current seed 0 writing registered surface to ../surf/lh.sphere.reg... expanding nbhd size to 1 #-------------------------------------------- #@# Jacobian white lh Fri Apr 5 20:55:16 CEST 2013 mris_jacobian ../surf/lh.white ../surf/lh.sphere.reg ../surf/lh.jacobian_white reading surface from ../surf/lh.white... writing curvature file ../surf/lh.jacobian_white #-------------------------------------------- #@# AvgCurv lh Fri Apr 5 20:55:18 CEST 2013 /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/scripts mrisp_paint -a 5 /usr/local/freesurfer/average/lh.average.curvature.filled.buckner40.tif#6 ../surf/lh.sphere.reg ../surf/lh.avg_curv averaging curvature patterns 5 times... reading surface from ../surf/lh.sphere.reg... reading template parameterization from /usr/local/freesurfer/average/lh.average.curvature.filled.buckner40.tif... writing curvature file to ../surf/lh.avg_curv... #----------------------------------------- #@# Cortical Parc lh Fri Apr 5 20:55:20 CEST 2013 /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/scripts mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.mgz -seed 1234 ACC019 lh ../surf/lh.sphere.reg /usr/local/freesurfer/average/lh.curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs ../label/lh.aparc.annot setting seed for random number generator to 1234 using ../mri/aseg.mgz aseg volume to correct midline $Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $ $Id: mrisurf.c,v 1.693.2.4 2012/11/07 22:38:00 nicks Exp $ reading atlas from /usr/local/freesurfer/average/lh.curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs... reading color table from GCSA file.... average std = 1.0 using min determinant for regularization = 0.011 0 singular and 384 ill-conditioned covariance matrices regularized input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature labeling surface... 1060 labels changed using aseg relabeling using gibbs priors... 000: 2712 changed, 115897 examined... 001: 583 changed, 11504 examined... 002: 137 changed, 3344 examined... 003: 43 changed, 817 examined... 004: 11 changed, 278 examined... 005: 7 changed, 72 examined... 006: 5 changed, 39 examined... 007: 1 changed, 16 examined... 008: 1 changed, 6 examined... 009: 2 changed, 8 examined... 010: 3 changed, 11 examined... 011: 0 changed, 11 examined... 200 labels changed using aseg 000: 118 total segments, 74 labels (292 vertices) changed 001: 46 total segments, 6 labels (14 vertices) changed 002: 39 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 35 changed) rationalizing unknown annotations with cortex label relabeling unknown label... relabeling corpuscallosum label... 1567 vertices marked for relabeling... 1567 labels changed in reclassification. writing output to ../label/lh.aparc.annot... classification took 0 minutes and 47 seconds. #-------------------------------------------- #@# Make Pial Surf lh Fri Apr 5 20:56:07 CEST 2013 /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/scripts mris_make_surfaces -aseg aseg -white NOWRITE -mgz -T1 brain.finalsurfs ACC019 lh -white NOWRITE indicates that white, curv, area, and cortex.label files will not be written... using aseg volume aseg to prevent surfaces crossing the midline INFO: assuming MGZ format for volumes. using brain.finalsurfs as T1 volume... $Id: mris_make_surfaces.c,v 1.127.2.3 2012/11/07 19:57:28 nicks Exp $ $Id: mrisurf.c,v 1.693.2.4 2012/11/07 22:38:00 nicks Exp $ reading volume /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/filled.mgz... reading volume /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/brain.finalsurfs.mgz... reading volume /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/wm.mgz... 9062 bright wm thresholded. 54 bright non-wm voxels segmented. reading original surface position from /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.orig... computing class statistics... border white: 226967 voxels (1.35%) border gray 238004 voxels (1.42%) WM (95.0): 96.0 +- 7.0 [70.0 --> 110.0] GM (85.0) : 82.4 +- 11.7 [30.0 --> 110.0] setting MIN_GRAY_AT_WHITE_BORDER to 61.3 (was 70) setting MAX_BORDER_WHITE to 109.0 (was 105) setting MIN_BORDER_WHITE to 73.0 (was 85) setting MAX_CSF to 37.8 (was 40) setting MAX_GRAY to 95.0 (was 95) setting MAX_GRAY_AT_CSF_BORDER to 67.1 (was 75) setting MIN_GRAY_AT_CSF_BORDER to 37.8 (was 40) smoothing contralateral hemisphere... intensity peaks found at WM=102, GM=73 using class modes intead of means.... mean inside = 95.0, mean outside = 79.3 smoothing surface for 5 iterations... reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) repositioning cortical surface to gray/white boundary reading volume /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/aseg.mgz... smoothing T1 volume with sigma = 2.000 vertex spacing 0.82 +- 0.21 (0.02-->4.02) (max @ vno 75192 --> 115618) face area 0.28 +- 0.12 (0.00-->3.31) mean absolute distance = 1.33 +- 1.51 4281 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... inhibiting deformation at non-cortical midline structures... removing 3 vertex label from ripped group deleting segment 1 with 3 points - only 0.00% unknown deleting segment 2 with 348 points - only 0.00% unknown deleting segment 3 with 105 points - only 0.00% unknown deleting segment 4 with 10 points - only 0.00% unknown mean border=88.7, 103 (103) missing vertices, mean dist -0.5 [1.7 (%51.2)->0.8 (%48.8))] %35 local maxima, %53 large gradients and % 7 min vals, 0 gradients ignored tol=1.0e-04, sigma=2.0, host=linux, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 0 randomSeed 0 smoothing T1 volume with sigma = 1.000 vertex spacing 0.87 +- 0.24 (0.10-->4.37) (max @ vno 75192 --> 115618) face area 0.28 +- 0.13 (0.00-->3.13) mean absolute distance = 0.74 +- 1.04 4448 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=3588104.5, rms=8.35 001: dt: 0.5000, sse=4383576.5, rms=5.326 (0.000%) 002: dt: 0.5000, sse=4581960.5, rms=3.527 (0.000%) 003: dt: 0.5000, sse=4799642.0, rms=2.787 (0.000%) 004: dt: 0.5000, sse=4940352.5, rms=2.556 (0.000%) 005: dt: 0.5000, sse=4986242.5, rms=2.490 (0.000%) rms = 2.47, time step reduction 1 of 3 to 0.250... 006: dt: 0.5000, sse=5017637.5, rms=2.466 (0.000%) 007: dt: 0.2500, sse=3022864.5, rms=1.628 (0.000%) 008: dt: 0.2500, sse=2776013.2, rms=1.465 (0.000%) rms = 1.43, time step reduction 2 of 3 to 0.125... 009: dt: 0.2500, sse=2698551.0, rms=1.432 (0.000%) rms = 1.41, time step reduction 3 of 3 to 0.062... 010: dt: 0.1250, sse=2665910.5, rms=1.409 (0.000%) positioning took 0.9 minutes inhibiting deformation at non-cortical midline structures... removing 3 vertex label from ripped group deleting segment 0 with 3 points - only 0.00% unknown deleting segment 2 with 7 points - only 0.00% unknown deleting segment 3 with 418 points - only 0.00% unknown removing 3 vertex label from ripped group deleting segment 4 with 3 points - only 0.00% unknown deleting segment 5 with 75 points - only 0.00% unknown deleting segment 6 with 12 points - only 41.67% unknown deleting segment 7 with 24 points - only 0.00% unknown deleting segment 8 with 132 points - only 9.09% unknown deleting segment 9 with 5 points - only 0.00% unknown mean border=89.0, 92 (52) missing vertices, mean dist -0.2 [1.1 (%44.9)->0.4 (%55.1))] %54 local maxima, %39 large gradients and % 2 min vals, 0 gradients ignored tol=1.0e-04, sigma=1.0, host=linux, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 vertex spacing 0.86 +- 0.24 (0.08-->4.60) (max @ vno 86725 --> 86751) face area 0.31 +- 0.15 (0.00-->3.50) mean absolute distance = 0.50 +- 0.76 4475 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=3072160.2, rms=4.23 011: dt: 0.5000, sse=3453666.8, rms=2.719 (0.000%) 012: dt: 0.5000, sse=3882623.5, rms=2.255 (0.000%) rms = 2.21, time step reduction 1 of 3 to 0.250... 013: dt: 0.5000, sse=4114549.8, rms=2.205 (0.000%) 014: dt: 0.2500, sse=3039801.8, rms=1.459 (0.000%) 015: dt: 0.2500, sse=2879566.8, rms=1.314 (0.000%) rms = 1.29, time step reduction 2 of 3 to 0.125... 016: dt: 0.2500, sse=2808925.8, rms=1.285 (0.000%) rms = 1.26, time step reduction 3 of 3 to 0.062... 017: dt: 0.1250, sse=2785477.8, rms=1.265 (0.000%) positioning took 0.6 minutes inhibiting deformation at non-cortical midline structures... removing 4 vertex label from ripped group deleting segment 0 with 4 points - only 0.00% unknown deleting segment 2 with 7 points - only 0.00% unknown deleting segment 3 with 378 points - only 0.00% unknown removing 1 vertex label from ripped group deleting segment 4 with 1 points - only 0.00% unknown deleting segment 5 with 91 points - only 0.00% unknown deleting segment 6 with 9 points - only 22.22% unknown deleting segment 7 with 21 points - only 0.00% unknown deleting segment 8 with 102 points - only 11.76% unknown mean border=90.5, 70 (25) missing vertices, mean dist -0.2 [0.6 (%57.1)->0.3 (%42.9))] %71 local maxima, %23 large gradients and % 1 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.5, host=linux, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 vertex spacing 0.86 +- 0.24 (0.10-->5.00) (max @ vno 86725 --> 86751) face area 0.31 +- 0.15 (0.00-->3.48) mean absolute distance = 0.38 +- 0.60 3486 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=2971732.2, rms=3.23 018: dt: 0.5000, sse=3274002.0, rms=1.990 (0.000%) 019: dt: 0.5000, sse=3611894.8, rms=1.882 (0.000%) rms = 1.94, time step reduction 1 of 3 to 0.250... 020: dt: 0.2500, sse=3189123.2, rms=1.442 (0.000%) 021: dt: 0.2500, sse=3037544.0, rms=1.218 (0.000%) rms = 1.19, time step reduction 2 of 3 to 0.125... 022: dt: 0.2500, sse=2971677.2, rms=1.188 (0.000%) rms = 1.17, time step reduction 3 of 3 to 0.062... 023: dt: 0.1250, sse=2942541.8, rms=1.173 (0.000%) positioning took 0.6 minutes inhibiting deformation at non-cortical midline structures... removing 3 vertex label from ripped group deleting segment 0 with 3 points - only 0.00% unknown deleting segment 2 with 8 points - only 0.00% unknown deleting segment 3 with 394 points - only 0.00% unknown removing 1 vertex label from ripped group deleting segment 4 with 1 points - only 0.00% unknown deleting segment 5 with 118 points - only 0.00% unknown deleting segment 6 with 74 points - only 16.22% unknown deleting segment 7 with 125 points - only 9.60% unknown mean border=91.0, 108 (23) missing vertices, mean dist -0.1 [0.5 (%52.0)->0.3 (%48.0))] %79 local maxima, %15 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.2, host=linux, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 repositioning cortical surface to gray/csf boundary. smoothing T1 volume with sigma = 2.000 averaging target values for 5 iterations... 000: dt: 0.0000, sse=2995904.2, rms=2.00 024: dt: 0.5000, sse=3715861.2, rms=1.364 (0.000%) rms = 1.63, time step reduction 1 of 3 to 0.250... 025: dt: 0.2500, sse=3444520.8, rms=1.087 (0.000%) 026: dt: 0.2500, sse=3336562.8, rms=1.013 (0.000%) rms = 0.99, time step reduction 2 of 3 to 0.125... 027: dt: 0.2500, sse=3360291.2, rms=0.987 (0.000%) rms = 0.98, time step reduction 3 of 3 to 0.062... 028: dt: 0.1250, sse=3358289.0, rms=0.983 (0.000%) positioning took 0.5 minutes inhibiting deformation at non-cortical midline structures... removing 1 vertex label from ripped group deleting segment 1 with 1 points - only 0.00% unknown removing 1 vertex label from ripped group deleting segment 2 with 1 points - only 0.00% unknown smoothing surface for 5 iterations... mean border=57.6, 86 (86) missing vertices, mean dist 1.3 [2.9 (%0.0)->2.5 (%100.0))] %24 local maxima, %26 large gradients and %45 min vals, 5238 gradients ignored tol=1.0e-04, sigma=2.0, host=linux, nav=16, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 1.000 averaging target values for 5 iterations... 000: dt: 0.0000, sse=27050350.0, rms=33.72 001: dt: 0.5000, sse=22225238.0, rms=30.316 (0.000%) 002: dt: 0.5000, sse=18174310.0, rms=27.154 (0.000%) 003: dt: 0.5000, sse=14799678.0, rms=24.225 (0.000%) 004: dt: 0.5000, sse=12055940.0, rms=21.501 (0.000%) 005: dt: 0.5000, sse=9982814.0, rms=19.025 (0.000%) 006: dt: 0.5000, sse=8507596.0, rms=16.828 (0.000%) 007: dt: 0.5000, sse=7514199.0, rms=14.860 (0.000%) 008: dt: 0.5000, sse=6818141.0, rms=13.069 (0.000%) 009: dt: 0.5000, sse=6307253.0, rms=11.407 (0.000%) 010: dt: 0.5000, sse=5910768.0, rms=9.850 (0.000%) 011: dt: 0.5000, sse=5643465.5, rms=8.415 (0.000%) 012: dt: 0.5000, sse=5483956.5, rms=7.189 (0.000%) 013: dt: 0.5000, sse=5444668.0, rms=6.220 (0.000%) 014: dt: 0.5000, sse=5421351.5, rms=5.533 (0.000%) 015: dt: 0.5000, sse=5484780.5, rms=5.077 (0.000%) 016: dt: 0.5000, sse=5487479.0, rms=4.810 (0.000%) 017: dt: 0.5000, sse=5565425.5, rms=4.648 (0.000%) 018: dt: 0.5000, sse=5525699.5, rms=4.552 (0.000%) 019: dt: 0.5000, sse=5562978.0, rms=4.486 (0.000%) 020: dt: 0.5000, sse=5528784.0, rms=4.427 (0.000%) rms = 4.39, time step reduction 1 of 3 to 0.250... 021: dt: 0.5000, sse=5563719.0, rms=4.389 (0.000%) 022: dt: 0.2500, sse=3445465.5, rms=3.334 (0.000%) 023: dt: 0.2500, sse=3215302.8, rms=3.022 (0.000%) 024: dt: 0.2500, sse=3073572.8, rms=2.948 (0.000%) rms = 2.91, time step reduction 2 of 3 to 0.125... 025: dt: 0.2500, sse=3040782.2, rms=2.912 (0.000%) 026: dt: 0.1250, sse=2828037.2, rms=2.763 (0.000%) rms = 2.75, time step reduction 3 of 3 to 0.062... 027: dt: 0.1250, sse=2805246.8, rms=2.746 (0.000%) positioning took 2.4 minutes mean border=53.1, 1129 (5) missing vertices, mean dist 0.1 [0.2 (%29.7)->0.4 (%70.3))] %42 local maxima, %14 large gradients and %38 min vals, 4232 gradients ignored tol=1.0e-04, sigma=1.0, host=linux, nav=8, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 averaging target values for 5 iterations... 000: dt: 0.0000, sse=4110554.5, rms=7.67 028: dt: 0.5000, sse=4037437.2, rms=5.328 (0.000%) 029: dt: 0.5000, sse=5053246.0, rms=4.933 (0.000%) 030: dt: 0.5000, sse=4936552.5, rms=4.694 (0.000%) rms = 4.71, time step reduction 1 of 3 to 0.250... 031: dt: 0.2500, sse=3909410.8, rms=3.676 (0.000%) 032: dt: 0.2500, sse=3641822.0, rms=3.223 (0.000%) 033: dt: 0.2500, sse=3513348.0, rms=3.074 (0.000%) 034: dt: 0.2500, sse=3481149.5, rms=3.019 (0.000%) rms = 2.98, time step reduction 2 of 3 to 0.125... 035: dt: 0.2500, sse=3460914.0, rms=2.976 (0.000%) 036: dt: 0.1250, sse=3214911.8, rms=2.732 (0.000%) rms = 2.69, time step reduction 3 of 3 to 0.062... 037: dt: 0.1250, sse=3188960.0, rms=2.691 (0.000%) positioning took 1.0 minutes mean border=51.6, 1810 (4) missing vertices, mean dist 0.0 [0.2 (%39.6)->0.2 (%60.4))] %45 local maxima, %12 large gradients and %37 min vals, 3583 gradients ignored tol=1.0e-04, sigma=0.5, host=linux, nav=4, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 averaging target values for 5 iterations... 000: dt: 0.0000, sse=3303071.5, rms=3.45 rms = 4.21, time step reduction 1 of 3 to 0.250... 038: dt: 0.2500, sse=3191519.5, rms=3.000 (0.000%) 039: dt: 0.2500, sse=3303034.5, rms=2.898 (0.000%) 040: dt: 0.2500, sse=3348465.2, rms=2.842 (0.000%) rms = 2.82, time step reduction 2 of 3 to 0.125... 041: dt: 0.2500, sse=3407899.5, rms=2.822 (0.000%) 042: dt: 0.1250, sse=3253289.5, rms=2.707 (0.000%) rms = 2.68, time step reduction 3 of 3 to 0.062... 043: dt: 0.1250, sse=3247384.0, rms=2.679 (0.000%) positioning took 0.6 minutes mean border=51.0, 3747 (3) missing vertices, mean dist 0.0 [0.2 (%49.5)->0.2 (%50.5))] %44 local maxima, %12 large gradients and %36 min vals, 3064 gradients ignored tol=1.0e-04, sigma=0.2, host=linux, nav=2, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 writing pial surface to /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.pial... writing smoothed curvature to lh.curv.pial 000: dt: 0.0000, sse=3275984.5, rms=2.92 rms = 3.49, time step reduction 1 of 3 to 0.250... 044: dt: 0.2500, sse=3230065.2, rms=2.778 (0.000%) rms = 2.73, time step reduction 2 of 3 to 0.125... 045: dt: 0.2500, sse=3351999.0, rms=2.732 (0.000%) 046: dt: 0.1250, sse=3232249.0, rms=2.657 (0.000%) rms = 2.62, time step reduction 3 of 3 to 0.062... 047: dt: 0.1250, sse=3234863.8, rms=2.622 (0.000%) positioning took 0.4 minutes writing curvature file /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.curv.pial writing smoothed area to lh.area.pial writing curvature file /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.area.pial vertex spacing 0.96 +- 0.40 (0.06-->6.23) (max @ vno 80331 --> 80305) face area 0.37 +- 0.27 (0.00-->6.30) measuring cortical thickness... writing cortical thickness estimate to 'thickness' file. 0 of 115897 vertices processed 25000 of 115897 vertices processed 50000 of 115897 vertices processed 75000 of 115897 vertices processed 100000 of 115897 vertices processed 0 of 115897 vertices processed 25000 of 115897 vertices processed 50000 of 115897 vertices processed 75000 of 115897 vertices processed 100000 of 115897 vertices processed thickness calculation complete, 1018:1696 truncations. 22757 vertices at 0 distance 65999 vertices at 1 distance 68537 vertices at 2 distance 37271 vertices at 3 distance 16140 vertices at 4 distance 6132 vertices at 5 distance 2229 vertices at 6 distance 854 vertices at 7 distance 335 vertices at 8 distance 159 vertices at 9 distance 115 vertices at 10 distance 82 vertices at 11 distance 43 vertices at 12 distance 30 vertices at 13 distance 38 vertices at 14 distance 48 vertices at 15 distance 39 vertices at 16 distance 33 vertices at 17 distance 29 vertices at 18 distance 23 vertices at 19 distance 13 vertices at 20 distance writing curvature file /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.thickness positioning took 10.1 minutes #-------------------------------------------- #@# Surf Volume lh Fri Apr 5 21:06:11 CEST 2013 /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf mris_calc -o lh.area.mid lh.area add lh.area.pial Saving result to 'lh.area.mid' (type = MRI_CURV_FILE) [ ok ] mris_calc -o lh.area.mid lh.area.mid div 2 Saving result to 'lh.area.mid' (type = MRI_CURV_FILE) [ ok ] mris_calc -o lh.volume lh.area.mid mul lh.thickness Saving result to 'lh.volume' (type = MRI_CURV_FILE) [ ok ] #----------------------------------------- #@# WM/GM Contrast lh Fri Apr 5 21:06:11 CEST 2013 /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/scripts pctsurfcon --s ACC019 --lh-only Log file is /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/scripts/pctsurfcon.log Fri Apr 5 21:06:11 CEST 2013 setenv SUBJECTS_DIR /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer cd /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/scripts /usr/local/freesurfer/bin/pctsurfcon $Id: pctsurfcon,v 1.11.2.1 2011/11/10 20:37:10 nicks Exp $ Linux linux-To-be-filled-by-O-E-M 3.2.0-39-generic #62-Ubuntu SMP Thu Feb 28 00:28:53 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux FREESURFER_HOME /usr/local/freesurfer mri_vol2surf --mov /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/rawavg.mgz --hemi lh --noreshape --interp trilinear --projdist -1 --o /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/tmp.pctsurfcon.28549/lh.wm.mgh --regheader ACC019 --cortex srcvol = /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/rawavg.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = lh ProjDist = -1 reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Computing registration from header. Using /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/orig.mgz as target reference. Loading label /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/label/lh.cortex.label Reading surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface 1 -1 -1 -1 using old Done mapping volume to surface Number of source voxels hit = 64482 Masking with /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/label/lh.cortex.label Writing to /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/tmp.pctsurfcon.28549/lh.wm.mgh Dim: 115897 1 1 mri_vol2surf --mov /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/rawavg.mgz --hemi lh --noreshape --interp trilinear --o /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/tmp.pctsurfcon.28549/lh.gm.mgh --projfrac 0.3 --regheader ACC019 --cortex srcvol = /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/rawavg.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = lh ProjFrac = 0.3 thickness = thickness reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Computing registration from header. Using /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/orig.mgz as target reference. Loading label /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/label/lh.cortex.label Reading surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.white Done reading source surface Reading thickness /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.thickness Done Mapping Source Volume onto Source Subject Surface 1 0.3 0.3 0.3 using old Done mapping volume to surface Number of source voxels hit = 75638 Masking with /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/label/lh.cortex.label Writing to /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/tmp.pctsurfcon.28549/lh.gm.mgh Dim: 115897 1 1 mri_concat /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/tmp.pctsurfcon.28549/lh.wm.mgh /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/tmp.pctsurfcon.28549/lh.gm.mgh --paired-diff-norm --mul 100 --o /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.w-g.pct.mgh ninputs = 2 Checking inputs nframestot = 2 Allocing output Done allocing Combining pairs nframes = 1 Multiplying by 100.000000 Writing to /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.w-g.pct.mgh mri_segstats --in /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.w-g.pct.mgh --annot ACC019 lh aparc --sum /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/stats/lh.w-g.pct.stats --snr $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $ cwd cmdline mri_segstats --in /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.w-g.pct.mgh --annot ACC019 lh aparc --sum /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/stats/lh.w-g.pct.stats --snr sysname Linux hostname linux-To-be-filled-by-O-E-M machine x86_64 user linux UseRobust 0 Constructing seg from annotation Reading annotation reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Seg base 1000 Loading /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.w-g.pct.mgh Vertex Area is 0.617803 mm^3 Generating list of segmentation ids Found 36 segmentations Computing statistics for each segmentation 0 1000 unknown 0 0.000 1 1001 bankssts 1175 755.252 2 1002 caudalanteriorcingulate 908 573.775 3 1003 caudalmiddlefrontal 2503 1600.105 4 1004 corpuscallosum 0 0.000 5 1005 cuneus 2150 1257.123 6 1006 entorhinal 380 241.805 7 1007 fusiform 3306 2135.825 8 1008 inferiorparietal 5283 3218.145 9 1009 inferiortemporal 4398 2790.892 10 1010 isthmuscingulate 1471 853.326 11 1011 lateraloccipital 7320 4395.247 12 1012 lateralorbitofrontal 3674 2207.207 13 1013 lingual 3684 2337.569 14 1014 medialorbitofrontal 2544 1544.768 15 1015 middletemporal 3966 2513.687 16 1016 parahippocampal 1051 681.589 17 1017 paracentral 1560 924.183 18 1018 parsopercularis 2030 1238.723 19 1019 parsorbitalis 866 489.763 20 1020 parstriangularis 1737 1059.301 21 1021 pericalcarine 1697 1104.045 22 1022 postcentral 5747 3369.705 23 1023 posteriorcingulate 1511 944.442 24 1024 precentral 6746 3958.060 25 1025 precuneus 4719 3020.753 26 1026 rostralanteriorcingulate 1236 653.016 27 1027 rostralmiddlefrontal 7080 4431.848 28 1028 superiorfrontal 8022 5043.707 29 1029 superiorparietal 7969 4839.345 30 1030 superiortemporal 4615 2993.418 31 1031 supramarginal 4747 2970.437 32 1032 frontalpole 221 141.004 33 1033 temporalpole 583 378.349 34 1034 transversetemporal 721 364.152 35 1035 insula 3225 2048.526 Reporting on 34 segmentations mri_segstats done Cleaning up #----------------------------------------- #@# Parcellation Stats lh Fri Apr 5 21:06:19 CEST 2013 /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/scripts mris_anatomical_stats -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.stats -b -a ../label/lh.aparc.annot -c ../label/aparc.annot.ctab ACC019 lh white computing statistics for each annotation in ../label/lh.aparc.annot. reading volume /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/wm.mgz... reading input surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.white... reading input pial surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.pial... reading input white surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.white... INFO: assuming MGZ format for volumes. INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Saving annotation colortable ../label/aparc.annot.