yes, they are documented pretty extensively on our wiki
https://surfer.nmr.mgh.harvard.edu/fswiki/CoordinateSystems
On Fri, 26 Feb 2016, Maheen Siddiqui wrote:
Hi,
Thanks for your reply. I have sought advice from someone who is experienced
in Homer2 atlas viewer.
Is it possible to find out the the coordinate system of the T1.mgz file and
the surface file created by FreeSurfer?
Thanks!
On Fri, Feb 26, 2016 at 3:36 PM, dgw <dgwakeman@gmail.com> wrote:
Maheen,
it sounds like a question that could be better answered by the
Homer2 list.
hth
d
On Fri, Feb 26, 2016 at 8:13 AM, Maheen Siddiqui
<maheen.siddiqui91@gmail.com> wrote:
> Dear FreeSurfer Users,
>
> I have a head surface mesh and a pial surface mesh obtained
after
> segmentation of a T1 MRI scan. I am going to importing these
into Homer2
> Atlas Viewer as subject anatomy.
>
> However before I can do this import successfully, I need to
bring the two
> meshes into the same coordinate system. At the moment they are
in different
> coordinate systems (as pictured) and I need to bring the pial
surface mesh
> into the head surface mesh. I am a little unsure how to do
this.
>
> Does anybody have any experience with this? Or any advice on
what I could do
> possibly?
>
> Thanks,
>
> Maheen
>
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