Hello Freesurferers,

I’m trying to use a functional label (extracted from task functional BOLD data), as a seed for functional connectivity.

I tried to use the fcseed-config with -roi , but when I ran the fcseed-sess, I got this error: “If: expression syntax error”.

Could you please let me know what the problem is? 

fcseed-config  -roi ${label}.label  -fcname ${label}.dat -fsd rest -rlf restruns -mean -cfg ${label}.config -force

fcseed-sess  -s ${subj}   -d ../  -cfg /${label}.config

Thanks,

Mona

Zahra (Mona) Nasiriavanaki, M.D.
Postdoctoral Research Fellow

Department of Psychiatry
Massachusetts General Hospital
149 13th Street, 149-2615
Boston, MA, USA, 02129

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