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name 1175 755 2266 3.037 0.448 0.120 0.034 13 1.5 bankssts 908 574 2052 3.482 0.595 0.160 0.049 25 1.7 caudalanteriorcingulate 2503 1600 4995 2.884 0.498 0.129 0.043 26 4.7 caudalmiddlefrontal 2150 1257 3261 2.226 0.668 0.151 0.061 35 5.5 cuneus 380 242 1556 4.234 0.781 0.151 0.056 6 1.0 entorhinal 3306 2136 8257 3.358 0.729 0.148 0.055 56 7.5 fusiform 5283 3218 9270 2.629 0.569 0.136 0.051 81 11.4 inferiorparietal 4398 2791 10219 3.059 0.792 0.153 0.076 91 14.1 inferiortemporal 1471 853 2801 2.988 0.960 0.136 0.048 22 2.9 isthmuscingulate 7320 4395 11643 2.437 0.705 0.148 0.057 118 18.0 lateraloccipital 3674 2207 6509 2.920 0.783 0.141 0.079 133 12.6 lateralorbitofrontal 3684 2338 5677 2.240 0.664 0.138 0.056 65 8.7 lingual 2544 1545 4549 2.756 0.971 0.144 0.297 226 6.7 medialorbitofrontal 3966 2514 9750 3.180 0.578 0.152 0.066 73 11.0 middletemporal 1051 682 1857 2.414 0.522 0.090 0.020 7 0.9 parahippocampal 1560 924 2466 2.461 0.598 0.101 0.033 12 1.9 paracentral 2030 1239 3733 2.783 0.507 0.128 0.048 30 4.1 parsopercularis 866 490 1965 3.134 0.542 0.143 0.052 13 2.0 parsorbitalis 1737 1059 3315 2.750 0.544 0.125 0.048 24 3.5 parstriangularis 1697 1104 1996 1.947 0.527 0.131 0.054 22 3.7 pericalcarine 5747 3370 8040 2.125 0.703 0.122 0.042 72 10.9 postcentral 1511 944 2942 2.820 0.869 0.140 0.045 23 2.8 posteriorcingulate 6746 3958 11957 2.775 0.584 0.121 0.056 135 12.4 precentral 4719 3021 8248 2.516 0.670 0.136 0.049 63 9.6 precuneus 1236 653 2708 3.408 0.918 0.146 0.088 29 4.3 rostralanteriorcingulate 7080 4432 13055 2.602 0.520 0.147 0.057 113 15.5 rostralmiddlefrontal 8022 5044 17406 2.974 0.585 0.144 0.380 905 22.9 superiorfrontal 7969 4839 11843 2.284 0.525 0.130 0.042 95 13.6 superiorparietal 4615 2993 9298 2.843 0.685 0.113 0.030 48 5.8 superiortemporal 4747 2970 8783 2.690 0.554 0.132 0.043 65 8.6 supramarginal 221 141 590 2.920 0.573 0.183 0.083 5 0.7 frontalpole 583 378 2286 3.829 0.565 0.132 0.049 8 1.1 temporalpole 721 364 993 2.466 0.444 0.104 0.035 7 0.8 transversetemporal 3225 2049 6604 3.339 0.907 0.135 0.092 73 10.5 insula #----------------------------------------- #@# Cortical Parc 2 lh Fri Apr 5 21:06:32 CEST 2013 /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/scripts mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.mgz -seed 1234 ACC019 lh ../surf/lh.sphere.reg /usr/local/freesurfer/average/lh.destrieux.simple.2009-07-29.gcs ../label/lh.aparc.a2009s.annot setting seed for random number generator to 1234 using ../mri/aseg.mgz aseg volume to correct midline $Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $ $Id: mrisurf.c,v 1.693.2.4 2012/11/07 22:38:00 nicks Exp $ reading atlas from /usr/local/freesurfer/average/lh.destrieux.simple.2009-07-29.gcs... reading color table from GCSA file.... average std = 3.9 0.2 using min determinant for regularization = 0.000 0 singular and 1066 ill-conditioned covariance matrices regularized input 1: CURVATURE FILE, flags 0, avgs 0, name sulc input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature labeling surface... 62 labels changed using aseg relabeling using gibbs priors... 000: 8107 changed, 115897 examined... 001: 1961 changed, 30973 examined... 002: 656 changed, 9975 examined... 003: 261 changed, 3602 examined... 004: 120 changed, 1518 examined... 005: 48 changed, 653 examined... 006: 27 changed, 288 examined... 007: 18 changed, 165 examined... 008: 10 changed, 102 examined... 009: 6 changed, 49 examined... 010: 5 changed, 42 examined... 011: 5 changed, 25 examined... 012: 0 changed, 25 examined... 12 labels changed using aseg 000: 249 total segments, 167 labels (1927 vertices) changed 001: 94 total segments, 13 labels (39 vertices) changed 002: 81 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 104 changed) rationalizing unknown annotations with cortex label relabeling Medial_wall label... 1054 vertices marked for relabeling... 1054 labels changed in reclassification. writing output to ../label/lh.aparc.a2009s.annot... classification took 0 minutes and 53 seconds. #----------------------------------------- #@# Parcellation Stats 2 lh Fri Apr 5 21:07:25 CEST 2013 /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/scripts mris_anatomical_stats -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.a2009s.stats -b -a ../label/lh.aparc.a2009s.annot -c ../label/aparc.annot.a2009s.ctab ACC019 lh white computing statistics for each annotation in ../label/lh.aparc.a2009s.annot. reading volume /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/wm.mgz... reading input surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.white... reading input pial surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.pial... reading input white surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.white... INFO: assuming MGZ format for volumes. INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. reading colortable from annotation file... colortable with 76 entries read (originally /autofs/space/birn_044/users/christophe_atlas_rebuild//scripts_2008/Simple_surface_labels2009.txt) Saving annotation colortable ../label/aparc.annot.a2009s.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name 1075 690 1800 2.443 0.512 0.154 0.080 22 2.7 G_and_S_frontomargin 1299 785 2936 3.110 0.639 0.151 0.061 23 3.3 G_and_S_occipital_inf 1160 630 1653 2.171 0.669 0.118 0.042 18 2.1 G_and_S_paracentral 1326 810 2572 2.755 0.621 0.142 0.058 21 3.6 G_and_S_subcentral 738 460 1578 2.649 0.517 0.163 0.057 16 1.8 G_and_S_transv_frontopol 2173 1273 4314 3.283 0.725 0.132 0.065 35 5.7 G_and_S_cingul-Ant 1060 716 2372 3.142 0.529 0.141 0.045 19 1.8 G_and_S_cingul-Mid-Ant 1066 700 2148 2.881 0.666 0.123 0.038 11 1.7 G_and_S_cingul-Mid-Post 399 246 1254 3.623 0.659 0.160 0.053 7 0.8 G_cingul-Post-dorsal 289 152 433 2.672 0.936 0.134 0.049 5 0.5 G_cingul-Post-ventral 1928 1116 3033 2.200 0.742 0.151 0.060 32 4.9 G_cuneus 1257 710 2817 2.954 0.415 0.143 0.059 25 3.3 G_front_inf-Opercular 202 106 546 3.577 0.439 0.167 0.092 4 0.8 G_front_inf-Orbital 1155 639 2439 2.807 0.551 0.137 0.062 20 3.0 G_front_inf-Triangul 3837 2347 8807 2.869 0.520 0.156 0.067 70 10.2 G_front_middle 5425 3277 13105 3.082 0.590 0.151 0.070 99 16.7 G_front_sup 480 265 1005 3.210 0.780 0.131 0.078 12 1.5 G_Ins_lg_and_S_cent_ins 617 349 1773 3.549 0.937 0.170 0.129 25 3.6 G_insular_short 2117 1201 4552 2.916 0.596 0.166 0.095 57 9.9 G_occipital_middle 2265 1291 2875 2.035 0.460 0.148 0.052 35 5.1 G_occipital_sup 1322 809 3718 3.397 0.675 0.153 0.067 28 3.5 G_oc-temp_lat-fusifor 2401 1416 3935 2.291 0.715 0.151 0.073 53 7.5 G_oc-temp_med-Lingual 1073 699 2879 3.133 1.078 0.136 0.050 16 2.2 G_oc-temp_med-Parahip 2422 1334 4718 2.765 0.744 0.149 0.097 125 10.1 G_orbital 1962 1117 4022 2.719 0.528 0.148 0.058 37 4.4 G_pariet_inf-Angular 2560 1525 5402 2.852 0.569 0.139 0.051 42 5.5 G_pariet_inf-Supramar 2800 1716 4825 2.306 0.540 0.137 0.046 39 5.3 G_parietal_sup 2290 1167 3176 2.144 0.548 0.122 0.046 34 4.7 G_postcentral 2753 1364 5531 3.019 0.511 0.125 0.083 92 6.1 G_precentral 2089 1287 4707 2.757 0.686 0.163 0.072 43 6.2 G_precuneus 998 577 2198 2.792 0.675 0.156 0.065 21 2.7 G_rectus 528 317 706 2.387 1.149 0.192 1.263 198 2.9 G_subcallosal 552 268 868 2.547 0.412 0.100 0.036 5 0.6 G_temp_sup-G_T_transv 1760 1090 4602 3.164 0.524 0.135 0.039 25 2.8 G_temp_sup-Lateral 514 338 1159 3.220 0.867 0.092 0.029 3 0.5 G_temp_sup-Plan_polar 815 532 1677 2.760 0.443 0.114 0.031 7 1.1 G_temp_sup-Plan_tempo 2346 1453 6200 3.015 0.865 0.164 0.093 63 9.4 G_temporal_inf 2672 1642 7419 3.255 0.624 0.169 0.090 63 9.8 G_temporal_middle 315 213 491 2.577 0.474 0.111 0.021 2 0.3 Lat_Fis-ant-Horizont 278 187 397 2.486 0.462 0.104 0.036 2 0.4 Lat_Fis-ant-Vertical 1140 752 1634 2.613 0.610 0.109 0.026 8 1.2 Lat_Fis-post 2224 1298 2776 1.946 0.461 0.147 0.060 39 5.1 Pole_occipital 1408 881 5137 3.913 0.703 0.148 0.058 25 3.6 Pole_temporal 2489 1735 3255 2.101 0.595 0.129 0.040 28 4.5 S_calcarine 2709 1832 3313 2.006 0.749 0.112 0.029 18 3.4 S_central 842 561 1328 2.565 0.572 0.102 0.027 6 1.0 S_cingul-Marginalis 484 323 881 3.347 0.491 0.116 0.106 5 1.0 S_circular_insula_ant 1347 926 2146 2.690 1.020 0.085 0.023 7 1.1 S_circular_insula_inf 1508 1034 2512 3.221 0.611 0.129 0.077 27 4.2 S_circular_insula_sup 685 459 1412 3.442 0.616 0.128 0.048 6 1.2 S_collat_transv_ant 271 178 341 2.296 0.334 0.125 0.031 2 0.4 S_collat_transv_post 2051 1312 3114 2.565 0.507 0.122 0.033 19 3.0 S_front_inf 1152 763 1608 2.313 0.426 0.121 0.032 10 1.5 S_front_middle 1787 1179 2907 2.622 0.462 0.129 1.476 799 4.8 S_front_sup 360 250 465 2.416 0.470 0.115 0.020 2 0.3 S_interm_prim-Jensen 2829 1766 3700 2.281 0.470 0.109 0.029 24 3.2 S_intrapariet_and_P_trans 936 626 1264 2.375 0.465 0.130 0.035 8 1.3 S_oc_middle_and_Lunatus 1145 719 1628 2.298 0.505 0.130 0.035 12 1.7 S_oc_sup_and_transversal 924 595 1265 2.634 0.568 0.131 0.039 9 1.5 S_occipital_ant 893 592 1645 2.920 0.574 0.147 0.049 13 1.8 S_oc-temp_lat 1811 1256 2856 2.569 0.665 0.113 0.027 15 2.0 S_oc-temp_med_and_Lingual 287 185 478 2.718 0.320 0.152 0.053 4 0.7 S_orbital_lateral 709 462 958 2.345 0.816 0.125 0.042 8 1.3 S_orbital_med-olfact 1237 800 2448 3.314 0.595 0.132 0.048 13 2.4 S_orbital-H_Shaped 2122 1319 2811 2.318 0.546 0.116 0.037 19 3.1 S_parieto_occipital 1310 737 1606 2.823 1.153 0.144 0.045 26 2.4 S_pericallosal 2450 1599 3300 2.232 0.465 0.121 0.032 22 3.2 S_postcentral 1515 1001 2493 2.774 0.438 0.120 0.033 14 2.1 S_precentral-inf-part 874 598 1293 2.513 0.384 0.105 0.027 4 1.0 S_precentral-sup-part 495 300 915 3.233 1.122 0.133 0.050 7 1.0 S_suborbital 910 583 1442 2.631 0.631 0.122 0.031 8 1.3 S_subparietal 1295 841 2126 2.967 0.560 0.134 0.039 15 2.3 S_temporal_inf 4091 2656 6892 2.892 0.554 0.117 0.031 36 5.1 S_temporal_sup 237 147 295 2.549 0.481 0.125 0.032 9 0.3 S_temporal_transverse #----------------------------------------- #@# Cortical Parc 3 lh Fri Apr 5 21:07:40 CEST 2013 /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/scripts mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.mgz -seed 1234 ACC019 lh ../surf/lh.sphere.reg /usr/local/freesurfer/average/lh.DKTatlas40.gcs ../label/lh.aparc.DKTatlas40.annot setting seed for random number generator to 1234 using ../mri/aseg.mgz aseg volume to correct midline $Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $ $Id: mrisurf.c,v 1.693.2.4 2012/11/07 22:38:00 nicks Exp $ reading atlas from /usr/local/freesurfer/average/lh.DKTatlas40.gcs... reading color table from GCSA file.... average std = 0.9 using min determinant for regularization = 0.007 0 singular and 293 ill-conditioned covariance matrices regularized input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature labeling surface... 1010 labels changed using aseg relabeling using gibbs priors... 000: 2355 changed, 115897 examined... 001: 515 changed, 10199 examined... 002: 124 changed, 2852 examined... 003: 36 changed, 708 examined... 004: 15 changed, 223 examined... 005: 8 changed, 91 examined... 006: 5 changed, 46 examined... 007: 6 changed, 32 examined... 008: 5 changed, 26 examined... 009: 4 changed, 25 examined... 010: 4 changed, 25 examined... 011: 3 changed, 25 examined... 012: 1 changed, 21 examined... 013: 2 changed, 7 examined... 014: 1 changed, 8 examined... 015: 1 changed, 7 examined... 016: 1 changed, 7 examined... 017: 0 changed, 7 examined... 165 labels changed using aseg 000: 54 total segments, 21 labels (144 vertices) changed 001: 33 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 39 changed) rationalizing unknown annotations with cortex label relabeling unknown label... relabeling corpuscallosum label... 885 vertices marked for relabeling... 885 labels changed in reclassification. writing output to ../label/lh.aparc.DKTatlas40.annot... classification took 0 minutes and 44 seconds. #----------------------------------------- #@# Parcellation Stats 3 lh Fri Apr 5 21:08:24 CEST 2013 /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/scripts mris_anatomical_stats -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.DKTatlas40.stats -b -a ../label/lh.aparc.DKTatlas40.annot -c ../label/aparc.annot.DKTatlas40.ctab ACC019 lh white computing statistics for each annotation in ../label/lh.aparc.DKTatlas40.annot. reading volume /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/wm.mgz... reading input surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.white... reading input pial surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.pial... reading input white surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.white... INFO: assuming MGZ format for volumes. INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. reading colortable from annotation file... colortable with 36 entries read (originally /Applications/freesurfer/average/colortable_desikan_killiany.txt) Saving annotation colortable ../label/aparc.annot.DKTatlas40.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name 1415 910 2988 3.330 0.580 0.146 0.046 29 2.5 caudalanteriorcingulate 2682 1701 5381 2.892 0.490 0.128 0.043 28 5.0 caudalmiddlefrontal 3138 1852 4638 2.218 0.657 0.143 0.055 45 7.2 cuneus 355 227 1451 4.237 0.801 0.155 0.057 5 0.9 entorhinal 2988 1954 6905 3.234 0.646 0.147 0.054 48 6.3 fusiform 5164 3129 8974 2.609 0.567 0.136 0.051 80 11.4 inferiorparietal 4558 2860 11364 3.155 0.867 0.154 0.077 97 15.1 inferiortemporal 1484 864 2844 2.990 0.967 0.134 0.048 22 2.9 isthmuscingulate 7485 4486 11830 2.412 0.698 0.149 0.057 122 18.5 lateraloccipital 4067 2488 7272 2.782 0.838 0.149 0.232 270 13.8 lateralorbitofrontal 3701 2357 5709 2.244 0.664 0.140 0.057 65 8.9 lingual 2068 1242 3806 2.710 0.886 0.143 0.062 42 5.4 medialorbitofrontal 5121 3254 11676 3.128 0.575 0.145 0.059 84 12.4 middletemporal 1038 672 1843 2.415 0.530 0.090 0.020 7 0.9 parahippocampal 1719 1026 2839 2.525 0.613 0.101 0.032 13 2.1 paracentral 1837 1116 3412 2.873 0.507 0.132 0.051 29 3.9 parsopercularis 890 543 1846 3.095 0.517 0.131 0.047 10 1.8 parsorbitalis 2228 1352 4012 2.649 0.542 0.122 0.045 28 4.3 parstriangularis 1668 1084 1967 1.956 0.527 0.131 0.054 22 3.6 pericalcarine 6399 3811 9028 2.155 0.709 0.123 0.043 79 12.0 postcentral 1623 1020 3104 2.811 0.846 0.141 0.045 24 3.0 posteriorcingulate 6644 3900 11711 2.780 0.590 0.121 0.057 135 12.4 precentral 4624 2927 8119 2.516 0.667 0.137 0.050 64 9.6 precuneus 1514 835 3240 3.474 0.920 0.149 0.083 33 4.8 rostralanteriorcingulate 4738 2899 8747 2.684 0.543 0.150 0.068 133 12.2 rostralmiddlefrontal 9359 5883 20115 2.874 0.612 0.145 0.333 932 25.7 superiorfrontal 6163 3760 9377 2.310 0.512 0.128 0.040 72 10.1 superiorparietal 6228 4018 13696 3.004 0.727 0.120 0.036 74 9.0 superiortemporal 4558 2867 8297 2.670 0.568 0.131 0.041 60 8.0 supramarginal 721 364 993 2.470 0.443 0.105 0.036 7 0.8 transversetemporal 2668 1680 5703 3.403 0.788 0.128 0.082 61 8.5 insula #-------------------------------------------- #@# Tessellate rh Fri Apr 5 21:08:39 CEST 2013 /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/scripts mri_pretess ../mri/filled.mgz 127 ../mri/norm.mgz ../mri/filled-pretess127.mgz Iteration Number : 1 pass 1 (xy+): 4 found - 4 modified | TOTAL: 4 pass 2 (xy+): 0 found - 4 modified | TOTAL: 4 pass 1 (xy-): 1 found - 1 modified | TOTAL: 5 pass 2 (xy-): 0 found - 1 modified | TOTAL: 5 pass 1 (yz+): 4 found - 4 modified | TOTAL: 9 pass 2 (yz+): 0 found - 4 modified | TOTAL: 9 pass 1 (yz-): 0 found - 0 modified | TOTAL: 9 pass 1 (xz+): 1 found - 1 modified | TOTAL: 10 pass 2 (xz+): 0 found - 1 modified | TOTAL: 10 pass 1 (xz-): 2 found - 2 modified | TOTAL: 12 pass 2 (xz-): 0 found - 2 modified | TOTAL: 12 Iteration Number : 1 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 1 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 1 found - 1 modified | TOTAL: 1 pass 2 (+-): 0 found - 1 modified | TOTAL: 1 pass 1 (--): 0 found - 0 modified | TOTAL: 1 pass 1 (-+): 1 found - 1 modified | TOTAL: 2 pass 2 (-+): 0 found - 1 modified | TOTAL: 2 Iteration Number : 2 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 0 found - 0 modified | TOTAL: 0 pass 1 (yz-): 1 found - 1 modified | TOTAL: 1 pass 2 (yz-): 0 found - 1 modified | TOTAL: 1 pass 1 (xz+): 0 found - 0 modified | TOTAL: 1 pass 1 (xz-): 0 found - 0 modified | TOTAL: 1 Iteration Number : 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 2 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Iteration Number : 3 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 0 found - 0 modified | TOTAL: 0 pass 1 (yz-): 0 found - 0 modified | TOTAL: 0 pass 1 (xz+): 0 found - 0 modified | TOTAL: 0 pass 1 (xz-): 0 found - 0 modified | TOTAL: 0 Iteration Number : 3 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 3 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Total Number of Modified Voxels = 15 (out of 239897: 0.006253) Ambiguous edge configurations... mri_pretess done mri_tessellate ../mri/filled-pretess127.mgz 127 ../surf/rh.orig.nofix $Id: mri_tessellate.c,v 1.36 2011/03/02 00:04:25 nicks Exp $ $Id: mrisurf.c,v 1.693.2.4 2012/11/07 22:38:00 nicks Exp $ slice 40: 663 vertices, 740 faces slice 50: 5917 vertices, 6188 faces slice 60: 15460 vertices, 15871 faces slice 70: 27571 vertices, 27993 faces slice 80: 38716 vertices, 39128 faces slice 90: 49070 vertices, 49442 faces slice 100: 59103 vertices, 59446 faces slice 110: 68613 vertices, 68979 faces slice 120: 77814 vertices, 78197 faces slice 130: 86938 vertices, 87286 faces slice 140: 95095 vertices, 95421 faces slice 150: 102387 vertices, 102708 faces slice 160: 109289 vertices, 109544 faces slice 170: 114532 vertices, 114739 faces slice 180: 118282 vertices, 118431 faces slice 190: 119162 vertices, 119220 faces slice 200: 119162 vertices, 119220 faces slice 210: 119162 vertices, 119220 faces slice 220: 119162 vertices, 119220 faces slice 230: 119162 vertices, 119220 faces slice 240: 119162 vertices, 119220 faces slice 250: 119162 vertices, 119220 faces using the conformed surface RAS to save vertex points... writing ../surf/rh.orig.nofix using vox2ras matrix: -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; rm -f ../mri/filled-pretess127.mgz mris_extract_main_component ../surf/rh.orig.nofix ../surf/rh.orig.nofix counting number of connected components... 119162 voxel in cpt #1: X=-58 [v=119162,e=357660,f=238440] located at (22.455397, -25.359821, 32.539066) For the whole surface: X=-58 [v=119162,e=357660,f=238440] One single component has been found nothing to do done #-------------------------------------------- #@# Smooth1 rh Fri Apr 5 21:08:48 CEST 2013 mris_smooth -nw -seed 1234 ../surf/rh.orig.nofix ../surf/rh.smoothwm.nofix /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/scripts setting seed for random number generator to 1234 smoothing surface tessellation for 10 iterations... smoothing complete - recomputing first and second fundamental forms... #-------------------------------------------- #@# Inflation1 rh Fri Apr 5 21:08:52 CEST 2013 mris_inflate -no-save-sulc ../surf/rh.smoothwm.nofix ../surf/rh.inflated.nofix /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/scripts avg radius = 44.9 mm, total surface area = 62836 mm^2 writing inflated surface to ../surf/rh.inflated.nofix inflation took 0.5 minutes Not saving sulc step 000: RMS=0.103 (target=0.015) step 005: RMS=0.077 (target=0.015) step 010: RMS=0.059 (target=0.015) step 015: RMS=0.050 (target=0.015) step 020: RMS=0.046 (target=0.015) step 025: RMS=0.041 (target=0.015) step 030: RMS=0.037 (target=0.015) step 035: RMS=0.036 (target=0.015) step 040: RMS=0.034 (target=0.015) step 045: RMS=0.033 (target=0.015) step 050: RMS=0.034 (target=0.015) step 055: RMS=0.033 (target=0.015) step 060: RMS=0.033 (target=0.015) inflation complete. Not saving sulc #-------------------------------------------- #@# QSphere rh Fri Apr 5 21:09:24 CEST 2013 /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/scripts mris_sphere -q -seed 1234 ../surf/rh.inflated.nofix ../surf/rh.qsphere.nofix doing quick spherical unfolding. setting seed for random number genererator to 1234 $Id: mris_sphere.c,v 1.57 2011/03/02 00:04:34 nicks Exp $ $Id: mrisurf.c,v 1.693.2.4 2012/11/07 22:38:00 nicks Exp $ reading original vertex positions... unfolding cortex into spherical form... surface projected - minimizing metric distortion... vertex spacing 1.06 +- 0.60 (0.00-->6.46) (max @ vno 90983 --> 91800) face area 0.03 +- 0.04 (-0.14-->0.62) scaling brain by 0.347... inflating to sphere (rms error < 2.00) 000: dt: 0.0000, rms radial error=175.470, avgs=0 005/300: dt: 0.9000, rms radial error=175.212, avgs=0 010/300: dt: 0.9000, rms radial error=174.661, avgs=0 015/300: dt: 0.9000, rms radial error=173.936, avgs=0 020/300: dt: 0.9000, rms radial error=173.109, avgs=0 025/300: dt: 0.9000, rms radial error=172.225, avgs=0 030/300: dt: 0.9000, rms radial error=171.307, avgs=0 035/300: dt: 0.9000, rms radial error=170.371, avgs=0 040/300: dt: 0.9000, rms radial error=169.427, avgs=0 045/300: dt: 0.9000, rms radial error=168.480, avgs=0 050/300: dt: 0.9000, rms radial error=167.533, avgs=0 055/300: dt: 0.9000, rms radial error=166.587, avgs=0 060/300: dt: 0.9000, rms radial error=165.643, avgs=0 065/300: dt: 0.9000, rms radial error=164.702, avgs=0 070/300: dt: 0.9000, rms radial error=163.766, avgs=0 075/300: dt: 0.9000, rms radial error=162.837, avgs=0 080/300: dt: 0.9000, rms radial error=161.916, avgs=0 085/300: dt: 0.9000, rms radial error=161.000, avgs=0 090/300: dt: 0.9000, rms radial error=160.089, avgs=0 095/300: dt: 0.9000, rms radial error=159.183, avgs=0 100/300: dt: 0.9000, rms radial error=158.281, avgs=0 105/300: dt: 0.9000, rms radial error=157.386, avgs=0 110/300: dt: 0.9000, rms radial error=156.495, avgs=0 115/300: dt: 0.9000, rms radial error=155.610, avgs=0 120/300: dt: 0.9000, rms radial error=154.729, avgs=0 125/300: dt: 0.9000, rms radial error=153.854, avgs=0 130/300: dt: 0.9000, rms radial error=152.983, avgs=0 135/300: dt: 0.9000, rms radial error=152.118, avgs=0 140/300: dt: 0.9000, rms radial error=151.257, avgs=0 145/300: dt: 0.9000, rms radial error=150.401, avgs=0 150/300: dt: 0.9000, rms radial error=149.549, avgs=0 155/300: dt: 0.9000, rms radial error=148.703, avgs=0 160/300: dt: 0.9000, rms radial error=147.861, avgs=0 165/300: dt: 0.9000, rms radial error=147.024, avgs=0 170/300: dt: 0.9000, rms radial error=146.192, avgs=0 175/300: dt: 0.9000, rms radial error=145.364, avgs=0 180/300: dt: 0.9000, rms radial error=144.542, avgs=0 185/300: dt: 0.9000, rms radial error=143.724, avgs=0 190/300: dt: 0.9000, rms radial error=142.910, avgs=0 195/300: dt: 0.9000, rms radial error=142.101, avgs=0 200/300: dt: 0.9000, rms radial error=141.297, avgs=0 205/300: dt: 0.9000, rms radial error=140.498, avgs=0 210/300: dt: 0.9000, rms radial error=139.704, avgs=0 215/300: dt: 0.9000, rms radial error=138.914, avgs=0 220/300: dt: 0.9000, rms radial error=138.129, avgs=0 225/300: dt: 0.9000, rms radial error=137.349, avgs=0 230/300: dt: 0.9000, rms radial error=136.573, avgs=0 235/300: dt: 0.9000, rms radial error=135.802, avgs=0 240/300: dt: 0.9000, rms radial error=135.035, avgs=0 245/300: dt: 0.9000, rms radial error=134.272, avgs=0 250/300: dt: 0.9000, rms radial error=133.514, avgs=0 255/300: dt: 0.9000, rms radial error=132.759, avgs=0 260/300: dt: 0.9000, rms radial error=132.009, avgs=0 265/300: dt: 0.9000, rms radial error=131.264, avgs=0 270/300: dt: 0.9000, rms radial error=130.523, avgs=0 275/300: dt: 0.9000, rms radial error=129.786, avgs=0 280/300: dt: 0.9000, rms radial error=129.053, avgs=0 285/300: dt: 0.9000, rms radial error=128.325, avgs=0 290/300: dt: 0.9000, rms radial error=127.600, avgs=0 295/300: dt: 0.9000, rms radial error=126.880, avgs=0 300/300: dt: 0.9000, rms radial error=126.163, avgs=0 spherical inflation complete. epoch 1 (K=10.0), pass 1, starting sse = 13384.67 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.00/10 = 0.00014 epoch 2 (K=40.0), pass 1, starting sse = 2074.52 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.00/10 = 0.00013 epoch 3 (K=160.0), pass 1, starting sse = 203.46 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.06/10 = 0.00642 epoch 4 (K=640.0), pass 1, starting sse = 16.91 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.11/13 = 0.00842 final writing spherical brain to ../surf/rh.qsphere.nofix spherical transformation took 0.07 hours distance error %100000.00 #-------------------------------------------- #@# Fix Topology rh Fri Apr 5 21:13:20 CEST 2013 cp ../surf/rh.orig.nofix ../surf/rh.orig cp ../surf/rh.inflated.nofix ../surf/rh.inflated /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/scripts mris_fix_topology -mgz -sphere qsphere.nofix -ga -seed 1234 ACC019 rh reading spherical homeomorphism from 'qsphere.nofix' using genetic algorithm with optimized parameters setting seed for random number genererator to 1234 ************************************************************* Topology Correction Parameters retessellation mode: genetic search number of patches/generation : 10 number of generations : 10 surface mri loglikelihood coefficient : 1.0 volume mri loglikelihood coefficient : 10.0 normal dot loglikelihood coefficient : 1.0 quadratic curvature loglikelihood coefficient : 1.0 volume resolution : 2 eliminate vertices during search : 1 initial patch selection : 1 select all defect vertices : 0 ordering dependant retessellation: 0 use precomputed edge table : 0 smooth retessellated patch : 2 match retessellated patch : 1 verbose mode : 0 ************************************************************* INFO: assuming .mgz format $Id: mris_fix_topology.c,v 1.48 2011/03/02 00:04:32 nicks Exp $ $Id: mrisurf.c,v 1.693.2.4 2012/11/07 22:38:00 nicks Exp $ before topology correction, eno=-58 (nv=119162, nf=238440, ne=357660, g=30) using quasi-homeomorphic spherical map to tessellate cortical surface... Correction of the Topology Finding true center and radius of Spherical Surface...done Surface centered at (0,0,0) with radius 100.0 in 7 iterations marking ambiguous vertices... 7239 ambiguous faces found in tessellation segmenting defects... 29 defects found, arbitrating ambiguous regions... analyzing neighboring defects... 29 defects to be corrected 0 vertices coincident reading input surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.qsphere.nofix... reading brain volume from brain... reading wm segmentation from wm... Computing Initial Surface Statistics -face loglikelihood: -9.2060 (-4.6030) -vertex loglikelihood: -6.0605 (-3.0302) -normal dot loglikelihood: -3.6641 (-3.6641) -quad curv loglikelihood: -6.4261 (-3.2131) Total Loglikelihood : -25.3568 CORRECTING DEFECT 0 (vertices=1736, convex hull=460) After retessellation of defect 0, euler #=-24 (115208,344725,229493) : difference with theory (-26) = -2 CORRECTING DEFECT 1 (vertices=18, convex hull=52) After retessellation of defect 1, euler #=-23 (115217,344773,229533) : difference with theory (-25) = -2 CORRECTING DEFECT 2 (vertices=112, convex hull=136) After retessellation of defect 2, euler #=-22 (115259,344958,229677) : difference with theory (-24) = -2 CORRECTING DEFECT 3 (vertices=40, convex hull=86) After retessellation of defect 3, euler #=-21 (115289,345082,229772) : difference with theory (-23) = -2 CORRECTING DEFECT 4 (vertices=16, convex hull=15) After retessellation of defect 4, euler #=-20 (115290,345090,229780) : difference with theory (-22) = -2 CORRECTING DEFECT 5 (vertices=38, convex hull=26) After retessellation of defect 5, euler #=-19 (115293,345108,229796) : difference with theory (-21) = -2 CORRECTING DEFECT 6 (vertices=46, convex hull=88) After retessellation of defect 6, euler #=-18 (115318,345220,229884) : difference with theory (-20) = -2 CORRECTING DEFECT 7 (vertices=11, convex hull=15) After retessellation of defect 7, euler #=-17 (115320,345228,229891) : difference with theory (-19) = -2 CORRECTING DEFECT 8 (vertices=24, convex hull=62) After retessellation of defect 8, euler #=-16 (115332,345285,229937) : difference with theory (-18) = -2 CORRECTING DEFECT 9 (vertices=106, convex hull=40) After retessellation of defect 9, euler #=-15 (115340,345324,229969) : difference with theory (-17) = -2 CORRECTING DEFECT 10 (vertices=13, convex hull=21) After retessellation of defect 10, euler #=-14 (115342,345337,229981) : difference with theory (-16) = -2 CORRECTING DEFECT 11 (vertices=60, convex hull=31) After retessellation of defect 11, euler #=-13 (115348,345366,230005) : difference with theory (-15) = -2 CORRECTING DEFECT 12 (vertices=34, convex hull=68) After retessellation of defect 12, euler #=-12 (115364,345443,230067) : difference with theory (-14) = -2 CORRECTING DEFECT 13 (vertices=51, convex hull=84) After retessellation of defect 13, euler #=-11 (115391,345557,230155) : difference with theory (-13) = -2 CORRECTING DEFECT 14 (vertices=18, convex hull=23) After retessellation of defect 14, euler #=-10 (115393,345571,230168) : difference with theory (-12) = -2 CORRECTING DEFECT 15 (vertices=76, convex hull=33) After retessellation of defect 15, euler #=-9 (115402,345607,230196) : difference with theory (-11) = -2 CORRECTING DEFECT 16 (vertices=5, convex hull=16) After retessellation of defect 16, euler #=-8 (115404,345616,230204) : difference with theory (-10) = -2 CORRECTING DEFECT 17 (vertices=40, convex hull=28) After retessellation of defect 17, euler #=-7 (115406,345631,230218) : difference with theory (-9) = -2 CORRECTING DEFECT 18 (vertices=6, convex hull=22) After retessellation of defect 18, euler #=-6 (115407,345641,230228) : difference with theory (-8) = -2 CORRECTING DEFECT 19 (vertices=66, convex hull=30) After retessellation of defect 19, euler #=-5 (115416,345677,230256) : difference with theory (-7) = -2 CORRECTING DEFECT 20 (vertices=611, convex hull=391) After retessellation of defect 20, euler #=-5 (115538,346246,230703) : difference with theory (-6) = -1 CORRECTING DEFECT 21 (vertices=78, convex hull=106) After retessellation of defect 21, euler #=-4 (115568,346383,230811) : difference with theory (-5) = -1 CORRECTING DEFECT 22 (vertices=10, convex hull=25) After retessellation of defect 22, euler #=-3 (115568,346393,230822) : difference with theory (-4) = -1 CORRECTING DEFECT 23 (vertices=81, convex hull=85) After retessellation of defect 23, euler #=-2 (115603,346534,230929) : difference with theory (-3) = -1 CORRECTING DEFECT 24 (vertices=162, convex hull=126) After retessellation of defect 24, euler #=-1 (115620,346643,231022) : difference with theory (-2) = -1 CORRECTING DEFECT 25 (vertices=73, convex hull=81) After retessellation of defect 25, euler #=-1 (115636,346729,231092) : difference with theory (-1) = 0 CORRECTING DEFECT 26 (vertices=616, convex hull=335) After retessellation of defect 26, euler #=0 (115843,347514,231671) : difference with theory (0) = 0 CORRECTING DEFECT 27 (vertices=7, convex hull=16) After retessellation of defect 27, euler #=1 (115845,347524,231680) : difference with theory (1) = 0 CORRECTING DEFECT 28 (vertices=18, convex hull=18) After retessellation of defect 28, euler #=2 (115847,347535,231690) : difference with theory (2) = 0 computing original vertex metric properties... storing new metric properties... computing tessellation statistics... vertex spacing 0.89 +- 0.22 (0.06-->8.63) (max @ vno 85021 --> 90415) face area 0.00 +- 0.00 (0.00-->0.00) performing soap bubble on retessellated vertices for 0 iterations... vertex spacing 0.89 +- 0.22 (0.06-->8.63) (max @ vno 85021 --> 90415) face area 0.00 +- 0.00 (0.00-->0.00) tessellation finished, orienting corrected surface... 93 mutations (33.6%), 184 crossovers (66.4%), 358 vertices were eliminated building final representation... 3315 vertices and 0 faces have been removed from triangulation after topology correction, eno=2 (nv=115847, nf=231690, ne=347535, g=0) writing corrected surface to /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.orig... 0.000 % of the vertices (0 vertices) exhibit an orientation change topology fixing took 25.0 minutes 0 defective edges removing intersecting faces 000: 219 intersecting 001: 6 intersecting 002: 2 intersecting mris_euler_number ../surf/rh.orig euler # = v-e+f = 2g-2: 115847 - 347535 + 231690 = 2 --> 0 holes F =2V-4: 231690 = 231694-4 (0) 2E=3F: 695070 = 695070 (0) total defect index = 0 /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/scripts mris_remove_intersection ../surf/rh.orig ../surf/rh.orig intersection removal took 0.00 hours removing intersecting faces 000: 41 intersecting 001: 16 intersecting 002: 2 intersecting writing corrected surface to ../surf/rh.orig rm ../surf/rh.inflated #-------------------------------------------- #@# Make White Surf rh Fri Apr 5 21:38:24 CEST 2013 /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/scripts mris_make_surfaces -noaparc -whiteonly -mgz -T1 brain.finalsurfs ACC019 rh only generating white matter surface not using aparc to prevent surfaces crossing the midline INFO: assuming MGZ format for volumes. using brain.finalsurfs as T1 volume... $Id: mris_make_surfaces.c,v 1.127.2.3 2012/11/07 19:57:28 nicks Exp $ $Id: mrisurf.c,v 1.693.2.4 2012/11/07 22:38:00 nicks Exp $ reading volume /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/filled.mgz... reading volume /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/brain.finalsurfs.mgz... reading volume /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/wm.mgz... 10333 bright wm thresholded. 54 bright non-wm voxels segmented. reading original surface position from /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.orig... computing class statistics... border white: 226967 voxels (1.35%) border gray 238004 voxels (1.42%) WM (95.0): 96.0 +- 7.1 [70.0 --> 110.0] GM (85.0) : 82.5 +- 11.4 [30.0 --> 110.0] setting MIN_GRAY_AT_WHITE_BORDER to 64.6 (was 70) setting MAX_BORDER_WHITE to 110.1 (was 105) setting MIN_BORDER_WHITE to 76.0 (was 85) setting MAX_CSF to 41.7 (was 40) setting MAX_GRAY to 95.9 (was 95) setting MAX_GRAY_AT_CSF_BORDER to 70.3 (was 75) setting MIN_GRAY_AT_CSF_BORDER to 41.7 (was 40) repositioning cortical surface to gray/white boundary reading volume /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/aseg.mgz... smoothing T1 volume with sigma = 2.000 vertex spacing 0.82 +- 0.22 (0.03-->4.89) (max @ vno 77723 --> 115485) face area 0.28 +- 0.12 (0.00-->2.91) mean absolute distance = 1.89 +- 1.88 4009 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... smoothing contralateral hemisphere... intensity peaks found at WM=103, GM=76 using class modes intead of means.... mean inside = 95.1, mean outside = 79.8 smoothing surface for 5 iterations... inhibiting deformation at non-cortical midline structures... removing 2 vertex label from ripped group removing 3 vertex label from ripped group removing 2 vertex label from ripped group mean border=93.7, 134 (134) missing vertices, mean dist -0.9 [2.4 (%59.0)->0.8 (%41.0))] %25 local maxima, %55 large gradients and %15 min vals, 0 gradients ignored tol=1.0e-04, sigma=2.0, host=linux, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 1 randomSeed 0 smoothing T1 volume with sigma = 1.000 vertex spacing 0.88 +- 0.27 (0.03-->5.77) (max @ vno 77723 --> 115485) face area 0.28 +- 0.14 (0.00-->3.98) mean absolute distance = 0.93 +- 1.08 3347 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=4834747.5, rms=11.23 001: dt: 0.5000, sse=4709043.0, rms=7.856 (0.000%) 002: dt: 0.5000, sse=4484837.5, rms=5.239 (0.000%) 003: dt: 0.5000, sse=4663917.0, rms=3.611 (0.000%) 004: dt: 0.5000, sse=4861287.0, rms=2.892 (0.000%) 005: dt: 0.5000, sse=4941065.5, rms=2.621 (0.000%) 006: dt: 0.5000, sse=5027342.5, rms=2.512 (0.000%) 007: dt: 0.5000, sse=5035388.5, rms=2.453 (0.000%) rms = 2.42, time step reduction 1 of 3 to 0.250... 008: dt: 0.5000, sse=5091933.0, rms=2.425 (0.000%) 009: dt: 0.2500, sse=3151261.5, rms=1.729 (0.000%) 010: dt: 0.2500, sse=2941295.2, rms=1.605 (0.000%) rms = 1.58, time step reduction 2 of 3 to 0.125... 011: dt: 0.2500, sse=2859395.5, rms=1.583 (0.000%) rms = 1.57, time step reduction 3 of 3 to 0.062... 012: dt: 0.1250, sse=2822712.0, rms=1.566 (0.000%) positioning took 1.1 minutes inhibiting deformation at non-cortical midline structures... removing 3 vertex label from ripped group removing 3 vertex label from ripped group removing 2 vertex label from ripped group removing 2 vertex label from ripped group removing 1 vertex label from ripped group removing 1 vertex label from ripped group mean border=91.5, 170 (68) missing vertices, mean dist -0.1 [1.5 (%33.2)->0.6 (%66.8))] %51 local maxima, %39 large gradients and % 4 min vals, 0 gradients ignored tol=1.0e-04, sigma=1.0, host=linux, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 vertex spacing 0.86 +- 0.25 (0.06-->4.43) (max @ vno 115194 --> 115197) face area 0.32 +- 0.16 (0.00-->4.23) mean absolute distance = 0.55 +- 0.84 4526 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=3387310.2, rms=5.13 013: dt: 0.5000, sse=3656799.5, rms=3.114 (0.000%) 014: dt: 0.5000, sse=4040774.0, rms=2.347 (0.000%) 015: dt: 0.5000, sse=4287712.5, rms=2.222 (0.000%) rms = 2.22, time step reduction 1 of 3 to 0.250... 016: dt: 0.5000, sse=4507095.5, rms=2.218 (0.000%) 017: dt: 0.2500, sse=3172191.5, rms=1.473 (0.000%) 018: dt: 0.2500, sse=3002399.0, rms=1.358 (0.000%) rms = 1.34, time step reduction 2 of 3 to 0.125... 019: dt: 0.2500, sse=2935380.2, rms=1.342 (0.000%) rms = 1.33, time step reduction 3 of 3 to 0.062... 020: dt: 0.1250, sse=2908252.2, rms=1.328 (0.000%) positioning took 0.6 minutes inhibiting deformation at non-cortical midline structures... removing 1 vertex label from ripped group removing 3 vertex label from ripped group removing 3 vertex label from ripped group removing 3 vertex label from ripped group removing 4 vertex label from ripped group removing 3 vertex label from ripped group removing 3 vertex label from ripped group mean border=92.2, 170 (57) missing vertices, mean dist -0.2 [0.8 (%47.7)->0.3 (%52.3))] %71 local maxima, %22 large gradients and % 2 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.5, host=linux, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 vertex spacing 0.86 +- 0.25 (0.09-->4.74) (max @ vno 115194 --> 115197) face area 0.31 +- 0.16 (0.00-->4.14) mean absolute distance = 0.41 +- 0.67 4463 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=3044617.8, rms=2.94 021: dt: 0.5000, sse=3391358.2, rms=1.938 (0.000%) 022: dt: 0.5000, sse=3701046.2, rms=1.838 (0.000%) rms = 1.97, time step reduction 1 of 3 to 0.250... 023: dt: 0.2500, sse=3258577.2, rms=1.442 (0.000%) 024: dt: 0.2500, sse=3099258.0, rms=1.273 (0.000%) rms = 1.25, time step reduction 2 of 3 to 0.125... 025: dt: 0.2500, sse=3048106.2, rms=1.249 (0.000%) rms = 1.24, time step reduction 3 of 3 to 0.062... 026: dt: 0.1250, sse=3022019.2, rms=1.236 (0.000%) positioning took 0.5 minutes inhibiting deformation at non-cortical midline structures... removing 1 vertex label from ripped group removing 3 vertex label from ripped group removing 4 vertex label from ripped group removing 3 vertex label from ripped group mean border=92.6, 184 (53) missing vertices, mean dist -0.1 [0.5 (%47.6)->0.3 (%52.4))] %79 local maxima, %15 large gradients and % 1 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.2, host=linux, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 writing white matter surface to /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.white... writing smoothed curvature to rh.curv 000: dt: 0.0000, sse=3069227.2, rms=1.98 027: dt: 0.5000, sse=3822068.0, rms=1.392 (0.000%) rms = 1.60, time step reduction 1 of 3 to 0.250... 028: dt: 0.2500, sse=3550906.5, rms=1.133 (0.000%) 029: dt: 0.2500, sse=3439971.0, rms=1.056 (0.000%) rms = 1.04, time step reduction 2 of 3 to 0.125... 030: dt: 0.2500, sse=3452862.2, rms=1.036 (0.000%) rms = 1.03, time step reduction 3 of 3 to 0.062... 031: dt: 0.1250, sse=3447874.0, rms=1.032 (0.000%) positioning took 0.4 minutes inhibiting deformation at non-cortical midline structures... removing 3 vertex label from ripped group generating cortex label... 14 non-cortical segments detected only using segment with 1473 vertices erasing segment 1 (vno[0] = 68633) erasing segment 2 (vno[0] = 71399) erasing segment 3 (vno[0] = 73341) erasing segment 4 (vno[0] = 77538) erasing segment 5 (vno[0] = 77560) erasing segment 6 (vno[0] = 81397) erasing segment 7 (vno[0] = 83451) erasing segment 8 (vno[0] = 84983) erasing segment 9 (vno[0] = 88968) erasing segment 10 (vno[0] = 90417) erasing segment 11 (vno[0] = 90436) erasing segment 12 (vno[0] = 92725) erasing segment 13 (vno[0] = 93459) writing cortex label to /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/label/rh.cortex.label... LabelWrite: saving to /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/label/rh.cortex.label writing curvature file /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.curv writing smoothed area to rh.area writing curvature file /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.area vertex spacing 0.86 +- 0.25 (0.03-->5.54) (max @ vno 115487 --> 115481) face area 0.31 +- 0.15 (0.00-->4.39) refinement took 4.1 minutes #-------------------------------------------- #@# Smooth2 rh Fri Apr 5 21:42:30 CEST 2013 mris_smooth -n 3 -nw -seed 1234 ../surf/rh.white ../surf/rh.smoothwm /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/scripts smoothing for 3 iterations setting seed for random number generator to 1234 smoothing surface tessellation for 3 iterations... smoothing complete - recomputing first and second fundamental forms... #-------------------------------------------- #@# Inflation2 rh Fri Apr 5 21:42:33 CEST 2013 /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/scripts mris_inflate ../surf/rh.smoothwm ../surf/rh.inflated avg radius = 44.8 mm, total surface area = 65714 mm^2 writing inflated surface to ../surf/rh.inflated writing sulcal depths to ../surf/rh.sulc step 000: RMS=0.110 (target=0.015) step 005: RMS=0.077 (target=0.015) step 010: RMS=0.057 (target=0.015) step 015: RMS=0.046 (target=0.015) step 020: RMS=0.039 (target=0.015) step 025: RMS=0.032 (target=0.015) step 030: RMS=0.027 (target=0.015) step 035: RMS=0.023 (target=0.015) step 040: RMS=0.020 (target=0.015) step 045: RMS=0.018 (target=0.015) step 050: RMS=0.017 (target=0.015) step 055: RMS=0.015 (target=0.015) inflation complete. inflation took 0.4 minutes mris_curvature -thresh .999 -n -a 5 -w -distances 10 10 ../surf/rh.inflated normalizing curvature values. averaging curvature patterns 5 times. sampling 10 neighbors out to a distance of 10 mm 137 vertices thresholded to be in k1 ~ [-0.23 1.50], k2 ~ [-0.11 0.07] total integrated curvature = 0.563*4pi (7.079) --> 0 handles ICI = 1.4, FI = 8.2, variation=143.735 79 vertices thresholded to be in [-0.03 0.02] writing Gaussian curvature to ../surf/rh.inflated.K...thresholding curvature at 99.90% level curvature mean = 0.000, std = 0.001 98 vertices thresholded to be in [-0.14 0.42] done. writing mean curvature to ../surf/rh.inflated.H...curvature mean = -0.018, std = 0.023 done. #----------------------------------------- #@# Curvature Stats rh Fri Apr 5 21:44:03 CEST 2013 /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf mris_curvature_stats -m --writeCurvatureFiles -G -o ../stats/rh.curv.stats -F smoothwm ACC019 rh curv sulc Toggling save flag on curvature files [ ok ] Outputting results using filestem [ ../stats/rh.curv.stats ] Toggling save flag on curvature files [ ok ] Setting surface [ ACC019/rh.smoothwm ] Reading surface... [ ok ] Setting texture [ curv ] Reading texture... [ ok ] Setting texture [ sulc ] Reading texture...Gb_filter = 0 [ ok ] Calculating Discrete Principal Curvatures... Determining geometric order for vertex faces... [####################] [ ok ] Determining KH curvatures... [####################] [ ok ] Determining k1k2 curvatures... [####################] [ ok ] deltaViolations [ 205 ] Gb_filter = 0 WARN: S lookup min: -0.561585 WARN: S explicit min: 0.000000 vertex = 499 #-------------------------------------------- #@# Sphere rh Fri Apr 5 21:44:06 CEST 2013 /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/scripts mris_sphere -seed 1234 ../surf/rh.inflated ../surf/rh.sphere setting seed for random number genererator to 1234 $Id: mris_sphere.c,v 1.57 2011/03/02 00:04:34 nicks Exp $ $Id: mrisurf.c,v 1.693.2.4 2012/11/07 22:38:00 nicks Exp $ reading original vertex positions... unfolding cortex into spherical form... surface projected - minimizing metric distortion... scaling brain by 0.335... MRISunfold() max_passes = 1 ------- tol=5.0e-01, sigma=0.0, host=linux, nav=1024, nbrs=2, l_area=1.000, l_dist=1.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 1.000000 desired_rms_height -1.000000 momentum 0.900000 nbhd_size 7 max_nbrs 8 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 1 randomSeed 1234 -------------------- mrisRemoveNegativeArea() pass 1: epoch 1 of 3 starting distance error %19.72 pass 1: epoch 2 of 3 starting distance error %19.70 unfolding complete - removing small folds... starting distance error %19.61 removing remaining folds... final distance error %19.63 MRISunfold() return, current seed 1234 writing spherical brain to ../surf/rh.sphere spherical transformation took 0.53 hours #-------------------------------------------- #@# Surf Reg rh Fri Apr 5 22:15:43 CEST 2013 /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/scripts mris_register -curv ../surf/rh.sphere /usr/local/freesurfer/average/rh.average.curvature.filled.buckner40.tif ../surf/rh.sphere.reg using smoothwm curvature for final alignment $Id: mris_register.c,v 1.59 2011/03/02 00:04:33 nicks Exp $ $Id: mrisurf.c,v 1.693.2.4 2012/11/07 22:38:00 nicks Exp $ reading surface from ../surf/rh.sphere... reading template parameterization from /usr/local/freesurfer/average/rh.average.curvature.filled.buckner40.tif... MRISregister() ------- max_passes = 4 min_degrees = 0.500000 max_degrees = 64.000000 nangles = 8 tol=5.0e-01, sigma=0.0, host=linux, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height -1.000000 momentum 0.950000 nbhd_size -10 max_nbrs 10 niterations 25 nsurfaces 0 SURFACES 3 flags 16 (10) use curv 16 no sulc 0 no rigid align 0 mris->nsize 1 mris->hemisphere 1 randomSeed 0 tol=5.0e-01, sigma=0.0, host=linux, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization -------------------- 1 Reading rh.sulc curvature mean = 0.000, std = 0.566 curvature mean = 0.024, std = 0.946 curvature mean = 0.024, std = 0.872 Starting MRISrigidBodyAlignGlobal() d=64.00 min @ (0.00, -16.00, 0.00) sse = 237953.6, tmin=0.7674 d=16.00 min @ (0.00, 4.00, -4.00) sse = 182295.3, tmin=2.2931 d=8.00 min @ (2.00, 0.00, 0.00) sse = 176644.6, tmin=3.1054 d=1.00 min @ (-0.25, -0.25, -0.25) sse = 176448.9, tmin=5.2042 d=0.50 min @ (0.00, 0.12, 0.00) sse = 176414.1, tmin=5.9705 tol=1.0e+00, sigma=0.5, host=linux, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=0.050, l_spring=0.500, l_dist=5.000 using quadratic fit line minimization MRISrigidBodyAlignGlobal() done 5.97 min curvature mean = -0.002, std = 0.963 curvature mean = 0.008, std = 0.950 curvature mean = -0.005, std = 0.975 curvature mean = 0.003, std = 0.978 curvature mean = -0.006, std = 0.976 curvature mean = 0.001, std = 0.991 2 Reading smoothwm curvature mean = -0.034, std = 0.309 curvature mean = 0.004, std = 0.071 curvature mean = 0.038, std = 0.363 curvature mean = 0.004, std = 0.085 curvature mean = 0.010, std = 0.543 curvature mean = 0.003, std = 0.093 curvature mean = 0.005, std = 0.669 curvature mean = 0.004, std = 0.097 curvature mean = 0.000, std = 0.754 MRISregister() return, current seed 0 writing registered surface to ../surf/rh.sphere.reg... expanding nbhd size to 1 #-------------------------------------------- #@# Jacobian white rh Fri Apr 5 22:32:39 CEST 2013 mris_jacobian ../surf/rh.white ../surf/rh.sphere.reg ../surf/rh.jacobian_white reading surface from ../surf/rh.white... writing curvature file ../surf/rh.jacobian_white #-------------------------------------------- #@# AvgCurv rh Fri Apr 5 22:32:40 CEST 2013 /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/scripts mrisp_paint -a 5 /usr/local/freesurfer/average/rh.average.curvature.filled.buckner40.tif#6 ../surf/rh.sphere.reg ../surf/rh.avg_curv averaging curvature patterns 5 times... reading surface from ../surf/rh.sphere.reg... reading template parameterization from /usr/local/freesurfer/average/rh.average.curvature.filled.buckner40.tif... writing curvature file to ../surf/rh.avg_curv... #----------------------------------------- #@# Cortical Parc rh Fri Apr 5 22:32:41 CEST 2013 /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/scripts mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.mgz -seed 1234 ACC019 rh ../surf/rh.sphere.reg /usr/local/freesurfer/average/rh.curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs ../label/rh.aparc.annot setting seed for random number generator to 1234 using ../mri/aseg.mgz aseg volume to correct midline $Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $ $Id: mrisurf.c,v 1.693.2.4 2012/11/07 22:38:00 nicks Exp $ reading atlas from /usr/local/freesurfer/average/rh.curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs... reading color table from GCSA file.... average std = 0.7 using min determinant for regularization = 0.006 0 singular and 311 ill-conditioned covariance matrices regularized input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature labeling surface... 1084 labels changed using aseg relabeling using gibbs priors... 000: 2666 changed, 115847 examined... 001: 625 changed, 11350 examined... 002: 145 changed, 3462 examined... 003: 58 changed, 870 examined... 004: 21 changed, 304 examined... 005: 8 changed, 127 examined... 006: 3 changed, 42 examined... 007: 1 changed, 18 examined... 008: 1 changed, 5 examined... 009: 0 changed, 6 examined... 188 labels changed using aseg 000: 87 total segments, 48 labels (252 vertices) changed 001: 38 total segments, 1 labels (17 vertices) changed 002: 37 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 42 changed) rationalizing unknown annotations with cortex label relabeling unknown label... relabeling corpuscallosum label... 1551 vertices marked for relabeling... 1551 labels changed in reclassification. writing output to ../label/rh.aparc.annot... classification took 0 minutes and 28 seconds. #-------------------------------------------- #@# Make Pial Surf rh Fri Apr 5 22:33:09 CEST 2013 /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/scripts mris_make_surfaces -aseg aseg -white NOWRITE -mgz -T1 brain.finalsurfs ACC019 rh -white NOWRITE indicates that white, curv, area, and cortex.label files will not be written... using aseg volume aseg to prevent surfaces crossing the midline INFO: assuming MGZ format for volumes. using brain.finalsurfs as T1 volume... $Id: mris_make_surfaces.c,v 1.127.2.3 2012/11/07 19:57:28 nicks Exp $ $Id: mrisurf.c,v 1.693.2.4 2012/11/07 22:38:00 nicks Exp $ reading volume /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/filled.mgz... reading volume /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/brain.finalsurfs.mgz... reading volume /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/wm.mgz... 10333 bright wm thresholded. 54 bright non-wm voxels segmented. reading original surface position from /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.orig... computing class statistics... border white: 226967 voxels (1.35%) border gray 238004 voxels (1.42%) WM (95.0): 96.0 +- 7.1 [70.0 --> 110.0] GM (85.0) : 82.5 +- 11.4 [30.0 --> 110.0] setting MIN_GRAY_AT_WHITE_BORDER to 64.6 (was 70) setting MAX_BORDER_WHITE to 110.1 (was 105) setting MIN_BORDER_WHITE to 76.0 (was 85) setting MAX_CSF to 41.7 (was 40) setting MAX_GRAY to 95.9 (was 95) setting MAX_GRAY_AT_CSF_BORDER to 70.3 (was 75) setting MIN_GRAY_AT_CSF_BORDER to 41.7 (was 40) smoothing contralateral hemisphere... intensity peaks found at WM=103, GM=76 using class modes intead of means.... mean inside = 95.1, mean outside = 79.8 smoothing surface for 5 iterations... reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) repositioning cortical surface to gray/white boundary reading volume /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/aseg.mgz... smoothing T1 volume with sigma = 2.000 vertex spacing 0.82 +- 0.22 (0.03-->4.89) (max @ vno 77723 --> 115485) face area 0.28 +- 0.12 (0.00-->2.91) mean absolute distance = 1.90 +- 1.88 3832 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... inhibiting deformation at non-cortical midline structures... removing 2 vertex label from ripped group deleting segment 3 with 215 points - only 0.00% unknown removing 3 vertex label from ripped group deleting segment 4 with 3 points - only 0.00% unknown deleting segment 6 with 17 points - only 0.00% unknown removing 2 vertex label from ripped group deleting segment 8 with 6 points - only 0.00% unknown mean border=93.7, 134 (134) missing vertices, mean dist -0.9 [2.4 (%59.0)->0.8 (%41.0))] %25 local maxima, %55 large gradients and %15 min vals, 0 gradients ignored tol=1.0e-04, sigma=2.0, host=linux, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 1 randomSeed 0 smoothing T1 volume with sigma = 1.000 vertex spacing 0.88 +- 0.27 (0.03-->5.77) (max @ vno 77723 --> 115485) face area 0.28 +- 0.14 (0.00-->3.98) mean absolute distance = 0.93 +- 1.08 3406 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=4842740.5, rms=11.22 001: dt: 0.5000, sse=4719566.0, rms=7.855 (0.000%) 002: dt: 0.5000, sse=4493961.0, rms=5.242 (0.000%) 003: dt: 0.5000, sse=4674777.5, rms=3.618 (0.000%) 004: dt: 0.5000, sse=4870366.0, rms=2.902 (0.000%) 005: dt: 0.5000, sse=4955935.0, rms=2.632 (0.000%) 006: dt: 0.5000, sse=5042572.5, rms=2.523 (0.000%) 007: dt: 0.5000, sse=5055736.5, rms=2.464 (0.000%) rms = 2.44, time step reduction 1 of 3 to 0.250... 008: dt: 0.5000, sse=5109173.0, rms=2.436 (0.000%) 009: dt: 0.2500, sse=3164726.5, rms=1.744 (0.000%) 010: dt: 0.2500, sse=2956637.2, rms=1.620 (0.000%) rms = 1.60, time step reduction 2 of 3 to 0.125... 011: dt: 0.2500, sse=2875769.0, rms=1.597 (0.000%) rms = 1.58, time step reduction 3 of 3 to 0.062... 012: dt: 0.1250, sse=2836969.2, rms=1.579 (0.000%) positioning took 0.7 minutes inhibiting deformation at non-cortical midline structures... deleting segment 3 with 387 points - only 0.00% unknown deleting segment 4 with 8 points - only 0.00% unknown removing 3 vertex label from ripped group deleting segment 7 with 43 points - only 0.00% unknown removing 2 vertex label from ripped group deleting segment 11 with 65 points - only 20.00% unknown removing 1 vertex label from ripped group deleting segment 13 with 1 points - only 0.00% unknown removing 1 vertex label from ripped group deleting segment 14 with 1 points - only 0.00% unknown deleting segment 15 with 37 points - only 0.00% unknown mean border=91.5, 184 (68) missing vertices, mean dist -0.1 [1.5 (%33.3)->0.6 (%66.7))] %51 local maxima, %40 large gradients and % 4 min vals, 0 gradients ignored tol=1.0e-04, sigma=1.0, host=linux, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 vertex spacing 0.86 +- 0.25 (0.06-->4.43) (max @ vno 115194 --> 115197) face area 0.32 +- 0.16 (0.00-->4.23) mean absolute distance = 0.55 +- 0.85 4619 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=3418121.5, rms=5.13 013: dt: 0.5000, sse=3693884.2, rms=3.120 (0.000%) 014: dt: 0.5000, sse=4073576.0, rms=2.357 (0.000%) 015: dt: 0.5000, sse=4324936.5, rms=2.231 (0.000%) rms = 2.23, time step reduction 1 of 3 to 0.250... 016: dt: 0.5000, sse=4544739.5, rms=2.226 (0.000%) 017: dt: 0.2500, sse=3206791.5, rms=1.486 (0.000%) 018: dt: 0.2500, sse=3032667.8, rms=1.371 (0.000%) rms = 1.36, time step reduction 2 of 3 to 0.125... 019: dt: 0.2500, sse=2967907.8, rms=1.356 (0.000%) rms = 1.34, time step reduction 3 of 3 to 0.062... 020: dt: 0.1250, sse=2937474.5, rms=1.342 (0.000%) positioning took 0.5 minutes inhibiting deformation at non-cortical midline structures... removing 1 vertex label from ripped group deleting segment 1 with 336 points - only 0.00% unknown removing 3 vertex label from ripped group deleting segment 2 with 3 points - only 0.00% unknown removing 3 vertex label from ripped group deleting segment 5 with 5 points - only 0.00% unknown removing 3 vertex label from ripped group deleting segment 7 with 36 points - only 0.00% unknown removing 3 vertex label from ripped group deleting segment 9 with 65 points - only 20.00% unknown deleting segment 10 with 12 points - only 58.33% unknown deleting segment 11 with 8 points - only 0.00% unknown deleting segment 12 with 35 points - only 0.00% unknown removing 3 vertex label from ripped group deleting segment 13 with 3 points - only 0.00% unknown removing 2 vertex label from ripped group deleting segment 14 with 2 points - only 0.00% unknown mean border=92.2, 195 (57) missing vertices, mean dist -0.2 [0.8 (%47.8)->0.3 (%52.2))] %71 local maxima, %22 large gradients and % 2 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.5, host=linux, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 vertex spacing 0.86 +- 0.25 (0.09-->4.74) (max @ vno 115194 --> 115197) face area 0.31 +- 0.15 (0.00-->4.14) mean absolute distance = 0.41 +- 0.67 3971 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=3077186.2, rms=2.94 021: dt: 0.5000, sse=3425613.0, rms=1.944 (0.000%) 022: dt: 0.5000, sse=3738328.2, rms=1.844 (0.000%) rms = 1.97, time step reduction 1 of 3 to 0.250... 023: dt: 0.2500, sse=3292519.5, rms=1.452 (0.000%) 024: dt: 0.2500, sse=3130153.5, rms=1.284 (0.000%) rms = 1.26, time step reduction 2 of 3 to 0.125... 025: dt: 0.2500, sse=3079957.0, rms=1.259 (0.000%) rms = 1.25, time step reduction 3 of 3 to 0.062... 026: dt: 0.1250, sse=3053868.8, rms=1.245 (0.000%) positioning took 0.4 minutes inhibiting deformation at non-cortical midline structures... removing 1 vertex label from ripped group deleting segment 1 with 359 points - only 0.00% unknown removing 3 vertex label from ripped group deleting segment 2 with 3 points - only 0.00% unknown removing 4 vertex label from ripped group deleting segment 4 with 4 points - only 0.00% unknown deleting segment 5 with 31 points - only 0.00% unknown removing 3 vertex label from ripped group deleting segment 7 with 22 points - only 22.73% unknown deleting segment 8 with 12 points - only 58.33% unknown deleting segment 9 with 8 points - only 0.00% unknown deleting segment 10 with 35 points - only 0.00% unknown removing 2 vertex label from ripped group deleting segment 11 with 2 points - only 0.00% unknown mean border=92.6, 225 (53) missing vertices, mean dist -0.1 [0.6 (%47.6)->0.3 (%52.4))] %79 local maxima, %15 large gradients and % 1 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.2, host=linux, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 repositioning cortical surface to gray/csf boundary. smoothing T1 volume with sigma = 2.000 averaging target values for 5 iterations... 000: dt: 0.0000, sse=3100597.8, rms=1.98 027: dt: 0.5000, sse=3861674.2, rms=1.395 (0.000%) rms = 1.60, time step reduction 1 of 3 to 0.250... 028: dt: 0.2500, sse=3588400.8, rms=1.137 (0.000%) 029: dt: 0.2500, sse=3477409.5, rms=1.060 (0.000%) rms = 1.04, time step reduction 2 of 3 to 0.125... 030: dt: 0.2500, sse=3487422.2, rms=1.039 (0.000%) rms = 1.03, time step reduction 3 of 3 to 0.062... 031: dt: 0.1250, sse=3482646.8, rms=1.035 (0.000%) positioning took 0.3 minutes inhibiting deformation at non-cortical midline structures... removing 3 vertex label from ripped group smoothing surface for 5 iterations... mean border=60.6, 128 (128) missing vertices, mean dist 1.4 [1.0 (%0.0)->2.4 (%100.0))] %27 local maxima, %27 large gradients and %41 min vals, 5377 gradients ignored tol=1.0e-04, sigma=2.0, host=linux, nav=16, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 1.000 averaging target values for 5 iterations... 000: dt: 0.0000, sse=24842670.0, rms=32.19 001: dt: 0.5000, sse=20320308.0, rms=28.830 (0.000%) 002: dt: 0.5000, sse=16571449.0, rms=25.743 (0.000%) 003: dt: 0.5000, sse=13483090.0, rms=22.922 (0.000%) 004: dt: 0.5000, sse=10999791.0, rms=20.308 (0.000%) 005: dt: 0.5000, sse=9118177.0, rms=17.937 (0.000%) 006: dt: 0.5000, sse=7809257.5, rms=15.866 (0.000%) 007: dt: 0.5000, sse=6973519.5, rms=14.026 (0.000%) 008: dt: 0.5000, sse=6402408.0, rms=12.372 (0.000%) 009: dt: 0.5000, sse=6016715.0, rms=10.830 (0.000%) 010: dt: 0.5000, sse=5673039.5, rms=9.369 (0.000%) 011: dt: 0.5000, sse=5443668.5, rms=8.013 (0.000%) 012: dt: 0.5000, sse=5321283.5, rms=6.861 (0.000%) 013: dt: 0.5000, sse=5307655.5, rms=5.954 (0.000%) 014: dt: 0.5000, sse=5304185.5, rms=5.309 (0.000%) 015: dt: 0.5000, sse=5343397.0, rms=4.863 (0.000%) 016: dt: 0.5000, sse=5368893.0, rms=4.607 (0.000%) 017: dt: 0.5000, sse=5388899.0, rms=4.436 (0.000%) 018: dt: 0.5000, sse=5412267.0, rms=4.348 (0.000%) 019: dt: 0.5000, sse=5424610.0, rms=4.270 (0.000%) rms = 4.23, time step reduction 1 of 3 to 0.250... 020: dt: 0.5000, sse=5456515.0, rms=4.235 (0.000%) 021: dt: 0.2500, sse=3324230.2, rms=3.172 (0.000%) 022: dt: 0.2500, sse=3104074.5, rms=2.850 (0.000%) 023: dt: 0.2500, sse=2953415.2, rms=2.759 (0.000%) rms = 2.71, time step reduction 2 of 3 to 0.125... 024: dt: 0.2500, sse=2914418.2, rms=2.714 (0.000%) 025: dt: 0.1250, sse=2733377.8, rms=2.583 (0.000%) rms = 2.57, time step reduction 3 of 3 to 0.062... 026: dt: 0.1250, sse=2711773.2, rms=2.569 (0.000%) positioning took 1.5 minutes mean border=55.7, 1028 (7) missing vertices, mean dist 0.2 [0.3 (%25.6)->0.4 (%74.4))] %46 local maxima, %14 large gradients and %34 min vals, 3808 gradients ignored tol=1.0e-04, sigma=1.0, host=linux, nav=8, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 averaging target values for 5 iterations... 000: dt: 0.0000, sse=4097373.2, rms=7.84 027: dt: 0.5000, sse=3873849.0, rms=5.204 (0.000%) 028: dt: 0.5000, sse=4926759.5, rms=4.714 (0.000%) 029: dt: 0.5000, sse=4792968.5, rms=4.497 (0.000%) rms = 4.52, time step reduction 1 of 3 to 0.250... 030: dt: 0.2500, sse=3755094.0, rms=3.404 (0.000%) 031: dt: 0.2500, sse=3481276.2, rms=2.921 (0.000%) 032: dt: 0.2500, sse=3352762.2, rms=2.790 (0.000%) rms = 2.74, time step reduction 2 of 3 to 0.125... 033: dt: 0.2500, sse=3338779.5, rms=2.743 (0.000%) 034: dt: 0.1250, sse=3075859.5, rms=2.461 (0.000%) rms = 2.42, time step reduction 3 of 3 to 0.062... 035: dt: 0.1250, sse=3048603.0, rms=2.421 (0.000%) positioning took 0.6 minutes mean border=54.2, 1578 (3) missing vertices, mean dist 0.0 [0.2 (%35.6)->0.2 (%64.4))] %49 local maxima, %12 large gradients and %33 min vals, 3052 gradients ignored tol=1.0e-04, sigma=0.5, host=linux, nav=4, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 averaging target values for 5 iterations... 000: dt: 0.0000, sse=3166360.5, rms=3.28 rms = 4.09, time step reduction 1 of 3 to 0.250... 036: dt: 0.2500, sse=3045402.5, rms=2.729 (0.000%) 037: dt: 0.2500, sse=3138657.0, rms=2.612 (0.000%) rms = 2.57, time step reduction 2 of 3 to 0.125... 038: dt: 0.2500, sse=3174919.8, rms=2.574 (0.000%) 039: dt: 0.1250, sse=3065568.5, rms=2.461 (0.000%) rms = 2.44, time step reduction 3 of 3 to 0.062... 040: dt: 0.1250, sse=3063072.5, rms=2.441 (0.000%) positioning took 0.3 minutes mean border=53.7, 3151 (3) missing vertices, mean dist 0.0 [0.2 (%46.2)->0.2 (%53.8))] %49 local maxima, %11 large gradients and %32 min vals, 2590 gradients ignored tol=1.0e-04, sigma=0.2, host=linux, nav=2, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 writing pial surface to /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.pial... writing smoothed curvature to rh.curv.pial 000: dt: 0.0000, sse=3083927.5, rms=2.64 rms = 3.24, time step reduction 1 of 3 to 0.250... 041: dt: 0.2500, sse=3048624.8, rms=2.479 (0.000%) 042: dt: 0.2500, sse=3177045.8, rms=2.427 (0.000%) rms = 2.40, time step reduction 2 of 3 to 0.125... 043: dt: 0.2500, sse=3184564.0, rms=2.400 (0.000%) 044: dt: 0.1250, sse=3101152.8, rms=2.310 (0.000%) rms = 2.29, time step reduction 3 of 3 to 0.062... 045: dt: 0.1250, sse=3100480.0, rms=2.289 (0.000%) positioning took 0.3 minutes writing curvature file /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.curv.pial writing smoothed area to rh.area.pial writing curvature file /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.area.pial vertex spacing 0.96 +- 0.40 (0.07-->8.07) (max @ vno 115466 --> 115469) face area 0.37 +- 0.28 (0.00-->12.19) measuring cortical thickness... writing cortical thickness estimate to 'thickness' file. 0 of 115847 vertices processed 25000 of 115847 vertices processed 50000 of 115847 vertices processed 75000 of 115847 vertices processed 100000 of 115847 vertices processed 0 of 115847 vertices processed 25000 of 115847 vertices processed 50000 of 115847 vertices processed 75000 of 115847 vertices processed 100000 of 115847 vertices processed thickness calculation complete, 828:1950 truncations. 22786 vertices at 0 distance 66821 vertices at 1 distance 68176 vertices at 2 distance 37304 vertices at 3 distance 15893 vertices at 4 distance 6158 vertices at 5 distance 2361 vertices at 6 distance 838 vertices at 7 distance 302 vertices at 8 distance 137 vertices at 9 distance 84 vertices at 10 distance 69 vertices at 11 distance 75 vertices at 12 distance 61 vertices at 13 distance 62 vertices at 14 distance 36 vertices at 15 distance 30 vertices at 16 distance 26 vertices at 17 distance 22 vertices at 18 distance 13 vertices at 19 distance 14 vertices at 20 distance writing curvature file /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.thickness positioning took 6.3 minutes #-------------------------------------------- #@# Surf Volume rh Fri Apr 5 22:39:26 CEST 2013 /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf mris_calc -o rh.area.mid rh.area add rh.area.pial Saving result to 'rh.area.mid' (type = MRI_CURV_FILE) [ ok ] mris_calc -o rh.area.mid rh.area.mid div 2 Saving result to 'rh.area.mid' (type = MRI_CURV_FILE) [ ok ] mris_calc -o rh.volume rh.area.mid mul rh.thickness Saving result to 'rh.volume' (type = MRI_CURV_FILE) [ ok ] #----------------------------------------- #@# WM/GM Contrast rh Fri Apr 5 22:39:26 CEST 2013 /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/scripts pctsurfcon --s ACC019 --rh-only Log file is /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/scripts/pctsurfcon.log Fri Apr 5 22:39:26 CEST 2013 setenv SUBJECTS_DIR /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer cd /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/scripts /usr/local/freesurfer/bin/pctsurfcon $Id: pctsurfcon,v 1.11.2.1 2011/11/10 20:37:10 nicks Exp $ Linux linux-To-be-filled-by-O-E-M 3.2.0-39-generic #62-Ubuntu SMP Thu Feb 28 00:28:53 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux FREESURFER_HOME /usr/local/freesurfer mri_vol2surf --mov /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/rawavg.mgz --hemi rh --noreshape --interp trilinear --projdist -1 --o /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/tmp.pctsurfcon.11416/rh.wm.mgh --regheader ACC019 --cortex srcvol = /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/rawavg.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = rh ProjDist = -1 reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Computing registration from header. Using /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/orig.mgz as target reference. Loading label /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/label/rh.cortex.label Reading surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface 1 -1 -1 -1 using old Done mapping volume to surface Number of source voxels hit = 63968 Masking with /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/label/rh.cortex.label Writing to /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/tmp.pctsurfcon.11416/rh.wm.mgh Dim: 115847 1 1 mri_vol2surf --mov /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/rawavg.mgz --hemi rh --noreshape --interp trilinear --o /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/tmp.pctsurfcon.11416/rh.gm.mgh --projfrac 0.3 --regheader ACC019 --cortex srcvol = /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/rawavg.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = rh ProjFrac = 0.3 thickness = thickness reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Computing registration from header. Using /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/orig.mgz as target reference. Loading label /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/label/rh.cortex.label Reading surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.white Done reading source surface Reading thickness /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.thickness Done Mapping Source Volume onto Source Subject Surface 1 0.3 0.3 0.3 using old Done mapping volume to surface Number of source voxels hit = 75193 Masking with /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/label/rh.cortex.label Writing to /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/tmp.pctsurfcon.11416/rh.gm.mgh Dim: 115847 1 1 mri_concat /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/tmp.pctsurfcon.11416/rh.wm.mgh /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/tmp.pctsurfcon.11416/rh.gm.mgh --paired-diff-norm --mul 100 --o /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.w-g.pct.mgh ninputs = 2 Checking inputs nframestot = 2 Allocing output Done allocing Combining pairs nframes = 1 Multiplying by 100.000000 Writing to /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.w-g.pct.mgh mri_segstats --in /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.w-g.pct.mgh --annot ACC019 rh aparc --sum /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/stats/rh.w-g.pct.stats --snr $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $ cwd cmdline mri_segstats --in /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.w-g.pct.mgh --annot ACC019 rh aparc --sum /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/stats/rh.w-g.pct.stats --snr sysname Linux hostname linux-To-be-filled-by-O-E-M machine x86_64 user linux UseRobust 0 Constructing seg from annotation Reading annotation reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Seg base 2000 Loading /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.w-g.pct.mgh Vertex Area is 0.617795 mm^3 Generating list of segmentation ids Found 36 segmentations Computing statistics for each segmentation 0 2000 unknown 0 0.000 1 2001 bankssts 1160 774.151 2 2002 caudalanteriorcingulate 1046 633.260 3 2003 caudalmiddlefrontal 2530 1620.015 4 2004 corpuscallosum 0 0.000 5 2005 cuneus 2470 1448.072 6 2006 entorhinal 405 275.973 7 2007 fusiform 3281 2055.856 8 2008 inferiorparietal 6180 3945.882 9 2009 inferiortemporal 4119 2491.713 10 2010 isthmuscingulate 1466 886.387 11 2011 lateraloccipital 6127 3622.850 12 2012 lateralorbitofrontal 3403 2052.469 13 2013 lingual 3826 2338.361 14 2014 medialorbitofrontal 2459 1444.124 15 2015 middletemporal 4406 2740.747 16 2016 parahippocampal 844 536.644 17 2017 paracentral 1993 1171.506 18 2018 parsopercularis 1548 982.481 19 2019 parsorbitalis 1007 553.437 20 2020 parstriangularis 1713 1044.293 21 2021 pericalcarine 2397 1534.887 22 2022 postcentral 5581 3200.357 23 2023 posteriorcingulate 1689 1062.154 24 2024 precentral 6689 4031.958 25 2025 precuneus 4437 2734.792 26 2026 rostralanteriorcingulate 644 380.533 27 2027 rostralmiddlefrontal 7764 4868.657 28 2028 superiorfrontal 8121 5079.772 29 2029 superiorparietal 6924 4297.333 30 2030 superiortemporal 4589 2890.455 31 2031 supramarginal 5002 3179.324 32 2032 frontalpole 378 217.746 33 2033 temporalpole 563 383.329 34 2034 transversetemporal 591 268.940 35 2035 insula 3533 2309.881 Reporting on 34 segmentations mri_segstats done Cleaning up #----------------------------------------- #@# Parcellation Stats rh Fri Apr 5 22:39:31 CEST 2013 /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/scripts mris_anatomical_stats -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.stats -b -a ../label/rh.aparc.annot -c ../label/aparc.annot.ctab ACC019 rh white computing statistics for each annotation in ../label/rh.aparc.annot. reading volume /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/wm.mgz... reading input surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.white... reading input pial surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.pial... reading input white surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.white... INFO: assuming MGZ format for volumes. INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Saving annotation colortable ../label/aparc.annot.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name 1160 774 2181 3.026 0.562 0.129 0.041 23 2.0 bankssts 1046 633 2176 3.244 0.829 0.150 0.074 31 2.7 caudalanteriorcingulate 2530 1620 4654 2.689 0.441 0.127 0.041 26 4.5 caudalmiddlefrontal 2470 1448 3876 2.387 0.550 0.149 0.054 39 5.6 cuneus 405 276 1693 3.927 0.769 0.131 0.045 6 0.6 entorhinal 3281 2056 8104 3.513 0.735 0.153 0.067 99 9.8 fusiform 6180 3946 11607 2.693 0.575 0.147 0.060 108 15.1 inferiorparietal 4119 2492 9336 3.153 0.730 0.164 0.122 244 23.9 inferiortemporal 1466 886 2706 2.759 1.002 0.149 0.062 28 3.7 isthmuscingulate 6127 3623 10020 2.530 0.713 0.148 0.067 122 18.8 lateraloccipital 3403 2052 6048 2.860 0.735 0.150 0.129 161 10.5 lateralorbitofrontal 3826 2338 6055 2.337 0.633 0.146 0.056 66 9.1 lingual 2459 1444 4501 2.827 0.686 0.142 0.128 64 7.4 medialorbitofrontal 4406 2741 10358 3.187 0.632 0.148 0.225 229 13.0 middletemporal 844 537 1910 3.086 0.816 0.104 0.031 7 0.9 parahippocampal 1993 1172 3228 2.628 0.656 0.114 0.122 490 3.5 paracentral 1548 982 2807 2.702 0.443 0.132 0.043 20 2.7 parsopercularis 1007 553 2091 3.160 0.529 0.140 0.052 14 2.3 parsorbitalis 1713 1044 3098 2.642 0.505 0.125 0.038 21 2.9 parstriangularis 2397 1535 3048 2.099 0.617 0.150 0.064 60 6.3 pericalcarine 5581 3200 7721 2.140 0.633 0.110 0.035 58 8.4 postcentral 1689 1062 3205 2.621 0.845 0.140 0.049 52 3.6 posteriorcingulate 6689 4032 11610 2.707 0.531 0.123 0.047 78 14.7 precentral 4437 2735 7933 2.706 0.677 0.131 0.049 64 8.2 precuneus 644 381 1235 3.137 0.707 0.107 0.045 6 1.1 rostralanteriorcingulate 7764 4869 13764 2.537 0.524 0.141 0.056 118 18.4 rostralmiddlefrontal 8121 5080 17842 2.993 0.684 0.147 0.081 233 23.7 superiorfrontal 6924 4297 10536 2.256 0.510 0.139 0.141 523 25.4 superiorparietal 4589 2890 9427 2.943 0.658 0.108 0.030 43 5.6 superiortemporal 5002 3179 9177 2.679 0.511 0.134 0.046 71 9.5 supramarginal 378 218 881 2.908 0.582 0.165 0.083 8 1.2 frontalpole 563 383 2402 3.864 0.625 0.146 0.047 9 1.2 temporalpole 591 269 820 2.585 0.425 0.099 0.028 5 0.7 transversetemporal 3533 2310 6975 3.159 0.942 0.164 7.310 3538 15.7 insula #----------------------------------------- #@# Cortical Parc 2 rh Fri Apr 5 22:39:39 CEST 2013 /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/scripts mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.mgz -seed 1234 ACC019 rh ../surf/rh.sphere.reg /usr/local/freesurfer/average/rh.destrieux.simple.2009-07-29.gcs ../label/rh.aparc.a2009s.annot setting seed for random number generator to 1234 using ../mri/aseg.mgz aseg volume to correct midline $Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $ $Id: mrisurf.c,v 1.693.2.4 2012/11/07 22:38:00 nicks Exp $ reading atlas from /usr/local/freesurfer/average/rh.destrieux.simple.2009-07-29.gcs... reading color table from GCSA file.... average std = 1.9 0.2 using min determinant for regularization = 0.000 0 singular and 851 ill-conditioned covariance matrices regularized input 1: CURVATURE FILE, flags 0, avgs 0, name sulc input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature labeling surface... 23 labels changed using aseg relabeling using gibbs priors... 000: 8326 changed, 115847 examined... 001: 2040 changed, 32160 examined... 002: 603 changed, 10331 examined... 003: 262 changed, 3385 examined... 004: 108 changed, 1463 examined... 005: 64 changed, 624 examined... 006: 40 changed, 360 examined... 007: 14 changed, 225 examined... 008: 15 changed, 91 examined... 009: 12 changed, 82 examined... 010: 12 changed, 61 examined... 011: 5 changed, 53 examined... 012: 2 changed, 33 examined... 013: 0 changed, 11 examined... 16 labels changed using aseg 000: 255 total segments, 174 labels (2059 vertices) changed 001: 97 total segments, 16 labels (89 vertices) changed 002: 82 total segments, 1 labels (4 vertices) changed 003: 81 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 118 changed) rationalizing unknown annotations with cortex label relabeling Medial_wall label... 1134 vertices marked for relabeling... 1134 labels changed in reclassification. writing output to ../label/rh.aparc.a2009s.annot... classification took 0 minutes and 32 seconds. #----------------------------------------- #@# Parcellation Stats 2 rh Fri Apr 5 22:40:11 CEST 2013 /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/scripts mris_anatomical_stats -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.a2009s.stats -b -a ../label/rh.aparc.a2009s.annot -c ../label/aparc.annot.a2009s.ctab ACC019 rh white computing statistics for each annotation in ../label/rh.aparc.a2009s.annot. reading volume /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/wm.mgz... reading input surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.white... reading input pial surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.pial... reading input white surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.white... INFO: assuming MGZ format for volumes. INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. reading colortable from annotation file... colortable with 76 entries read (originally /autofs/space/birn_044/users/christophe_atlas_rebuild//scripts_2008/Simple_surface_labels2009.txt) Saving annotation colortable ../label/aparc.annot.a2009s.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name 899 560 1573 2.595 0.475 0.159 0.060 15 2.2 G_and_S_frontomargin 1054 677 2240 2.938 0.599 0.155 0.110 39 6.9 G_and_S_occipital_inf 1311 688 2023 2.390 0.629 0.116 0.064 19 4.8 G_and_S_paracentral 1459 854 2684 2.806 0.507 0.122 0.033 17 2.0 G_and_S_subcentral 1795 1059 3262 2.516 0.620 0.141 0.054 29 4.1 G_and_S_transv_frontopol 1929 1217 3703 3.186 0.525 0.126 0.054 25 3.8 G_and_S_cingul-Ant 1071 689 2254 3.135 0.633 0.133 0.061 26 2.4 G_and_S_cingul-Mid-Ant 1169 776 2303 2.755 0.506 0.127 0.042 12 2.0 G_and_S_cingul-Mid-Post 524 303 1446 3.432 0.709 0.163 0.072 33 1.4 G_cingul-Post-dorsal 328 192 837 3.124 0.759 0.168 0.075 7 0.8 G_cingul-Post-ventral 2455 1432 3828 2.306 0.540 0.154 0.062 46 6.2 G_cuneus 1015 599 2242 2.883 0.378 0.159 0.069 23 2.9 G_front_inf-Opercular 235 134 588 3.242 0.334 0.141 0.054 3 0.5 G_front_inf-Orbital 906 495 1794 2.687 0.471 0.139 0.049 15 1.9 G_front_inf-Triangul 3579 2157 7810 2.708 0.514 0.159 0.069 68 11.3 G_front_middle 5790 3399 14300 3.174 0.654 0.165 0.133 697 21.8 G_front_sup 495 288 937 3.126 0.568 0.224 51.511 3444 1.6 G_Ins_lg_and_S_cent_ins 464 261 1406 4.071 0.650 0.176 0.185 26 4.3 G_insular_short 2137 1240 4805 2.931 0.594 0.177 0.093 57 8.5 G_occipital_middle 1489 872 2233 2.151 0.451 0.142 0.054 25 3.1 G_occipital_sup 1413 834 3923 3.539 0.664 0.175 0.104 73 6.9 G_oc-temp_lat-fusifor 2445 1380 3918 2.324 0.620 0.148 0.062 46 6.4 G_oc-temp_med-Lingual 1430 926 4105 3.509 1.064 0.146 0.055 26 3.3 G_oc-temp_med-Parahip 2339 1309 4840 2.820 0.761 0.152 0.155 73 9.9 G_orbital 2052 1256 4343 2.703 0.574 0.161 0.068 44 5.4 G_pariet_inf-Angular 2414 1465 5341 2.851 0.516 0.146 0.055 41 5.8 G_pariet_inf-Supramar 2172 1325 3937 2.386 0.546 0.152 0.130 224 16.9 G_parietal_sup 2043 987 2961 2.254 0.524 0.115 0.039 28 3.4 G_postcentral 2607 1323 5039 2.876 0.431 0.121 0.049 31 5.6 G_precentral 1938 1137 4093 2.679 0.674 0.154 0.069 42 4.7 G_precuneus 743 391 1414 2.614 0.823 0.165 0.271 36 3.9 G_rectus 369 214 455 2.297 0.991 0.122 0.097 6 1.1 G_subcallosal 481 203 760 2.820 0.586 0.110 0.033 5 0.7 G_temp_sup-G_T_transv 1587 911 4124 3.183 0.487 0.131 0.043 24 2.7 G_temp_sup-Lateral 532 354 1275 3.174 0.677 0.085 0.022 3 0.5 G_temp_sup-Plan_polar 550 358 1041 2.570 0.454 0.095 0.022 3 0.4 G_temp_sup-Plan_tempo 2257 1265 5959 3.276 0.811 0.184 0.162 212 18.8 G_temporal_inf 2652 1564 7017 3.276 0.642 0.159 0.114 77 9.6 G_temporal_middle 347 236 561 2.522 0.458 0.089 0.020 2 0.3 Lat_Fis-ant-Horizont 168 120 296 2.442 0.419 0.127 0.035 2 0.2 Lat_Fis-ant-Vertical 1415 979 2079 2.559 0.554 0.117 0.039 13 2.1 Lat_Fis-post 3860 2196 5312 2.146 0.657 0.146 0.056 64 9.2 Pole_occipital 1340 848 5095 3.925 0.581 0.150 0.051 24 2.9 Pole_temporal 2219 1509 2970 2.211 0.683 0.139 0.049 49 4.7 S_calcarine 2499 1763 2995 1.926 0.620 0.106 0.025 13 2.7 S_central 1047 727 1560 2.320 0.516 0.089 0.017 4 0.7 S_cingul-Marginalis 570 360 1019 3.319 0.530 0.123 0.042 5 1.1 S_circular_insula_ant 1323 879 1991 2.614 0.858 0.111 0.076 31 3.0 S_circular_insula_inf 1255 865 2099 2.992 0.516 0.126 0.044 11 2.3 S_circular_insula_sup 764 534 1493 3.209 0.559 0.116 0.022 6 0.7 S_collat_transv_ant 371 236 615 3.009 0.517 0.128 0.032 3 0.5 S_collat_transv_post 1351 904 1915 2.440 0.468 0.120 0.051 16 2.3 S_front_inf 1974 1326 2808 2.421 0.502 0.119 0.035 17 2.7 S_front_middle 1758 1162 2770 2.485 0.411 0.111 0.033 12 2.3 S_front_sup 734 474 973 2.430 0.372 0.121 0.038 9 1.3 S_interm_prim-Jensen 2590 1675 3436 2.253 0.502 0.131 0.234 270 4.8 S_intrapariet_and_P_trans 613 394 801 2.677 0.544 0.147 0.046 7 1.1 S_oc_middle_and_Lunatus 1386 877 1929 2.517 0.536 0.131 0.036 16 1.9 S_oc_sup_and_transversal 693 464 1154 2.730 0.506 0.134 0.050 11 1.4 S_occipital_ant 770 478 1265 3.123 0.773 0.151 0.073 14 1.9 S_oc-temp_lat 1275 917 2295 3.003 0.599 0.110 0.026 8 1.3 S_oc-temp_med_and_Lingual 282 179 410 2.682 0.407 0.135 0.045 3 0.5 S_orbital_lateral 658 442 914 2.317 0.670 0.142 0.124 91 1.0 S_orbital_med-olfact 1381 867 2542 3.169 0.555 0.139 0.051 19 3.2 S_orbital-H_Shaped 1865 1184 2632 2.564 0.576 0.121 0.038 19 3.0 S_parieto_occipital 1532 924 1810 2.364 1.092 0.139 0.052 30 3.4 S_pericallosal 2369 1558 3046 2.155 0.463 0.112 0.027 18 2.6 S_postcentral 1524 1002 2393 2.689 0.423 0.122 0.039 14 2.5 S_precentral-inf-part 1182 800 1870 2.596 0.438 0.116 0.033 10 1.7 S_precentral-sup-part 432 276 635 2.830 0.497 0.119 0.037 3 0.6 S_suborbital 934 600 1703 3.078 0.652 0.128 0.038 10 1.5 S_subparietal 1252 817 2031 2.900 0.556 0.159 0.584 159 4.8 S_temporal_inf 4710 3199 8315 2.922 0.593 0.122 0.037 59 7.2 S_temporal_sup 314 194 479 2.723 0.417 0.097 0.019 2 0.3 S_temporal_transverse #----------------------------------------- #@# Cortical Parc 3 rh Fri Apr 5 22:40:20 CEST 2013 /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/scripts mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.mgz -seed 1234 ACC019 rh ../surf/rh.sphere.reg /usr/local/freesurfer/average/rh.DKTatlas40.gcs ../label/rh.aparc.DKTatlas40.annot setting seed for random number generator to 1234 using ../mri/aseg.mgz aseg volume to correct midline $Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $ $Id: mrisurf.c,v 1.693.2.4 2012/11/07 22:38:00 nicks Exp $ reading atlas from /usr/local/freesurfer/average/rh.DKTatlas40.gcs... reading color table from GCSA file.... average std = 0.9 using min determinant for regularization = 0.008 0 singular and 237 ill-conditioned covariance matrices regularized input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature labeling surface... 1091 labels changed using aseg relabeling using gibbs priors... 000: 2402 changed, 115847 examined... 001: 491 changed, 10185 examined... 002: 110 changed, 2765 examined... 003: 37 changed, 650 examined... 004: 15 changed, 227 examined... 005: 11 changed, 85 examined... 006: 5 changed, 67 examined... 007: 0 changed, 22 examined... 121 labels changed using aseg 000: 54 total segments, 21 labels (538 vertices) changed 001: 33 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 33 changed) rationalizing unknown annotations with cortex label relabeling unknown label... relabeling corpuscallosum label... 705 vertices marked for relabeling... 705 labels changed in reclassification. writing output to ../label/rh.aparc.DKTatlas40.annot... classification took 0 minutes and 27 seconds. #----------------------------------------- #@# Parcellation Stats 3 rh Fri Apr 5 22:40:47 CEST 2013 /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/scripts mris_anatomical_stats -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.DKTatlas40.stats -b -a ../label/rh.aparc.DKTatlas40.annot -c ../label/aparc.annot.DKTatlas40.ctab ACC019 rh white computing statistics for each annotation in ../label/rh.aparc.DKTatlas40.annot. reading volume /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/wm.mgz... reading input surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.white... reading input pial surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.pial... reading input white surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.white... INFO: assuming MGZ format for volumes. INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. reading colortable from annotation file... colortable with 36 entries read (originally /Applications/freesurfer/average/colortable_desikan_killiany.txt) Saving annotation colortable ../label/aparc.annot.DKTatlas40.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name 1002 605 2124 3.285 0.825 0.153 0.077 31 2.7 caudalanteriorcingulate 2525 1633 4642 2.690 0.443 0.130 0.042 27 4.6 caudalmiddlefrontal 2950 1741 4485 2.384 0.518 0.146 0.052 46 6.5 cuneus 443 300 1791 3.974 0.755 0.127 0.042 6 0.6 entorhinal 2817 1783 6716 3.456 0.695 0.155 0.070 89 8.8 fusiform 5467 3501 10174 2.681 0.578 0.152 0.063 102 13.8 inferiorparietal 4636 2784 10927 3.225 0.782 0.165 0.248 386 25.7 inferiortemporal 1523 919 2778 2.766 1.013 0.148 0.061 29 3.7 isthmuscingulate 6381 3803 10523 2.525 0.715 0.147 0.066 126 19.1 lateraloccipital 4090 2493 7375 2.810 0.748 0.157 0.125 186 14.5 lateralorbitofrontal 3827 2339 6076 2.340 0.634 0.146 0.056 68 8.8 lingual 2054 1196 3565 2.634 0.779 0.150 0.149 61 7.6 medialorbitofrontal 5324 3345 12060 3.139 0.624 0.141 0.075 107 13.8 middletemporal 857 541 1904 3.062 0.815 0.107 0.036 8 1.2 parahippocampal 2087 1237 3501 2.663 0.671 0.117 0.120 491 3.8 paracentral 1716 1091 3100 2.710 0.440 0.135 0.045 23 3.3 parsopercularis 1086 609 2102 3.021 0.481 0.128 0.046 13 2.1 parsorbitalis 1781 1068 3111 2.600 0.518 0.125 0.053 26 3.3 parstriangularis 2353 1507 2975 2.099 0.621 0.149 0.062 55 6.1 pericalcarine 5968 3453 8393 2.171 0.637 0.112 0.035 63 9.1 postcentral 1676 1056 3172 2.625 0.841 0.140 0.049 52 3.6 posteriorcingulate 6579 3926 11364 2.696 0.533 0.122 0.047 76 14.3 precentral 4524 2787 8096 2.660 0.689 0.130 0.049 65 8.3 precuneus 741 445 1392 3.196 0.638 0.112 0.054 9 1.3 rostralanteriorcingulate 4062 2603 7164 2.486 0.473 0.139 0.050 54 9.0 rostralmiddlefrontal 12045 7483 25102 2.890 0.670 0.144 0.073 295 32.9 superiorfrontal 5928 3681 9109 2.258 0.508 0.142 0.158 512 23.8 superiorparietal 6241 3985 14053 3.089 0.712 0.117 0.036 77 9.4 superiortemporal 4835 3082 8772 2.644 0.513 0.133 0.045 65 9.0 supramarginal 569 260 793 2.577 0.425 0.099 0.028 5 0.7 transversetemporal 2798 1802 5689 3.293 0.787 0.161 9.200 3514 11.1 insula #-------------------------------------------- #@# Cortical ribbon mask Fri Apr 5 22:40:56 CEST 2013 /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri mris_volmask --label_left_white 2 --label_left_ribbon 3 --label_right_white 41 --label_right_ribbon 42 --save_ribbon ACC019 SUBJECTS_DIR is /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer loading input data... computing distance to left white surface computing distance to left pial surface computing distance to right white surface computing distance to right pial surface hemi masks overlap voxels = 64 writing volume /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/ribbon.mgz writing ribbon files #-------------------------------------------- #@# ASeg Stats Fri Apr 5 22:48:03 CEST 2013 /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019 mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /usr/local/freesurfer/ASegStatsLUT.txt --subject ACC019 $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $ cwd cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /usr/local/freesurfer/ASegStatsLUT.txt --subject ACC019 sysname Linux hostname linux-To-be-filled-by-O-E-M machine x86_64 user linux UseRobust 0 atlas_icv (eTIV) = 1354409 mm^3 (det: 1.438344 ) Computing euler number orig.nofix lheno = -22, rheno = -58 orig.nofix lhholes = 12, rhholes = 30 Loading mri/aseg.mgz Getting Brain Volume Statistics lhCtxGM: 201599.720 200831.000 diff= 768.7 pctdiff= 0.381 rhCtxGM: 202152.471 201239.000 diff= 913.5 pctdiff= 0.452 lhCtxWM: 187265.351 188874.000 diff=-1608.6 pctdiff=-0.859 rhCtxWM: 185806.008 185068.000 diff= 738.0 pctdiff= 0.397 SubCortGMVol 49842.000 SupraTentVol 853279.549 (851349.000) diff=1930.549 pctdiff=0.226 SupraTentVolNotVent 827844.549 (825914.000) diff=1930.549 pctdiff=0.233 BrainSegVol 947608.000 (945808.000) diff=1800.000 pctdiff=0.190 BrainSegVolNotVent 919322.000 (919862.549) diff=-540.549 pctdiff=-0.059 BrainSegVolNotVent 919322.000 CerebellumVol 93137.000 VentChorVol 25435.000 3rd4th5thCSF 2851.000 CSFVol 1073.000, OptChiasmVol 249.000 MaskVol 1321816.000 Loading mri/norm.mgz Loading mri/norm.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 50 segmentations Computing statistics for each segmentation 3 4 Left-Lateral-Ventricle 12067 12066.624 4 5 Left-Inf-Lat-Vent 502 502.484 5 7 Left-Cerebellum-White-Matter 11942 11942.312 6 8 Left-Cerebellum-Cortex 33627 33626.766 7 10 Left-Thalamus-Proper 6798 6797.973 8 11 Left-Caudate 3819 3819.190 9 12 Left-Putamen 4370 4369.682 10 13 Left-Pallidum 1611 1610.514 11 14 3rd-Ventricle 971 970.989 12 15 4th-Ventricle 1025 1024.795 13 16 Brain-Stem 18303 18302.855 14 17 Left-Hippocampus 3131 3131.157 15 18 Left-Amygdala 1094 1094.081 16 24 CSF 1050 1049.534 17 26 Left-Accumbens-area 351 351.247 18 28 Left-VentralDC 3329 3329.488 19 30 Left-vessel 31 31.282 20 31 Left-choroid-plexus 1291 1291.222 23 43 Right-Lateral-Ventricle 9444 9444.183 24 44 Right-Inf-Lat-Vent 349 348.662 25 46 Right-Cerebellum-White-Matter 10995 10994.639 26 47 Right-Cerebellum-Cortex 37762 37762.117 27 49 Right-Thalamus-Proper 6074 6073.801 28 50 Right-Caudate 3230 3229.673 29 51 Right-Putamen 3970 3969.777 30 52 Right-Pallidum 1230 1230.351 31 53 Right-Hippocampus 3362 3362.340 32 54 Right-Amygdala 1167 1167.306 33 58 Right-Accumbens-area 260 259.880 34 60 Right-VentralDC 3164 3163.692 35 62 Right-vessel 38 37.867 36 63 Right-choroid-plexus 1811 1811.115 37 72 5th-Ventricle 0 0.000 38 77 WM-hypointensities 6002 6002.377 39 78 Left-WM-hypointensities 0 0.000 40 79 Right-WM-hypointensities 0 0.000 41 80 non-WM-hypointensities 31 30.936 42 81 Left-non-WM-hypointensities 0 0.000 43 82 Right-non-WM-hypointensities 0 0.000 44 85 Optic-Chiasm 254 253.730 45 251 CC_Posterior 900 899.895 46 252 CC_Mid_Posterior 307 306.723 47 253 CC_Central 410 410.002 48 254 CC_Mid_Anterior 394 394.227 49 255 CC_Anterior 890 889.536 Reporting on 45 segmentations mri_segstats done #----------------------------------------- #@# AParc-to-ASeg Fri Apr 5 22:50:43 CEST 2013 /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019 mri_aparc2aseg --s ACC019 --volmask SUBJECTS_DIR /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer subject ACC019 outvol /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/aparc+aseg.mgz useribbon 0 baseoffset 0 RipUnknown 0 Reading lh white surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.white Reading lh pial surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.pial Loading lh annotations from /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/label/lh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Reading rh white surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.white Reading rh pial surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.pial Loading rh annotations from /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/label/rh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Have color table for lh white annotation Have color table for rh white annotation Loading ribbon segmentation from /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/ribbon.mgz Building hash of lh white Building hash of lh pial Building hash of rh white Building hash of rh pial Loading aseg from /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/aseg.mgz ASeg Vox2RAS: ----------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; ------------------------- Labeling Slice 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 400707 Used brute-force search on 0 voxels Writing output aseg to /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/aparc+aseg.mgz /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019 mri_aparc2aseg --s ACC019 --volmask --a2009s SUBJECTS_DIR /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer subject ACC019 outvol /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/aparc.a2009s+aseg.mgz useribbon 0 baseoffset 10100 RipUnknown 0 Reading lh white surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.white Reading lh pial surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.pial Loading lh annotations from /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/label/lh.aparc.a2009s.annot reading colortable from annotation file... colortable with 76 entries read (originally /autofs/space/birn_044/users/christophe_atlas_rebuild//scripts_2008/Simple_surface_labels2009.txt) Reading rh white surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.white Reading rh pial surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.pial Loading rh annotations from /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/label/rh.aparc.a2009s.annot reading colortable from annotation file... colortable with 76 entries read (originally /autofs/space/birn_044/users/christophe_atlas_rebuild//scripts_2008/Simple_surface_labels2009.txt) Have color table for lh white annotation Have color table for rh white annotation Loading ribbon segmentation from /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/ribbon.mgz Building hash of lh white Building hash of lh pial Building hash of rh white Building hash of rh pial Loading aseg from /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/aseg.mgz ASeg Vox2RAS: ----------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; ------------------------- Labeling Slice 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 400707 Used brute-force search on 0 voxels Writing output aseg to /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/aparc.a2009s+aseg.mgz #----------------------------------------- #@# WMParc Fri Apr 5 22:53:16 CEST 2013 /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019 mri_aparc2aseg --s ACC019 --labelwm --hypo-as-wm --rip-unknown --volmask --o mri/wmparc.mgz --ctxseg aparc+aseg.mgz SUBJECTS_DIR /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer subject ACC019 outvol mri/wmparc.mgz useribbon 0 baseoffset 0 labeling wm labeling hypo-intensities as wm dmaxctx 5.000000 RipUnknown 1 CtxSeg /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/aparc+aseg.mgz Reading lh white surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.white Reading lh pial surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.pial Loading lh annotations from /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/label/lh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Reading rh white surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.white Reading rh pial surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.pial Loading rh annotations from /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/label/rh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Have color table for lh white annotation Have color table for rh white annotation Loading ribbon segmentation from /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/ribbon.mgz Loading filled from /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/filled.mgz Ripping vertices labeled as unkown Ripped 7052 vertices from left hemi Ripped 6962 vertices from right hemi Building hash of lh white Building hash of lh pial Building hash of rh white Building hash of rh pial Loading aseg from /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/aseg.mgz Loading Ctx Seg File /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/aparc+aseg.mgz ASeg Vox2RAS: ----------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; ------------------------- Labeling Slice 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 773042 Used brute-force search on 11 voxels Fixing Parahip LH WM Found 11 clusters 0 k 2.000000 1 k 19.000000 2 k 42.000000 3 k 1.000000 4 k 1.000000 5 k 3.000000 6 k 1.000000 7 k 56.000000 8 k 1151.000000 9 k 1.000000 10 k 3.000000 Fixing Parahip RH WM Found 5 clusters 0 k 3.000000 1 k 1.000000 2 k 1201.000000 3 k 1.000000 4 k 1.000000 Writing output aseg to mri/wmparc.mgz /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019 mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject ACC019 --surf-wm-vol --ctab /usr/local/freesurfer/WMParcStatsLUT.txt --etiv $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $ cwd cmdline mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject ACC019 --surf-wm-vol --ctab /usr/local/freesurfer/WMParcStatsLUT.txt --etiv sysname Linux hostname linux-To-be-filled-by-O-E-M machine x86_64 user linux UseRobust 0 atlas_icv (eTIV) = 1354409 mm^3 (det: 1.438344 ) Loading mri/wmparc.mgz Getting Brain Volume Statistics lhCtxGM: 201599.720 200831.000 diff= 768.7 pctdiff= 0.381 rhCtxGM: 202152.471 201239.000 diff= 913.5 pctdiff= 0.452 lhCtxWM: 187265.351 188874.000 diff=-1608.6 pctdiff=-0.859 rhCtxWM: 185806.008 185068.000 diff= 738.0 pctdiff= 0.397 SubCortGMVol 49842.000 SupraTentVol 853279.549 (851349.000) diff=1930.549 pctdiff=0.226 SupraTentVolNotVent 827844.549 (825914.000) diff=1930.549 pctdiff=0.233 BrainSegVol 947608.000 (945808.000) diff=1800.000 pctdiff=0.190 BrainSegVolNotVent 919322.000 (919862.549) diff=-540.549 pctdiff=-0.059 BrainSegVolNotVent 919322.000 CerebellumVol 93137.000 VentChorVol 25435.000 3rd4th5thCSF 2851.000 CSFVol 1073.000, OptChiasmVol 249.000 MaskVol 1321816.000 Loading mri/norm.mgz Loading mri/norm.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 390 segmentations Computing statistics for each segmentation 0 3000 wm-lh-unknown 0 0.000 1 3001 wm-lh-bankssts 2340 2340.461 2 3002 wm-lh-caudalanteriorcingulate 2729 2729.249 3 3003 wm-lh-caudalmiddlefrontal 5460 5460.278 4 3004 wm-lh-corpuscallosum 0 0.000 5 3005 wm-lh-cuneus 2471 2471.413 6 3006 wm-lh-entorhinal 453 453.042 7 3007 wm-lh-fusiform 5016 5015.512 8 3008 wm-lh-inferiorparietal 6986 6986.205 9 3009 wm-lh-inferiortemporal 5061 5061.198 10 3010 wm-lh-isthmuscingulate 3412 3412.031 11 3011 wm-lh-lateraloccipital 9874 9874.100 12 3012 wm-lh-lateralorbitofrontal 6451 6451.149 13 3013 wm-lh-lingual 4901 4900.842 14 3014 wm-lh-medialorbitofrontal 3215 3215.342 15 3015 wm-lh-middletemporal 4663 4663.284 16 3016 wm-lh-parahippocampal 1311 1311.500 17 3017 wm-lh-paracentral 2899 2899.059 18 3018 wm-lh-parsopercularis 3090 3089.688 19 3019 wm-lh-parsorbitalis 904 903.630 20 3020 wm-lh-parstriangularis 2577 2576.641 21 3021 wm-lh-pericalcarine 2997 2997.410 22 3022 wm-lh-postcentral 6461 6460.696 23 3023 wm-lh-posteriorcingulate 3985 3984.772 24 3024 wm-lh-precentral 11720 11720.489 25 3025 wm-lh-precuneus 8068 8067.595 26 3026 wm-lh-rostralanteriorcingulate 2698 2698.188 27 3027 wm-lh-rostralmiddlefrontal 10319 10318.732 28 3028 wm-lh-superiorfrontal 14157 14156.513 29 3029 wm-lh-superiorparietal 12446 12446.285 30 3030 wm-lh-superiortemporal 6665 6665.035 31 3031 wm-lh-supramarginal 7257 7256.863 32 3032 wm-lh-frontalpole 177 176.975 33 3033 wm-lh-temporalpole 562 562.266 34 3034 wm-lh-transversetemporal 800 799.669 35 3035 wm-lh-insula 8046 8045.966 36 3100 wm-lh-Unknown 0 0.000 37 3101 wm-lh-Corpus_callosum 0 0.000 38 3102 wm-lh-G_and_S_Insula_ONLY_AVERAGE 0 0.000 39 3103 wm-lh-G_cingulate-Isthmus 0 0.000 40 3104 wm-lh-G_cingulate-Main_part 0 0.000 41 3105 wm-lh-G_cuneus 0 0.000 42 3106 wm-lh-G_frontal_inf-Opercular_part 0 0.000 43 3107 wm-lh-G_frontal_inf-Orbital_part 0 0.000 44 3108 wm-lh-G_frontal_inf-Triangular_part 0 0.000 45 3109 wm-lh-G_frontal_middle 0 0.000 46 3110 wm-lh-G_frontal_superior 0 0.000 47 3111 wm-lh-G_frontomarginal 0 0.000 48 3112 wm-lh-G_insular_long 0 0.000 49 3113 wm-lh-G_insular_short 0 0.000 50 3114 wm-lh-G_and_S_occipital_inferior 0 0.000 51 3115 wm-lh-G_occipital_middle 0 0.000 52 3116 wm-lh-G_occipital_superior 0 0.000 53 3117 wm-lh-G_occipit-temp_lat-Or_fusiform 0 0.000 54 3118 wm-lh-G_occipit-temp_med-Lingual_part 0 0.000 55 3119 wm-lh-G_occipit-temp_med-Parahippocampal_part 0 0.000 56 3120 wm-lh-G_orbital 0 0.000 57 3121 wm-lh-G_paracentral 0 0.000 58 3122 wm-lh-G_parietal_inferior-Angular_part 0 0.000 59 3123 wm-lh-G_parietal_inferior-Supramarginal_part 0 0.000 60 3124 wm-lh-G_parietal_superior 0 0.000 61 3125 wm-lh-G_postcentral 0 0.000 62 3126 wm-lh-G_precentral 0 0.000 63 3127 wm-lh-G_precuneus 0 0.000 64 3128 wm-lh-G_rectus 0 0.000 65 3129 wm-lh-G_subcallosal 0 0.000 66 3130 wm-lh-G_subcentral 0 0.000 67 3131 wm-lh-G_temporal_inferior 0 0.000 68 3132 wm-lh-G_temporal_middle 0 0.000 69 3133 wm-lh-G_temp_sup-G_temp_transv_and_interm_S 0 0.000 70 3134 wm-lh-G_temp_sup-Lateral_aspect 0 0.000 71 3135 wm-lh-G_temp_sup-Planum_polare 0 0.000 72 3136 wm-lh-G_temp_sup-Planum_tempolare 0 0.000 73 3137 wm-lh-G_and_S_transverse_frontopolar 0 0.000 74 3138 wm-lh-Lat_Fissure-ant_sgt-ramus_horizontal 0 0.000 75 3139 wm-lh-Lat_Fissure-ant_sgt-ramus_vertical 0 0.000 76 3140 wm-lh-Lat_Fissure-post_sgt 0 0.000 77 3141 wm-lh-Medial_wall 0 0.000 78 3142 wm-lh-Pole_occipital 0 0.000 79 3143 wm-lh-Pole_temporal 0 0.000 80 3144 wm-lh-S_calcarine 0 0.000 81 3145 wm-lh-S_central 0 0.000 82 3146 wm-lh-S_central_insula 0 0.000 83 3147 wm-lh-S_cingulate-Main_part_and_Intracingulate 0 0.000 84 3148 wm-lh-S_cingulate-Marginalis_part 0 0.000 85 3149 wm-lh-S_circular_insula_anterior 0 0.000 86 3150 wm-lh-S_circular_insula_inferior 0 0.000 87 3151 wm-lh-S_circular_insula_superior 0 0.000 88 3152 wm-lh-S_collateral_transverse_ant 0 0.000 89 3153 wm-lh-S_collateral_transverse_post 0 0.000 90 3154 wm-lh-S_frontal_inferior 0 0.000 91 3155 wm-lh-S_frontal_middle 0 0.000 92 3156 wm-lh-S_frontal_superior 0 0.000 93 3157 wm-lh-S_frontomarginal 0 0.000 94 3158 wm-lh-S_intermedius_primus-Jensen 0 0.000 95 3159 wm-lh-S_intraparietal-and_Parietal_transverse 0 0.000 96 3160 wm-lh-S_occipital_anterior 0 0.000 97 3161 wm-lh-S_occipital_middle_and_Lunatus 0 0.000 98 3162 wm-lh-S_occipital_superior_and_transversalis 0 0.000 99 3163 wm-lh-S_occipito-temporal_lateral 0 0.000 100 3164 wm-lh-S_occipito-temporal_medial_and_S_Lingual 0 0.000 101 3165 wm-lh-S_orbital-H_shapped 0 0.000 102 3166 wm-lh-S_orbital_lateral 0 0.000 103 3167 wm-lh-S_orbital_medial-Or_olfactory 0 0.000 104 3168 wm-lh-S_paracentral 0 0.000 105 3169 wm-lh-S_parieto_occipital 0 0.000 106 3170 wm-lh-S_pericallosal 0 0.000 107 3171 wm-lh-S_postcentral 0 0.000 108 3172 wm-lh-S_precentral-Inferior-part 0 0.000 109 3173 wm-lh-S_precentral-Superior-part 0 0.000 110 3174 wm-lh-S_subcentral_ant 0 0.000 111 3175 wm-lh-S_subcentral_post 0 0.000 112 3176 wm-lh-S_suborbital 0 0.000 113 3177 wm-lh-S_subparietal 0 0.000 114 3178 wm-lh-S_supracingulate 0 0.000 115 3179 wm-lh-S_temporal_inferior 0 0.000 116 3180 wm-lh-S_temporal_superior 0 0.000 117 3181 wm-lh-S_temporal_transverse 0 0.000 118 4000 wm-rh-unknown 0 0.000 119 4001 wm-rh-bankssts 2675 2674.798 120 4002 wm-rh-caudalanteriorcingulate 2711 2710.754 121 4003 wm-rh-caudalmiddlefrontal 4837 4837.033 122 4004 wm-rh-corpuscallosum 0 0.000 123 4005 wm-rh-cuneus 2744 2743.812 124 4006 wm-rh-entorhinal 493 493.209 125 4007 wm-rh-fusiform 4859 4858.571 126 4008 wm-rh-inferiorparietal 8649 8649.277 127 4009 wm-rh-inferiortemporal 4915 4914.695 128 4010 wm-rh-isthmuscingulate 3440 3440.245 129 4011 wm-rh-lateraloccipital 7929 7929.158 130 4012 wm-rh-lateralorbitofrontal 5880 5880.084 131 4013 wm-rh-lingual 4822 4822.012 132 4014 wm-rh-medialorbitofrontal 2968 2967.540 133 4015 wm-rh-middletemporal 4902 4902.346 134 4016 wm-rh-parahippocampal 1323 1323.060 135 4017 wm-rh-paracentral 4047 4047.277 136 4018 wm-rh-parsopercularis 2785 2785.314 137 4019 wm-rh-parsorbitalis 1035 1035.057 138 4020 wm-rh-parstriangularis 2627 2626.782 139 4021 wm-rh-pericalcarine 4157 4157.362 140 4022 wm-rh-postcentral 6065 6065.497 141 4023 wm-rh-posteriorcingulate 4104 4103.543 142 4024 wm-rh-precentral 11909 11908.972 143 4025 wm-rh-precuneus 6984 6984.102 144 4026 wm-rh-rostralanteriorcingulate 1870 1869.797 145 4027 wm-rh-rostralmiddlefrontal 11414 11414.376 146 4028 wm-rh-superiorfrontal 13899 13899.398 147 4029 wm-rh-superiorparietal 10257 10257.215 148 4030 wm-rh-superiortemporal 5815 5814.689 149 4031 wm-rh-supramarginal 8211 8210.808 150 4032 wm-rh-frontalpole 241 240.952 151 4033 wm-rh-temporalpole 570 570.049 152 4034 wm-rh-transversetemporal 481 480.751 153 4035 wm-rh-insula 8749 8748.783 154 4100 wm-rh-Unknown 0 0.000 155 4101 wm-rh-Corpus_callosum 0 0.000 156 4102 wm-rh-G_and_S_Insula_ONLY_AVERAGE 0 0.000 157 4103 wm-rh-G_cingulate-Isthmus 0 0.000 158 4104 wm-rh-G_cingulate-Main_part 0 0.000 159 4105 wm-rh-G_cuneus 0 0.000 160 4106 wm-rh-G_frontal_inf-Opercular_part 0 0.000 161 4107 wm-rh-G_frontal_inf-Orbital_part 0 0.000 162 4108 wm-rh-G_frontal_inf-Triangular_part 0 0.000 163 4109 wm-rh-G_frontal_middle 0 0.000 164 4110 wm-rh-G_frontal_superior 0 0.000 165 4111 wm-rh-G_frontomarginal 0 0.000 166 4112 wm-rh-G_insular_long 0 0.000 167 4113 wm-rh-G_insular_short 0 0.000 168 4114 wm-rh-G_and_S_occipital_inferior 0 0.000 169 4115 wm-rh-G_occipital_middle 0 0.000 170 4116 wm-rh-G_occipital_superior 0 0.000 171 4117 wm-rh-G_occipit-temp_lat-Or_fusiform 0 0.000 172 4118 wm-rh-G_occipit-temp_med-Lingual_part 0 0.000 173 4119 wm-rh-G_occipit-temp_med-Parahippocampal_part 0 0.000 174 4120 wm-rh-G_orbital 0 0.000 175 4121 wm-rh-G_paracentral 0 0.000 176 4122 wm-rh-G_parietal_inferior-Angular_part 0 0.000 177 4123 wm-rh-G_parietal_inferior-Supramarginal_part 0 0.000 178 4124 wm-rh-G_parietal_superior 0 0.000 179 4125 wm-rh-G_postcentral 0 0.000 180 4126 wm-rh-G_precentral 0 0.000 181 4127 wm-rh-G_precuneus 0 0.000 182 4128 wm-rh-G_rectus 0 0.000 183 4129 wm-rh-G_subcallosal 0 0.000 184 4130 wm-rh-G_subcentral 0 0.000 185 4131 wm-rh-G_temporal_inferior 0 0.000 186 4132 wm-rh-G_temporal_middle 0 0.000 187 4133 wm-rh-G_temp_sup-G_temp_transv_and_interm_S 0 0.000 188 4134 wm-rh-G_temp_sup-Lateral_aspect 0 0.000 189 4135 wm-rh-G_temp_sup-Planum_polare 0 0.000 190 4136 wm-rh-G_temp_sup-Planum_tempolare 0 0.000 191 4137 wm-rh-G_and_S_transverse_frontopolar 0 0.000 192 4138 wm-rh-Lat_Fissure-ant_sgt-ramus_horizontal 0 0.000 193 4139 wm-rh-Lat_Fissure-ant_sgt-ramus_vertical 0 0.000 194 4140 wm-rh-Lat_Fissure-post_sgt 0 0.000 195 4141 wm-rh-Medial_wall 0 0.000 196 4142 wm-rh-Pole_occipital 0 0.000 197 4143 wm-rh-Pole_temporal 0 0.000 198 4144 wm-rh-S_calcarine 0 0.000 199 4145 wm-rh-S_central 0 0.000 200 4146 wm-rh-S_central_insula 0 0.000 201 4147 wm-rh-S_cingulate-Main_part_and_Intracingulate 0 0.000 202 4148 wm-rh-S_cingulate-Marginalis_part 0 0.000 203 4149 wm-rh-S_circular_insula_anterior 0 0.000 204 4150 wm-rh-S_circular_insula_inferior 0 0.000 205 4151 wm-rh-S_circular_insula_superior 0 0.000 206 4152 wm-rh-S_collateral_transverse_ant 0 0.000 207 4153 wm-rh-S_collateral_transverse_post 0 0.000 208 4154 wm-rh-S_frontal_inferior 0 0.000 209 4155 wm-rh-S_frontal_middle 0 0.000 210 4156 wm-rh-S_frontal_superior 0 0.000 211 4157 wm-rh-S_frontomarginal 0 0.000 212 4158 wm-rh-S_intermedius_primus-Jensen 0 0.000 213 4159 wm-rh-S_intraparietal-and_Parietal_transverse 0 0.000 214 4160 wm-rh-S_occipital_anterior 0 0.000 215 4161 wm-rh-S_occipital_middle_and_Lunatus 0 0.000 216 4162 wm-rh-S_occipital_superior_and_transversalis 0 0.000 217 4163 wm-rh-S_occipito-temporal_lateral 0 0.000 218 4164 wm-rh-S_occipito-temporal_medial_and_S_Lingual 0 0.000 219 4165 wm-rh-S_orbital-H_shapped 0 0.000 220 4166 wm-rh-S_orbital_lateral 0 0.000 221 4167 wm-rh-S_orbital_medial-Or_olfactory 0 0.000 222 4168 wm-rh-S_paracentral 0 0.000 223 4169 wm-rh-S_parieto_occipital 0 0.000 224 4170 wm-rh-S_pericallosal 0 0.000 225 4171 wm-rh-S_postcentral 0 0.000 226 4172 wm-rh-S_precentral-Inferior-part 0 0.000 227 4173 wm-rh-S_precentral-Superior-part 0 0.000 228 4174 wm-rh-S_subcentral_ant 0 0.000 229 4175 wm-rh-S_subcentral_post 0 0.000 230 4176 wm-rh-S_suborbital 0 0.000 231 4177 wm-rh-S_subparietal 0 0.000 232 4178 wm-rh-S_supracingulate 0 0.000 233 4179 wm-rh-S_temporal_inferior 0 0.000 234 4180 wm-rh-S_temporal_superior 0 0.000 235 4181 wm-rh-S_temporal_transverse 0 0.000 236 5001 Left-UnsegmentedWhiteMatter 23053 23052.689 237 5002 Right-UnsegmentedWhiteMatter 24854 24853.910 238 13100 wm_lh_Unknown 0 0.000 239 13101 wm_lh_G_and_S_frontomargin 0 0.000 240 13102 wm_lh_G_and_S_occipital_inf 0 0.000 241 13103 wm_lh_G_and_S_paracentral 0 0.000 242 13104 wm_lh_G_and_S_subcentral 0 0.000 243 13105 wm_lh_G_and_S_transv_frontopol 0 0.000 244 13106 wm_lh_G_and_S_cingul-Ant 0 0.000 245 13107 wm_lh_G_and_S_cingul-Mid-Ant 0 0.000 246 13108 wm_lh_G_and_S_cingul-Mid-Post 0 0.000 247 13109 wm_lh_G_cingul-Post-dorsal 0 0.000 248 13110 wm_lh_G_cingul-Post-ventral 0 0.000 249 13111 wm_lh_G_cuneus 0 0.000 250 13112 wm_lh_G_front_inf-Opercular 0 0.000 251 13113 wm_lh_G_front_inf-Orbital 0 0.000 252 13114 wm_lh_G_front_inf-Triangul 0 0.000 253 13115 wm_lh_G_front_middle 0 0.000 254 13116 wm_lh_G_front_sup 0 0.000 255 13117 wm_lh_G_Ins_lg_and_S_cent_ins 0 0.000 256 13118 wm_lh_G_insular_short 0 0.000 257 13119 wm_lh_G_occipital_middle 0 0.000 258 13120 wm_lh_G_occipital_sup 0 0.000 259 13121 wm_lh_G_oc-temp_lat-fusifor 0 0.000 260 13122 wm_lh_G_oc-temp_med-Lingual 0 0.000 261 13123 wm_lh_G_oc-temp_med-Parahip 0 0.000 262 13124 wm_lh_G_orbital 0 0.000 263 13125 wm_lh_G_pariet_inf-Angular 0 0.000 264 13126 wm_lh_G_pariet_inf-Supramar 0 0.000 265 13127 wm_lh_G_parietal_sup 0 0.000 266 13128 wm_lh_G_postcentral 0 0.000 267 13129 wm_lh_G_precentral 0 0.000 268 13130 wm_lh_G_precuneus 0 0.000 269 13131 wm_lh_G_rectus 0 0.000 270 13132 wm_lh_G_subcallosal 0 0.000 271 13133 wm_lh_G_temp_sup-G_T_transv 0 0.000 272 13134 wm_lh_G_temp_sup-Lateral 0 0.000 273 13135 wm_lh_G_temp_sup-Plan_polar 0 0.000 274 13136 wm_lh_G_temp_sup-Plan_tempo 0 0.000 275 13137 wm_lh_G_temporal_inf 0 0.000 276 13138 wm_lh_G_temporal_middle 0 0.000 277 13139 wm_lh_Lat_Fis-ant-Horizont 0 0.000 278 13140 wm_lh_Lat_Fis-ant-Vertical 0 0.000 279 13141 wm_lh_Lat_Fis-post 0 0.000 280 13142 wm_lh_Medial_wall 0 0.000 281 13143 wm_lh_Pole_occipital 0 0.000 282 13144 wm_lh_Pole_temporal 0 0.000 283 13145 wm_lh_S_calcarine 0 0.000 284 13146 wm_lh_S_central 0 0.000 285 13147 wm_lh_S_cingul-Marginalis 0 0.000 286 13148 wm_lh_S_circular_insula_ant 0 0.000 287 13149 wm_lh_S_circular_insula_inf 0 0.000 288 13150 wm_lh_S_circular_insula_sup 0 0.000 289 13151 wm_lh_S_collat_transv_ant 0 0.000 290 13152 wm_lh_S_collat_transv_post 0 0.000 291 13153 wm_lh_S_front_inf 0 0.000 292 13154 wm_lh_S_front_middle 0 0.000 293 13155 wm_lh_S_front_sup 0 0.000 294 13156 wm_lh_S_interm_prim-Jensen 0 0.000 295 13157 wm_lh_S_intrapariet_and_P_trans 0 0.000 296 13158 wm_lh_S_oc_middle_and_Lunatus 0 0.000 297 13159 wm_lh_S_oc_sup_and_transversal 0 0.000 298 13160 wm_lh_S_occipital_ant 0 0.000 299 13161 wm_lh_S_oc-temp_lat 0 0.000 300 13162 wm_lh_S_oc-temp_med_and_Lingual 0 0.000 301 13163 wm_lh_S_orbital_lateral 0 0.000 302 13164 wm_lh_S_orbital_med-olfact 0 0.000 303 13165 wm_lh_S_orbital-H_Shaped 0 0.000 304 13166 wm_lh_S_parieto_occipital 0 0.000 305 13167 wm_lh_S_pericallosal 0 0.000 306 13168 wm_lh_S_postcentral 0 0.000 307 13169 wm_lh_S_precentral-inf-part 0 0.000 308 13170 wm_lh_S_precentral-sup-part 0 0.000 309 13171 wm_lh_S_suborbital 0 0.000 310 13172 wm_lh_S_subparietal 0 0.000 311 13173 wm_lh_S_temporal_inf 0 0.000 312 13174 wm_lh_S_temporal_sup 0 0.000 313 13175 wm_lh_S_temporal_transverse 0 0.000 314 14100 wm_rh_Unknown 0 0.000 315 14101 wm_rh_G_and_S_frontomargin 0 0.000 316 14102 wm_rh_G_and_S_occipital_inf 0 0.000 317 14103 wm_rh_G_and_S_paracentral 0 0.000 318 14104 wm_rh_G_and_S_subcentral 0 0.000 319 14105 wm_rh_G_and_S_transv_frontopol 0 0.000 320 14106 wm_rh_G_and_S_cingul-Ant 0 0.000 321 14107 wm_rh_G_and_S_cingul-Mid-Ant 0 0.000 322 14108 wm_rh_G_and_S_cingul-Mid-Post 0 0.000 323 14109 wm_rh_G_cingul-Post-dorsal 0 0.000 324 14110 wm_rh_G_cingul-Post-ventral 0 0.000 325 14111 wm_rh_G_cuneus 0 0.000 326 14112 wm_rh_G_front_inf-Opercular 0 0.000 327 14113 wm_rh_G_front_inf-Orbital 0 0.000 328 14114 wm_rh_G_front_inf-Triangul 0 0.000 329 14115 wm_rh_G_front_middle 0 0.000 330 14116 wm_rh_G_front_sup 0 0.000 331 14117 wm_rh_G_Ins_lg_and_S_cent_ins 0 0.000 332 14118 wm_rh_G_insular_short 0 0.000 333 14119 wm_rh_G_occipital_middle 0 0.000 334 14120 wm_rh_G_occipital_sup 0 0.000 335 14121 wm_rh_G_oc-temp_lat-fusifor 0 0.000 336 14122 wm_rh_G_oc-temp_med-Lingual 0 0.000 337 14123 wm_rh_G_oc-temp_med-Parahip 0 0.000 338 14124 wm_rh_G_orbital 0 0.000 339 14125 wm_rh_G_pariet_inf-Angular 0 0.000 340 14126 wm_rh_G_pariet_inf-Supramar 0 0.000 341 14127 wm_rh_G_parietal_sup 0 0.000 342 14128 wm_rh_G_postcentral 0 0.000 343 14129 wm_rh_G_precentral 0 0.000 344 14130 wm_rh_G_precuneus 0 0.000 345 14131 wm_rh_G_rectus 0 0.000 346 14132 wm_rh_G_subcallosal 0 0.000 347 14133 wm_rh_G_temp_sup-G_T_transv 0 0.000 348 14134 wm_rh_G_temp_sup-Lateral 0 0.000 349 14135 wm_rh_G_temp_sup-Plan_polar 0 0.000 350 14136 wm_rh_G_temp_sup-Plan_tempo 0 0.000 351 14137 wm_rh_G_temporal_inf 0 0.000 352 14138 wm_rh_G_temporal_middle 0 0.000 353 14139 wm_rh_Lat_Fis-ant-Horizont 0 0.000 354 14140 wm_rh_Lat_Fis-ant-Vertical 0 0.000 355 14141 wm_rh_Lat_Fis-post 0 0.000 356 14142 wm_rh_Medial_wall 0 0.000 357 14143 wm_rh_Pole_occipital 0 0.000 358 14144 wm_rh_Pole_temporal 0 0.000 359 14145 wm_rh_S_calcarine 0 0.000 360 14146 wm_rh_S_central 0 0.000 361 14147 wm_rh_S_cingul-Marginalis 0 0.000 362 14148 wm_rh_S_circular_insula_ant 0 0.000 363 14149 wm_rh_S_circular_insula_inf 0 0.000 364 14150 wm_rh_S_circular_insula_sup 0 0.000 365 14151 wm_rh_S_collat_transv_ant 0 0.000 366 14152 wm_rh_S_collat_transv_post 0 0.000 367 14153 wm_rh_S_front_inf 0 0.000 368 14154 wm_rh_S_front_middle 0 0.000 369 14155 wm_rh_S_front_sup 0 0.000 370 14156 wm_rh_S_interm_prim-Jensen 0 0.000 371 14157 wm_rh_S_intrapariet_and_P_trans 0 0.000 372 14158 wm_rh_S_oc_middle_and_Lunatus 0 0.000 373 14159 wm_rh_S_oc_sup_and_transversal 0 0.000 374 14160 wm_rh_S_occipital_ant 0 0.000 375 14161 wm_rh_S_oc-temp_lat 0 0.000 376 14162 wm_rh_S_oc-temp_med_and_Lingual 0 0.000 377 14163 wm_rh_S_orbital_lateral 0 0.000 378 14164 wm_rh_S_orbital_med-olfact 0 0.000 379 14165 wm_rh_S_orbital-H_Shaped 0 0.000 380 14166 wm_rh_S_parieto_occipital 0 0.000 381 14167 wm_rh_S_pericallosal 0 0.000 382 14168 wm_rh_S_postcentral 0 0.000 383 14169 wm_rh_S_precentral-inf-part 0 0.000 384 14170 wm_rh_S_precentral-sup-part 0 0.000 385 14171 wm_rh_S_suborbital 0 0.000 386 14172 wm_rh_S_subparietal 0 0.000 387 14173 wm_rh_S_temporal_inf 0 0.000 388 14174 wm_rh_S_temporal_sup 0 0.000 389 14175 wm_rh_S_temporal_transverse 0 0.000 Reporting on 70 segmentations mri_segstats done /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/label #-------------------------------------------- #@# BA Labels lh Fri Apr 5 23:03:22 CEST 2013 mri_label2label --srcsubject fsaverage --srclabel /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/lh.BA1.label --trgsubject ACC019 --trglabel ./lh.BA1.label --hemi lh --regmethod surface srclabel = /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/lh.BA1.label srcsubject = fsaverage trgsubject = ACC019 trglabel = ./lh.BA1.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer FREESURFER_HOME /usr/local/freesurfer Loading source label. Found 4129 points in source label. Starting surface-based mapping Reading source registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.white Reading target registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4129 nlabel points Performing mapping from target back to the source label Number of reverse mapping hits = 205 Checking for and removing duplicates Writing label file ./lh.BA1.label 4334 LabelWrite: saving to ./lh.BA1.label mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/lh.BA2.label --trgsubject ACC019 --trglabel ./lh.BA2.label --hemi lh --regmethod surface srclabel = /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/lh.BA2.label srcsubject = fsaverage trgsubject = ACC019 trglabel = ./lh.BA2.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer FREESURFER_HOME /usr/local/freesurfer Loading source label. Found 7909 points in source label. Starting surface-based mapping Reading source registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.white Reading target registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 7909 nlabel points Performing mapping from target back to the source label Number of reverse mapping hits = 327 Checking for and removing duplicates Writing label file ./lh.BA2.label 8236 LabelWrite: saving to ./lh.BA2.label mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/lh.BA3a.label --trgsubject ACC019 --trglabel ./lh.BA3a.label --hemi lh --regmethod surface srclabel = /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/lh.BA3a.label srcsubject = fsaverage trgsubject = ACC019 trglabel = ./lh.BA3a.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer FREESURFER_HOME /usr/local/freesurfer Loading source label. Found 4077 points in source label. Starting surface-based mapping Reading source registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.white Reading target registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4077 nlabel points Performing mapping from target back to the source label Number of reverse mapping hits = 63 Checking for and removing duplicates Writing label file ./lh.BA3a.label 4140 LabelWrite: saving to ./lh.BA3a.label mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/lh.BA3b.label --trgsubject ACC019 --trglabel ./lh.BA3b.label --hemi lh --regmethod surface srclabel = /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/lh.BA3b.label srcsubject = fsaverage trgsubject = ACC019 trglabel = ./lh.BA3b.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer FREESURFER_HOME /usr/local/freesurfer Loading source label. Found 5983 points in source label. Starting surface-based mapping Reading source registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.white Reading target registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 5983 nlabel points Performing mapping from target back to the source label Number of reverse mapping hits = 141 Checking for and removing duplicates Writing label file ./lh.BA3b.label 6124 LabelWrite: saving to ./lh.BA3b.label mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/lh.BA4a.label --trgsubject ACC019 --trglabel ./lh.BA4a.label --hemi lh --regmethod surface srclabel = /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/lh.BA4a.label srcsubject = fsaverage trgsubject = ACC019 trglabel = ./lh.BA4a.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer FREESURFER_HOME /usr/local/freesurfer Loading source label. Found 5784 points in source label. Starting surface-based mapping Reading source registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.white Reading target registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 5784 nlabel points Performing mapping from target back to the source label Number of reverse mapping hits = 180 Checking for and removing duplicates Writing label file ./lh.BA4a.label 5964 LabelWrite: saving to ./lh.BA4a.label mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/lh.BA4p.label --trgsubject ACC019 --trglabel ./lh.BA4p.label --hemi lh --regmethod surface srclabel = /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/lh.BA4p.label srcsubject = fsaverage trgsubject = ACC019 trglabel = ./lh.BA4p.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer FREESURFER_HOME /usr/local/freesurfer Loading source label. Found 4070 points in source label. Starting surface-based mapping Reading source registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.white Reading target registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4070 nlabel points Performing mapping from target back to the source label Number of reverse mapping hits = 112 Checking for and removing duplicates Writing label file ./lh.BA4p.label 4182 LabelWrite: saving to ./lh.BA4p.label mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/lh.BA6.label --trgsubject ACC019 --trglabel ./lh.BA6.label --hemi lh --regmethod surface srclabel = /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/lh.BA6.label srcsubject = fsaverage trgsubject = ACC019 trglabel = ./lh.BA6.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer FREESURFER_HOME /usr/local/freesurfer Loading source label. Found 13589 points in source label. Starting surface-based mapping Reading source registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.white Reading target registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 13589 nlabel points Performing mapping from target back to the source label Number of reverse mapping hits = 667 Checking for and removing duplicates Writing label file ./lh.BA6.label 14256 LabelWrite: saving to ./lh.BA6.label mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/lh.BA44.label --trgsubject ACC019 --trglabel ./lh.BA44.label --hemi lh --regmethod surface srclabel = /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/lh.BA44.label srcsubject = fsaverage trgsubject = ACC019 trglabel = ./lh.BA44.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer FREESURFER_HOME /usr/local/freesurfer Loading source label. Found 4181 points in source label. Starting surface-based mapping Reading source registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.white Reading target registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4181 nlabel points Performing mapping from target back to the source label Number of reverse mapping hits = 355 Checking for and removing duplicates Writing label file ./lh.BA44.label 4536 LabelWrite: saving to ./lh.BA44.label mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/lh.BA45.label --trgsubject ACC019 --trglabel ./lh.BA45.label --hemi lh --regmethod surface srclabel = /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/lh.BA45.label srcsubject = fsaverage trgsubject = ACC019 trglabel = ./lh.BA45.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer FREESURFER_HOME /usr/local/freesurfer Loading source label. Found 3422 points in source label. Starting surface-based mapping Reading source registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.white Reading target registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3422 nlabel points Performing mapping from target back to the source label Number of reverse mapping hits = 664 Checking for and removing duplicates Writing label file ./lh.BA45.label 4086 LabelWrite: saving to ./lh.BA45.label mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/lh.V1.label --trgsubject ACC019 --trglabel ./lh.V1.label --hemi lh --regmethod surface srclabel = /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/lh.V1.label srcsubject = fsaverage trgsubject = ACC019 trglabel = ./lh.V1.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer FREESURFER_HOME /usr/local/freesurfer Loading source label. Found 4641 points in source label. Starting surface-based mapping Reading source registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.white Reading target registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4641 nlabel points Performing mapping from target back to the source label Number of reverse mapping hits = 1030 Checking for and removing duplicates Writing label file ./lh.V1.label 5671 LabelWrite: saving to ./lh.V1.label mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/lh.V2.label --trgsubject ACC019 --trglabel ./lh.V2.label --hemi lh --regmethod surface srclabel = /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/lh.V2.label srcsubject = fsaverage trgsubject = ACC019 trglabel = ./lh.V2.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer FREESURFER_HOME /usr/local/freesurfer Loading source label. Found 8114 points in source label. Starting surface-based mapping Reading source registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.white Reading target registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 8114 nlabel points Performing mapping from target back to the source label Number of reverse mapping hits = 2667 Checking for and removing duplicates Writing label file ./lh.V2.label 10781 LabelWrite: saving to ./lh.V2.label mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/lh.MT.label --trgsubject ACC019 --trglabel ./lh.MT.label --hemi lh --regmethod surface srclabel = /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/lh.MT.label srcsubject = fsaverage trgsubject = ACC019 trglabel = ./lh.MT.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer FREESURFER_HOME /usr/local/freesurfer Loading source label. Found 2018 points in source label. Starting surface-based mapping Reading source registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.white Reading target registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2018 nlabel points Performing mapping from target back to the source label Number of reverse mapping hits = 538 Checking for and removing duplicates Writing label file ./lh.MT.label 2556 LabelWrite: saving to ./lh.MT.label mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/lh.perirhinal.label --trgsubject ACC019 --trglabel ./lh.perirhinal.label --hemi lh --regmethod surface srclabel = /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/lh.perirhinal.label srcsubject = fsaverage trgsubject = ACC019 trglabel = ./lh.perirhinal.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer FREESURFER_HOME /usr/local/freesurfer Loading source label. Found 1199 points in source label. Starting surface-based mapping Reading source registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.white Reading target registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1199 nlabel points Performing mapping from target back to the source label Number of reverse mapping hits = 48 Checking for and removing duplicates Writing label file ./lh.perirhinal.label 1247 LabelWrite: saving to ./lh.perirhinal.label mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/lh.BA1.thresh.label --trgsubject ACC019 --trglabel ./lh.BA1.thresh.label --hemi lh --regmethod surface srclabel = /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/lh.BA1.thresh.label srcsubject = fsaverage trgsubject = ACC019 trglabel = ./lh.BA1.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer FREESURFER_HOME /usr/local/freesurfer Loading source label. Found 1014 points in source label. Starting surface-based mapping Reading source registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.white Reading target registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1014 nlabel points Performing mapping from target back to the source label Number of reverse mapping hits = 63 Checking for and removing duplicates Writing label file ./lh.BA1.thresh.label 1077 LabelWrite: saving to ./lh.BA1.thresh.label mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/lh.BA2.thresh.label --trgsubject ACC019 --trglabel ./lh.BA2.thresh.label --hemi lh --regmethod surface srclabel = /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/lh.BA2.thresh.label srcsubject = fsaverage trgsubject = ACC019 trglabel = ./lh.BA2.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer FREESURFER_HOME /usr/local/freesurfer Loading source label. Found 2092 points in source label. Starting surface-based mapping Reading source registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.white Reading target registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2092 nlabel points Performing mapping from target back to the source label Number of reverse mapping hits = 136 Checking for and removing duplicates Writing label file ./lh.BA2.thresh.label 2228 LabelWrite: saving to ./lh.BA2.thresh.label mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/lh.BA3a.thresh.label --trgsubject ACC019 --trglabel ./lh.BA3a.thresh.label --hemi lh --regmethod surface srclabel = /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/lh.BA3a.thresh.label srcsubject = fsaverage trgsubject = ACC019 trglabel = ./lh.BA3a.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer FREESURFER_HOME /usr/local/freesurfer Loading source label. Found 1504 points in source label. Starting surface-based mapping Reading source registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.white Reading target registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1504 nlabel points Performing mapping from target back to the source label Number of reverse mapping hits = 14 Checking for and removing duplicates Writing label file ./lh.BA3a.thresh.label 1518 LabelWrite: saving to ./lh.BA3a.thresh.label mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/lh.BA3b.thresh.label --trgsubject ACC019 --trglabel ./lh.BA3b.thresh.label --hemi lh --regmethod surface srclabel = /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/lh.BA3b.thresh.label srcsubject = fsaverage trgsubject = ACC019 trglabel = ./lh.BA3b.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer FREESURFER_HOME /usr/local/freesurfer Loading source label. Found 1996 points in source label. Starting surface-based mapping Reading source registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.white Reading target registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1996 nlabel points Performing mapping from target back to the source label Number of reverse mapping hits = 50 Checking for and removing duplicates Writing label file ./lh.BA3b.thresh.label 2046 LabelWrite: saving to ./lh.BA3b.thresh.label mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/lh.BA4a.thresh.label --trgsubject ACC019 --trglabel ./lh.BA4a.thresh.label --hemi lh --regmethod surface srclabel = /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/lh.BA4a.thresh.label srcsubject = fsaverage trgsubject = ACC019 trglabel = ./lh.BA4a.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer FREESURFER_HOME /usr/local/freesurfer Loading source label. Found 2319 points in source label. Starting surface-based mapping Reading source registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.white Reading target registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2319 nlabel points Performing mapping from target back to the source label Number of reverse mapping hits = 50 Checking for and removing duplicates Writing label file ./lh.BA4a.thresh.label 2369 LabelWrite: saving to ./lh.BA4a.thresh.label mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/lh.BA4p.thresh.label --trgsubject ACC019 --trglabel ./lh.BA4p.thresh.label --hemi lh --regmethod surface srclabel = /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/lh.BA4p.thresh.label srcsubject = fsaverage trgsubject = ACC019 trglabel = ./lh.BA4p.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer FREESURFER_HOME /usr/local/freesurfer Loading source label. Found 1549 points in source label. Starting surface-based mapping Reading source registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.white Reading target registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1549 nlabel points Performing mapping from target back to the source label Number of reverse mapping hits = 33 Checking for and removing duplicates Writing label file ./lh.BA4p.thresh.label 1582 LabelWrite: saving to ./lh.BA4p.thresh.label mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/lh.BA6.thresh.label --trgsubject ACC019 --trglabel ./lh.BA6.thresh.label --hemi lh --regmethod surface srclabel = /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/lh.BA6.thresh.label srcsubject = fsaverage trgsubject = ACC019 trglabel = ./lh.BA6.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer FREESURFER_HOME /usr/local/freesurfer Loading source label. Found 7035 points in source label. Starting surface-based mapping Reading source registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.white Reading target registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 7035 nlabel points Performing mapping from target back to the source label Number of reverse mapping hits = 280 Checking for and removing duplicates Writing label file ./lh.BA6.thresh.label 7315 LabelWrite: saving to ./lh.BA6.thresh.label mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/lh.BA44.thresh.label --trgsubject ACC019 --trglabel ./lh.BA44.thresh.label --hemi lh --regmethod surface srclabel = /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/lh.BA44.thresh.label srcsubject = fsaverage trgsubject = ACC019 trglabel = ./lh.BA44.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer FREESURFER_HOME /usr/local/freesurfer Loading source label. Found 1912 points in source label. Starting surface-based mapping Reading source registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.white Reading target registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1912 nlabel points Performing mapping from target back to the source label Number of reverse mapping hits = 96 Checking for and removing duplicates Writing label file ./lh.BA44.thresh.label 2008 LabelWrite: saving to ./lh.BA44.thresh.label mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/lh.BA45.thresh.label --trgsubject ACC019 --trglabel ./lh.BA45.thresh.label --hemi lh --regmethod surface srclabel = /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/lh.BA45.thresh.label srcsubject = fsaverage trgsubject = ACC019 trglabel = ./lh.BA45.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer FREESURFER_HOME /usr/local/freesurfer Loading source label. Found 1151 points in source label. Starting surface-based mapping Reading source registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.white Reading target registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1151 nlabel points Performing mapping from target back to the source label Number of reverse mapping hits = 318 Checking for and removing duplicates Writing label file ./lh.BA45.thresh.label 1469 LabelWrite: saving to ./lh.BA45.thresh.label mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/lh.V1.thresh.label --trgsubject ACC019 --trglabel ./lh.V1.thresh.label --hemi lh --regmethod surface srclabel = /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/lh.V1.thresh.label srcsubject = fsaverage trgsubject = ACC019 trglabel = ./lh.V1.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer FREESURFER_HOME /usr/local/freesurfer Loading source label. Found 3405 points in source label. Starting surface-based mapping Reading source registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.white Reading target registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3405 nlabel points Performing mapping from target back to the source label Number of reverse mapping hits = 626 Checking for and removing duplicates Writing label file ./lh.V1.thresh.label 4031 LabelWrite: saving to ./lh.V1.thresh.label mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/lh.V2.thresh.label --trgsubject ACC019 --trglabel ./lh.V2.thresh.label --hemi lh --regmethod surface srclabel = /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/lh.V2.thresh.label srcsubject = fsaverage trgsubject = ACC019 trglabel = ./lh.V2.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer FREESURFER_HOME /usr/local/freesurfer Loading source label. Found 3334 points in source label. Starting surface-based mapping Reading source registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.white Reading target registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3334 nlabel points Performing mapping from target back to the source label Number of reverse mapping hits = 1262 Checking for and removing duplicates Writing label file ./lh.V2.thresh.label 4596 LabelWrite: saving to ./lh.V2.thresh.label mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/lh.MT.thresh.label --trgsubject ACC019 --trglabel ./lh.MT.thresh.label --hemi lh --regmethod surface srclabel = /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/lh.MT.thresh.label srcsubject = fsaverage trgsubject = ACC019 trglabel = ./lh.MT.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer FREESURFER_HOME /usr/local/freesurfer Loading source label. Found 513 points in source label. Starting surface-based mapping Reading source registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.white Reading target registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 513 nlabel points Performing mapping from target back to the source label Number of reverse mapping hits = 143 Checking for and removing duplicates Writing label file ./lh.MT.thresh.label 656 LabelWrite: saving to ./lh.MT.thresh.label mri_label2label: Done mris_label2annot --s ACC019 --hemi lh --ctab /usr/local/freesurfer/average/colortable_BA.txt --l lh.BA1.label --l lh.BA2.label --l lh.BA3a.label --l lh.BA3b.label --l lh.BA4a.label --l lh.BA4p.label --l lh.BA6.label --l lh.BA44.label --l lh.BA45.label --l lh.V1.label --l lh.V2.label --l lh.MT.label --l lh.perirhinal.label --a BA --maxstatwinner --noverbose Reading ctab /usr/local/freesurfer/average/colortable_BA.txt Number of ctab entries 14 $Id: mris_label2annot.c,v 1.17 2011/03/02 00:04:32 nicks Exp $ cwd /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/label cmdline mris_label2annot --s ACC019 --hemi lh --ctab /usr/local/freesurfer/average/colortable_BA.txt --l lh.BA1.label --l lh.BA2.label --l lh.BA3a.label --l lh.BA3b.label --l lh.BA4a.label --l lh.BA4p.label --l lh.BA6.label --l lh.BA44.label --l lh.BA45.label --l lh.V1.label --l lh.V2.label --l lh.MT.label --l lh.perirhinal.label --a BA --maxstatwinner --noverbose sysname Linux hostname linux-To-be-filled-by-O-E-M machine x86_64 user linux subject ACC019 hemi lh SUBJECTS_DIR /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer ColorTable /usr/local/freesurfer/average/colortable_BA.txt AnnotName BA nlables 13 LabelThresh 0 0.000000 Loading /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.orig 1 1530880 BA1 2 16749699 BA2 3 16711680 BA3a 4 3368703 BA3b 5 1376196 BA4a 6 13382655 BA4p 7 10036737 BA6 8 2490521 BA44 9 39283 BA45 10 3993 V1 11 8508928 V2 12 10027163 MT 13 16422433 perirhinal Mapping unhit to unknown Found 79255 unhit vertices Writing annot to /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/label/lh.BA.annot mris_label2annot --s ACC019 --hemi lh --ctab /usr/local/freesurfer/average/colortable_BA.txt --l lh.BA1.thresh.label --l lh.BA2.thresh.label --l lh.BA3a.thresh.label --l lh.BA3b.thresh.label --l lh.BA4a.thresh.label --l lh.BA4p.thresh.label --l lh.BA6.thresh.label --l lh.BA44.thresh.label --l lh.BA45.thresh.label --l lh.V1.thresh.label --l lh.V2.thresh.label --l lh.MT.thresh.label --a BA.thresh --maxstatwinner --noverbose Reading ctab /usr/local/freesurfer/average/colortable_BA.txt Number of ctab entries 14 $Id: mris_label2annot.c,v 1.17 2011/03/02 00:04:32 nicks Exp $ cwd /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/label cmdline mris_label2annot --s ACC019 --hemi lh --ctab /usr/local/freesurfer/average/colortable_BA.txt --l lh.BA1.thresh.label --l lh.BA2.thresh.label --l lh.BA3a.thresh.label --l lh.BA3b.thresh.label --l lh.BA4a.thresh.label --l lh.BA4p.thresh.label --l lh.BA6.thresh.label --l lh.BA44.thresh.label --l lh.BA45.thresh.label --l lh.V1.thresh.label --l lh.V2.thresh.label --l lh.MT.thresh.label --a BA.thresh --maxstatwinner --noverbose sysname Linux hostname linux-To-be-filled-by-O-E-M machine x86_64 user linux subject ACC019 hemi lh SUBJECTS_DIR /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer ColorTable /usr/local/freesurfer/average/colortable_BA.txt AnnotName BA.thresh nlables 12 LabelThresh 0 0.000000 Loading /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.orig 1 1530880 BA1 2 16749699 BA2 3 16711680 BA3a 4 3368703 BA3b 5 1376196 BA4a 6 13382655 BA4p 7 10036737 BA6 8 2490521 BA44 9 39283 BA45 10 3993 V1 11 8508928 V2 12 10027163 MT Mapping unhit to unknown Found 95117 unhit vertices Writing annot to /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/label/lh.BA.thresh.annot mris_anatomical_stats -mgz -f ../stats/lh.BA.stats -b -a ./lh.BA.annot -c ./BA.ctab ACC019 lh white computing statistics for each annotation in ./lh.BA.annot. reading volume /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/wm.mgz... reading input surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.white... reading input pial surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.pial... reading input white surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.white... INFO: assuming MGZ format for volumes. reading colortable from annotation file... colortable with 14 entries read (originally /usr/local/freesurfer/average/colortable_BA.txt) Saving annotation colortable ./BA.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name 1034 507 1396 2.087 0.445 0.133 0.057 19 2.8 BA1 3566 2189 5190 2.303 0.503 0.121 0.036 38 5.2 BA2 846 592 824 1.787 0.463 0.136 0.036 7 1.3 BA3a 2028 1266 2598 1.798 0.646 0.130 0.042 28 3.5 BA3b 1301 629 2254 2.877 0.598 0.109 0.043 59 2.4 BA4a 1087 701 1903 2.797 0.587 0.112 0.116 21 1.6 BA4p 7733 4640 16575 2.978 0.572 0.139 0.391 899 22.0 BA6 2051 1300 3942 2.812 0.453 0.124 0.039 24 3.4 BA44 3069 1819 5476 2.655 0.529 0.132 0.051 46 6.6 BA45 2980 1907 3758 1.934 0.557 0.138 0.053 41 7.0 V1 8112 4961 11781 2.195 0.633 0.153 0.062 145 20.2 V2 2139 1263 3856 2.816 0.595 0.142 0.062 33 6.2 MT 696 476 2290 3.639 1.005 0.121 0.035 7 1.2 perirhinal mris_anatomical_stats -mgz -f ../stats/lh.BA.thresh.stats -b -a ./lh.BA.thresh.annot -c ./BA.thresh.ctab ACC019 lh white computing statistics for each annotation in ./lh.BA.thresh.annot. reading volume /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/wm.mgz... reading input surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.white... reading input pial surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.pial... reading input white surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.white... INFO: assuming MGZ format for volumes. reading colortable from annotation file... colortable with 14 entries read (originally /usr/local/freesurfer/average/colortable_BA.txt) Saving annotation colortable ./BA.thresh.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name 644 275 820 2.141 0.408 0.142 0.068 15 2.1 BA1 1561 898 2207 2.221 0.512 0.104 0.031 13 2.0 BA2 704 505 676 1.769 0.457 0.131 0.031 5 0.9 BA3a 1243 811 1238 1.451 0.344 0.106 0.031 10 1.6 BA3b 1283 647 2148 2.846 0.639 0.106 0.040 52 2.2 BA4a 892 589 1525 2.727 0.590 0.116 0.036 11 1.5 BA4p 4076 2328 8422 2.953 0.595 0.138 0.688 845 12.8 BA6 1238 766 2419 2.802 0.447 0.134 0.049 20 2.6 BA44 1280 725 2382 2.658 0.538 0.133 0.059 23 3.1 BA45 3208 2009 4013 1.931 0.547 0.136 0.052 48 7.3 V1 4058 2550 5781 2.084 0.607 0.160 0.059 64 10.2 V2 593 365 957 2.631 0.614 0.139 0.044 8 1.2 MT #-------------------------------------------- #@# BA Labels rh Fri Apr 5 23:07:02 CEST 2013 mri_label2label --srcsubject fsaverage --srclabel /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/rh.BA1.label --trgsubject ACC019 --trglabel ./rh.BA1.label --hemi rh --regmethod surface srclabel = /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/rh.BA1.label srcsubject = fsaverage trgsubject = ACC019 trglabel = ./rh.BA1.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer FREESURFER_HOME /usr/local/freesurfer Loading source label. Found 3962 points in source label. Starting surface-based mapping Reading source registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.white Reading target registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3962 nlabel points Performing mapping from target back to the source label Number of reverse mapping hits = 243 Checking for and removing duplicates Writing label file ./rh.BA1.label 4205 LabelWrite: saving to ./rh.BA1.label mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/rh.BA2.label --trgsubject ACC019 --trglabel ./rh.BA2.label --hemi rh --regmethod surface srclabel = /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/rh.BA2.label srcsubject = fsaverage trgsubject = ACC019 trglabel = ./rh.BA2.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer FREESURFER_HOME /usr/local/freesurfer Loading source label. Found 6687 points in source label. Starting surface-based mapping Reading source registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.white Reading target registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 6687 nlabel points Performing mapping from target back to the source label Number of reverse mapping hits = 302 Checking for and removing duplicates Writing label file ./rh.BA2.label 6989 LabelWrite: saving to ./rh.BA2.label mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/rh.BA3a.label --trgsubject ACC019 --trglabel ./rh.BA3a.label --hemi rh --regmethod surface srclabel = /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/rh.BA3a.label srcsubject = fsaverage trgsubject = ACC019 trglabel = ./rh.BA3a.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer FREESURFER_HOME /usr/local/freesurfer Loading source label. Found 3980 points in source label. Starting surface-based mapping Reading source registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.white Reading target registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3980 nlabel points Performing mapping from target back to the source label Number of reverse mapping hits = 80 Checking for and removing duplicates Writing label file ./rh.BA3a.label 4060 LabelWrite: saving to ./rh.BA3a.label mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/rh.BA3b.label --trgsubject ACC019 --trglabel ./rh.BA3b.label --hemi rh --regmethod surface srclabel = /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/rh.BA3b.label srcsubject = fsaverage trgsubject = ACC019 trglabel = ./rh.BA3b.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer FREESURFER_HOME /usr/local/freesurfer Loading source label. Found 4522 points in source label. Starting surface-based mapping Reading source registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.white Reading target registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4522 nlabel points Performing mapping from target back to the source label Number of reverse mapping hits = 144 Checking for and removing duplicates Writing label file ./rh.BA3b.label 4666 LabelWrite: saving to ./rh.BA3b.label mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/rh.BA4a.label --trgsubject ACC019 --trglabel ./rh.BA4a.label --hemi rh --regmethod surface srclabel = /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/rh.BA4a.label srcsubject = fsaverage trgsubject = ACC019 trglabel = ./rh.BA4a.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer FREESURFER_HOME /usr/local/freesurfer Loading source label. Found 5747 points in source label. Starting surface-based mapping Reading source registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.white Reading target registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 5747 nlabel points Performing mapping from target back to the source label Number of reverse mapping hits = 263 Checking for and removing duplicates Writing label file ./rh.BA4a.label 6010 LabelWrite: saving to ./rh.BA4a.label mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/rh.BA4p.label --trgsubject ACC019 --trglabel ./rh.BA4p.label --hemi rh --regmethod surface srclabel = /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/rh.BA4p.label srcsubject = fsaverage trgsubject = ACC019 trglabel = ./rh.BA4p.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer FREESURFER_HOME /usr/local/freesurfer Loading source label. Found 4473 points in source label. Starting surface-based mapping Reading source registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.white Reading target registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4473 nlabel points Performing mapping from target back to the source label Number of reverse mapping hits = 89 Checking for and removing duplicates Writing label file ./rh.BA4p.label 4562 LabelWrite: saving to ./rh.BA4p.label mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/rh.BA6.label --trgsubject ACC019 --trglabel ./rh.BA6.label --hemi rh --regmethod surface srclabel = /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/rh.BA6.label srcsubject = fsaverage trgsubject = ACC019 trglabel = ./rh.BA6.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer FREESURFER_HOME /usr/local/freesurfer Loading source label. Found 12256 points in source label. Starting surface-based mapping Reading source registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.white Reading target registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 12256 nlabel points Performing mapping from target back to the source label Number of reverse mapping hits = 593 Checking for and removing duplicates Writing label file ./rh.BA6.label 12849 LabelWrite: saving to ./rh.BA6.label mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/rh.BA44.label --trgsubject ACC019 --trglabel ./rh.BA44.label --hemi rh --regmethod surface srclabel = /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/rh.BA44.label srcsubject = fsaverage trgsubject = ACC019 trglabel = ./rh.BA44.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer FREESURFER_HOME /usr/local/freesurfer Loading source label. Found 6912 points in source label. Starting surface-based mapping Reading source registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.white Reading target registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 6912 nlabel points Performing mapping from target back to the source label Number of reverse mapping hits = 493 Checking for and removing duplicates Writing label file ./rh.BA44.label 7405 LabelWrite: saving to ./rh.BA44.label mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/rh.BA45.label --trgsubject ACC019 --trglabel ./rh.BA45.label --hemi rh --regmethod surface srclabel = /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/rh.BA45.label srcsubject = fsaverage trgsubject = ACC019 trglabel = ./rh.BA45.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer FREESURFER_HOME /usr/local/freesurfer Loading source label. Found 5355 points in source label. Starting surface-based mapping Reading source registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.white Reading target registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 5355 nlabel points Performing mapping from target back to the source label Number of reverse mapping hits = 475 Checking for and removing duplicates Writing label file ./rh.BA45.label 5830 LabelWrite: saving to ./rh.BA45.label mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/rh.V1.label --trgsubject ACC019 --trglabel ./rh.V1.label --hemi rh --regmethod surface srclabel = /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/rh.V1.label srcsubject = fsaverage trgsubject = ACC019 trglabel = ./rh.V1.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer FREESURFER_HOME /usr/local/freesurfer Loading source label. Found 4727 points in source label. Starting surface-based mapping Reading source registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.white Reading target registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4727 nlabel points Performing mapping from target back to the source label Number of reverse mapping hits = 1818 Checking for and removing duplicates Writing label file ./rh.V1.label 6545 LabelWrite: saving to ./rh.V1.label mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/rh.V2.label --trgsubject ACC019 --trglabel ./rh.V2.label --hemi rh --regmethod surface srclabel = /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/rh.V2.label srcsubject = fsaverage trgsubject = ACC019 trglabel = ./rh.V2.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer FREESURFER_HOME /usr/local/freesurfer Loading source label. Found 8016 points in source label. Starting surface-based mapping Reading source registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.white Reading target registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 8016 nlabel points Performing mapping from target back to the source label Number of reverse mapping hits = 2527 Checking for and removing duplicates Writing label file ./rh.V2.label 10543 LabelWrite: saving to ./rh.V2.label mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/rh.MT.label --trgsubject ACC019 --trglabel ./rh.MT.label --hemi rh --regmethod surface srclabel = /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/rh.MT.label srcsubject = fsaverage trgsubject = ACC019 trglabel = ./rh.MT.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer FREESURFER_HOME /usr/local/freesurfer Loading source label. Found 1932 points in source label. Starting surface-based mapping Reading source registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.white Reading target registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1932 nlabel points Performing mapping from target back to the source label Number of reverse mapping hits = 343 Checking for and removing duplicates Writing label file ./rh.MT.label 2275 LabelWrite: saving to ./rh.MT.label mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/rh.perirhinal.label --trgsubject ACC019 --trglabel ./rh.perirhinal.label --hemi rh --regmethod surface srclabel = /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/rh.perirhinal.label srcsubject = fsaverage trgsubject = ACC019 trglabel = ./rh.perirhinal.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer FREESURFER_HOME /usr/local/freesurfer Loading source label. Found 752 points in source label. Starting surface-based mapping Reading source registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.white Reading target registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 752 nlabel points Performing mapping from target back to the source label Number of reverse mapping hits = 19 Checking for and removing duplicates Writing label file ./rh.perirhinal.label 771 LabelWrite: saving to ./rh.perirhinal.label mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/rh.BA1.thresh.label --trgsubject ACC019 --trglabel ./rh.BA1.thresh.label --hemi rh --regmethod surface srclabel = /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/rh.BA1.thresh.label srcsubject = fsaverage trgsubject = ACC019 trglabel = ./rh.BA1.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer FREESURFER_HOME /usr/local/freesurfer Loading source label. Found 876 points in source label. Starting surface-based mapping Reading source registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.white Reading target registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 876 nlabel points Performing mapping from target back to the source label Number of reverse mapping hits = 56 Checking for and removing duplicates Writing label file ./rh.BA1.thresh.label 932 LabelWrite: saving to ./rh.BA1.thresh.label mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/rh.BA2.thresh.label --trgsubject ACC019 --trglabel ./rh.BA2.thresh.label --hemi rh --regmethod surface srclabel = /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/rh.BA2.thresh.label srcsubject = fsaverage trgsubject = ACC019 trglabel = ./rh.BA2.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer FREESURFER_HOME /usr/local/freesurfer Loading source label. Found 2688 points in source label. Starting surface-based mapping Reading source registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.white Reading target registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2688 nlabel points Performing mapping from target back to the source label Number of reverse mapping hits = 171 Checking for and removing duplicates Writing label file ./rh.BA2.thresh.label 2859 LabelWrite: saving to ./rh.BA2.thresh.label mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/rh.BA3a.thresh.label --trgsubject ACC019 --trglabel ./rh.BA3a.thresh.label --hemi rh --regmethod surface srclabel = /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/rh.BA3a.thresh.label srcsubject = fsaverage trgsubject = ACC019 trglabel = ./rh.BA3a.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer FREESURFER_HOME /usr/local/freesurfer Loading source label. Found 1698 points in source label. Starting surface-based mapping Reading source registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.white Reading target registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1698 nlabel points Performing mapping from target back to the source label Number of reverse mapping hits = 24 Checking for and removing duplicates Writing label file ./rh.BA3a.thresh.label 1722 LabelWrite: saving to ./rh.BA3a.thresh.label mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/rh.BA3b.thresh.label --trgsubject ACC019 --trglabel ./rh.BA3b.thresh.label --hemi rh --regmethod surface srclabel = /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/rh.BA3b.thresh.label srcsubject = fsaverage trgsubject = ACC019 trglabel = ./rh.BA3b.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer FREESURFER_HOME /usr/local/freesurfer Loading source label. Found 2183 points in source label. Starting surface-based mapping Reading source registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.white Reading target registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2183 nlabel points Performing mapping from target back to the source label Number of reverse mapping hits = 65 Checking for and removing duplicates Writing label file ./rh.BA3b.thresh.label 2248 LabelWrite: saving to ./rh.BA3b.thresh.label mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/rh.BA4a.thresh.label --trgsubject ACC019 --trglabel ./rh.BA4a.thresh.label --hemi rh --regmethod surface srclabel = /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/rh.BA4a.thresh.label srcsubject = fsaverage trgsubject = ACC019 trglabel = ./rh.BA4a.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer FREESURFER_HOME /usr/local/freesurfer Loading source label. Found 1388 points in source label. Starting surface-based mapping Reading source registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.white Reading target registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1388 nlabel points Performing mapping from target back to the source label Number of reverse mapping hits = 80 Checking for and removing duplicates Writing label file ./rh.BA4a.thresh.label 1468 LabelWrite: saving to ./rh.BA4a.thresh.label mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/rh.BA4p.thresh.label --trgsubject ACC019 --trglabel ./rh.BA4p.thresh.label --hemi rh --regmethod surface srclabel = /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/rh.BA4p.thresh.label srcsubject = fsaverage trgsubject = ACC019 trglabel = ./rh.BA4p.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer FREESURFER_HOME /usr/local/freesurfer Loading source label. Found 1489 points in source label. Starting surface-based mapping Reading source registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.white Reading target registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1489 nlabel points Performing mapping from target back to the source label Number of reverse mapping hits = 28 Checking for and removing duplicates Writing label file ./rh.BA4p.thresh.label 1517 LabelWrite: saving to ./rh.BA4p.thresh.label mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/rh.BA6.thresh.label --trgsubject ACC019 --trglabel ./rh.BA6.thresh.label --hemi rh --regmethod surface srclabel = /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/rh.BA6.thresh.label srcsubject = fsaverage trgsubject = ACC019 trglabel = ./rh.BA6.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer FREESURFER_HOME /usr/local/freesurfer Loading source label. Found 6959 points in source label. Starting surface-based mapping Reading source registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.white Reading target registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 6959 nlabel points Performing mapping from target back to the source label Number of reverse mapping hits = 276 Checking for and removing duplicates Writing label file ./rh.BA6.thresh.label 7235 LabelWrite: saving to ./rh.BA6.thresh.label mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/rh.BA44.thresh.label --trgsubject ACC019 --trglabel ./rh.BA44.thresh.label --hemi rh --regmethod surface srclabel = /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/rh.BA44.thresh.label srcsubject = fsaverage trgsubject = ACC019 trglabel = ./rh.BA44.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer FREESURFER_HOME /usr/local/freesurfer Loading source label. Found 1012 points in source label. Starting surface-based mapping Reading source registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.white Reading target registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1012 nlabel points Performing mapping from target back to the source label Number of reverse mapping hits = 64 Checking for and removing duplicates Writing label file ./rh.BA44.thresh.label 1076 LabelWrite: saving to ./rh.BA44.thresh.label mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/rh.BA45.thresh.label --trgsubject ACC019 --trglabel ./rh.BA45.thresh.label --hemi rh --regmethod surface srclabel = /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/rh.BA45.thresh.label srcsubject = fsaverage trgsubject = ACC019 trglabel = ./rh.BA45.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer FREESURFER_HOME /usr/local/freesurfer Loading source label. Found 1178 points in source label. Starting surface-based mapping Reading source registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.white Reading target registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1178 nlabel points Performing mapping from target back to the source label Number of reverse mapping hits = 134 Checking for and removing duplicates Writing label file ./rh.BA45.thresh.label 1312 LabelWrite: saving to ./rh.BA45.thresh.label mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/rh.V1.thresh.label --trgsubject ACC019 --trglabel ./rh.V1.thresh.label --hemi rh --regmethod surface srclabel = /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/rh.V1.thresh.label srcsubject = fsaverage trgsubject = ACC019 trglabel = ./rh.V1.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer FREESURFER_HOME /usr/local/freesurfer Loading source label. Found 3232 points in source label. Starting surface-based mapping Reading source registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.white Reading target registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3232 nlabel points Performing mapping from target back to the source label Number of reverse mapping hits = 1245 Checking for and removing duplicates Writing label file ./rh.V1.thresh.label 4477 LabelWrite: saving to ./rh.V1.thresh.label mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/rh.V2.thresh.label --trgsubject ACC019 --trglabel ./rh.V2.thresh.label --hemi rh --regmethod surface srclabel = /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/rh.V2.thresh.label srcsubject = fsaverage trgsubject = ACC019 trglabel = ./rh.V2.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer FREESURFER_HOME /usr/local/freesurfer Loading source label. Found 3437 points in source label. Starting surface-based mapping Reading source registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.white Reading target registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3437 nlabel points Performing mapping from target back to the source label Number of reverse mapping hits = 1379 Checking for and removing duplicates Writing label file ./rh.V2.thresh.label 4816 LabelWrite: saving to ./rh.V2.thresh.label mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/rh.MT.thresh.label --trgsubject ACC019 --trglabel ./rh.MT.thresh.label --hemi rh --regmethod surface srclabel = /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/label/rh.MT.thresh.label srcsubject = fsaverage trgsubject = ACC019 trglabel = ./rh.MT.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer FREESURFER_HOME /usr/local/freesurfer Loading source label. Found 268 points in source label. Starting surface-based mapping Reading source registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.white Reading target registration /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 268 nlabel points Performing mapping from target back to the source label Number of reverse mapping hits = 46 Checking for and removing duplicates Writing label file ./rh.MT.thresh.label 314 LabelWrite: saving to ./rh.MT.thresh.label mri_label2label: Done mris_label2annot --s ACC019 --hemi rh --ctab /usr/local/freesurfer/average/colortable_BA.txt --l rh.BA1.label --l rh.BA2.label --l rh.BA3a.label --l rh.BA3b.label --l rh.BA4a.label --l rh.BA4p.label --l rh.BA6.label --l rh.BA44.label --l rh.BA45.label --l rh.V1.label --l rh.V2.label --l rh.MT.label --l rh.perirhinal.label --a BA --maxstatwinner --noverbose Reading ctab /usr/local/freesurfer/average/colortable_BA.txt Number of ctab entries 14 $Id: mris_label2annot.c,v 1.17 2011/03/02 00:04:32 nicks Exp $ cwd /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/label cmdline mris_label2annot --s ACC019 --hemi rh --ctab /usr/local/freesurfer/average/colortable_BA.txt --l rh.BA1.label --l rh.BA2.label --l rh.BA3a.label --l rh.BA3b.label --l rh.BA4a.label --l rh.BA4p.label --l rh.BA6.label --l rh.BA44.label --l rh.BA45.label --l rh.V1.label --l rh.V2.label --l rh.MT.label --l rh.perirhinal.label --a BA --maxstatwinner --noverbose sysname Linux hostname linux-To-be-filled-by-O-E-M machine x86_64 user linux subject ACC019 hemi rh SUBJECTS_DIR /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer ColorTable /usr/local/freesurfer/average/colortable_BA.txt AnnotName BA nlables 13 LabelThresh 0 0.000000 Loading /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.orig 1 1530880 BA1 2 16749699 BA2 3 16711680 BA3a 4 3368703 BA3b 5 1376196 BA4a 6 13382655 BA4p 7 10036737 BA6 8 2490521 BA44 9 39283 BA45 10 3993 V1 11 8508928 V2 12 10027163 MT 13 16422433 perirhinal Mapping unhit to unknown Found 79707 unhit vertices Writing annot to /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/label/rh.BA.annot mris_label2annot --s ACC019 --hemi rh --ctab /usr/local/freesurfer/average/colortable_BA.txt --l rh.BA1.thresh.label --l rh.BA2.thresh.label --l rh.BA3a.thresh.label --l rh.BA3b.thresh.label --l rh.BA4a.thresh.label --l rh.BA4p.thresh.label --l rh.BA6.thresh.label --l rh.BA44.thresh.label --l rh.BA45.thresh.label --l rh.V1.thresh.label --l rh.V2.thresh.label --l rh.MT.thresh.label --a BA.thresh --maxstatwinner --noverbose Reading ctab /usr/local/freesurfer/average/colortable_BA.txt Number of ctab entries 14 $Id: mris_label2annot.c,v 1.17 2011/03/02 00:04:32 nicks Exp $ cwd /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/label cmdline mris_label2annot --s ACC019 --hemi rh --ctab /usr/local/freesurfer/average/colortable_BA.txt --l rh.BA1.thresh.label --l rh.BA2.thresh.label --l rh.BA3a.thresh.label --l rh.BA3b.thresh.label --l rh.BA4a.thresh.label --l rh.BA4p.thresh.label --l rh.BA6.thresh.label --l rh.BA44.thresh.label --l rh.BA45.thresh.label --l rh.V1.thresh.label --l rh.V2.thresh.label --l rh.MT.thresh.label --a BA.thresh --maxstatwinner --noverbose sysname Linux hostname linux-To-be-filled-by-O-E-M machine x86_64 user linux subject ACC019 hemi rh SUBJECTS_DIR /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer ColorTable /usr/local/freesurfer/average/colortable_BA.txt AnnotName BA.thresh nlables 12 LabelThresh 0 0.000000 Loading /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.orig 1 1530880 BA1 2 16749699 BA2 3 16711680 BA3a 4 3368703 BA3b 5 1376196 BA4a 6 13382655 BA4p 7 10036737 BA6 8 2490521 BA44 9 39283 BA45 10 3993 V1 11 8508928 V2 12 10027163 MT Mapping unhit to unknown Found 95003 unhit vertices Writing annot to /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/label/rh.BA.thresh.annot mris_anatomical_stats -mgz -f ../stats/rh.BA.stats -b -a ./rh.BA.annot -c ./BA.ctab ACC019 rh white computing statistics for each annotation in ./rh.BA.annot. reading volume /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/wm.mgz... reading input surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.white... reading input pial surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.pial... reading input white surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.white... INFO: assuming MGZ format for volumes. reading colortable from annotation file... colortable with 14 entries read (originally /usr/local/freesurfer/average/colortable_BA.txt) Saving annotation colortable ./BA.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name 886 388 1247 2.330 0.460 0.120 0.046 15 1.7 BA1 3067 1885 4431 2.251 0.491 0.110 0.028 26 3.5 BA2 883 658 887 1.690 0.365 0.137 0.036 7 1.4 BA3a 1656 986 1948 1.697 0.505 0.107 0.031 16 2.3 BA3b 1441 692 2421 2.826 0.455 0.095 0.052 17 4.2 BA4a 1051 673 1645 2.545 0.441 0.100 0.026 7 1.3 BA4p 6559 3888 13688 2.937 0.624 0.140 0.109 674 19.4 BA6 3165 2055 5714 2.706 0.445 0.134 0.044 41 6.0 BA44 3307 1945 6179 2.731 0.541 0.131 0.052 47 6.7 BA45 4147 2594 5674 2.059 0.644 0.148 0.062 90 10.4 V1 7676 4513 11252 2.344 0.590 0.148 0.056 127 17.7 V2 1835 1145 3284 2.923 0.515 0.149 0.058 30 4.4 MT 467 330 1779 3.816 0.810 0.125 0.032 5 0.6 perirhinal mris_anatomical_stats -mgz -f ../stats/rh.BA.thresh.stats -b -a ./rh.BA.thresh.annot -c ./BA.thresh.ctab ACC019 rh white computing statistics for each annotation in ./rh.BA.thresh.annot. reading volume /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/wm.mgz... reading input surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.white... reading input pial surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.pial... reading input white surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.white... INFO: assuming MGZ format for volumes. reading colortable from annotation file... colortable with 14 entries read (originally /usr/local/freesurfer/average/colortable_BA.txt) Saving annotation colortable ./BA.thresh.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name 603 257 813 2.241 0.412 0.128 0.046 9 1.2 BA1 1908 1112 2722 2.247 0.500 0.100 0.027 14 2.2 BA2 763 587 737 1.670 0.343 0.143 0.037 6 1.2 BA3a 1353 847 1400 1.535 0.351 0.092 0.022 8 1.3 BA3b 910 420 1557 2.982 0.552 0.126 0.257 488 3.9 BA4a 889 580 1410 2.599 0.463 0.097 0.024 5 0.9 BA4p 4210 2470 8646 2.896 0.603 0.138 0.089 159 12.0 BA6 705 443 1417 2.826 0.341 0.158 0.061 14 1.8 BA44 958 541 1830 2.665 0.475 0.139 0.050 16 1.9 BA45 3911 2486 5339 2.069 0.655 0.147 0.061 84 9.8 V1 4370 2515 6310 2.231 0.539 0.151 0.060 77 11.0 V2 264 175 479 2.729 0.439 0.112 0.031 2 0.3 MT /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/label #-------------------------------------------- #@# Ex-vivo Entorhinal Cortex Label lh Fri Apr 5 23:10:35 CEST 2013 mris_spherical_average -erode 1 -orig white -t 0.4 -o ACC019 label lh.entorhinal lh sphere.reg lh.EC_average lh.entorhinal_exvivo.label painting output onto subject ACC019. processing subject lh.EC_average... reading output surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.sphere.reg... eroding label 1 times before writing thresholding label stat at 0.400 before writing only 1 subject - copying statistics... writing label with 720 points to lh.entorhinal_exvivo.label... LabelWrite: saving to lh.entorhinal_exvivo.label mris_anatomical_stats -mgz -f ../stats/lh.entorhinal_exvivo.stats -b -l ./lh.entorhinal_exvivo.label ACC019 lh white limiting computations to label ./lh.entorhinal_exvivo.label. reading volume /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/wm.mgz... reading input surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.white... reading input pial surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.pial... reading input white surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/lh.white... INFO: assuming MGZ format for volumes. table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name 252 150 834 3.454 0.787 0.160 0.069 8 0.9 ./lh.entorhinal_exvivo.label #-------------------------------------------- #@# Ex-vivo Entorhinal Cortex Label rh Fri Apr 5 23:10:49 CEST 2013 mris_spherical_average -erode 1 -orig white -t 0.4 -o ACC019 label rh.entorhinal rh sphere.reg rh.EC_average rh.entorhinal_exvivo.label painting output onto subject ACC019. processing subject rh.EC_average... reading output surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.sphere.reg... eroding label 1 times before writing thresholding label stat at 0.400 before writing only 1 subject - copying statistics... writing label with 637 points to rh.entorhinal_exvivo.label... LabelWrite: saving to rh.entorhinal_exvivo.label mris_anatomical_stats -mgz -f ../stats/rh.entorhinal_exvivo.stats -b -l ./rh.entorhinal_exvivo.label ACC019 rh white limiting computations to label ./rh.entorhinal_exvivo.label. reading volume /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/mri/wm.mgz... reading input surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.white... reading input pial surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.pial... reading input white surface /home/linux/Documentos/FREESURFER/Freesurfer_prediction/Freesurfer/ACC019/surf/rh.white... INFO: assuming MGZ format for volumes. table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name 233 142 775 3.412 0.562 0.118 0.051 4 0.5 ./rh.entorhinal_exvivo.label #------------------------------------------ recon-all -s ACC019 finished without error at Fri Apr 5 23:11:03 CEST 2013 done