Hello, I have been running freesurfer in G5 Macs with Panther. I was
able to parcellate and retrieve data of the different areas. 

However, recently we changed the OS from Panther to Tiger. Since then,
I have the following problem:


When I do mris_anatomical_stats:


[ogden:freesurfer_package/freesurfer/subjects] wpark%
mris_anatomical_stats -b -a 14649/label/rh.aparc.annot 14649 rh

computing statistics for each annotation in 14649/label/rh.aparc.annot.

reading volume
/usr/local/freesurfer_package/freesurfer/subjects/14649/mri/wm...

reading input surface
/usr/local/freesurfer_package/freesurfer/subjects/14649/surf/rh.white...

I<color><param>FFFD,0000,0000</param>NFO: Volume
/tmp/mritotal_2576/orig_8_dxyz.mnc cannot be found.

</color>INFO: found the orig volume (mri/orig) to get c_(ras)
information for src

INFO: added info to the surface.

done.

computing second fundamental form...reading colortable from annotation
file...

colortable with 0 entries read (originally )

done.

total white matter volume               = 509402 mm^3


table columns are:

    number of vertices

    total surface area (mm^2)

    total gray matter volume (mm^3)

    average cortical thickness +- standard error (mm)

    integrated rectified mean curvature

    integrated rectified Gaussian curvature

    folding index

    intrinsic curvature index

    structure name


 3758   2149   4165  1.950 +- 0.579     0.199     0.067   75.676  
9.502  ** annotation 003c148c

 2251   1174   3233  2.652 +- 0.702     0.200     0.081   67.771  
6.118  ** annotation 00b43cb4

 1285    731   1674  2.284 +- 0.590     0.179     0.065   25.068  
2.573  ** annotation 003cdc14

 1282    792   1629  2.076 +- 0.523     0.170     0.041   14.336  
1.902  ** annotation 00dc3c65

 1304    794   1569  2.005 +- 0.501     0.190     0.044   19.070  
2.299  ** annotation 008c1415

  306    137    291  2.137 +- 0.534     0.147     0.025    3.083  
0.471  ** annotation 00b43c15

 1604    935   1722  1.840 +- 0.477     0.203     0.070   34.702  
3.964  ** annotation 001414b4

 2363   1479   3196  2.165 +- 0.602     0.160     0.035   27.198  
3.101  ** annotation 00b46465

 2602   1659   3292  1.968 +- 0.729     0.189     0.052   47.088  
5.998  ** annotation 00b4b43f

 2299   1339   3348  2.510 +- 0.575     0.192     0.051   50.159  
4.279  ** annotation 00dcb4dc

  548    309    766  2.469 +- 0.454     0.165     0.043    5.623  
0.997  ** annotation 00c8c80a

 1015    591   1455  2.481 +- 0.499     0.196     0.056   24.732  
1.704  ** annotation 0064dc8c

..........


Instead of having the name of different areas, I receive
"annotation..."


Curiously, this does not happen if I do mris_anatomical_stats in
previously parcellated brains (before the new installation). This
happens when I parcellate_subject and then I try to get the info of
the areas. 


This is what I got when I parcellate:


[ogden:freesurfer_package/freesurfer/subjects] wpark%
parcellate_subject 14649

reading atlas from
/usr/local/freesurfer_package/freesurfer/average/lh.atlas2002_simple.gcs...

reading color table from GCSA file....

reading color table from GCSA file....

input 1: CURVATURE FILE, flags 0, avgs 0, name sulc

input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature

labeling surface...

relabeling using gibbs priors...

000:   9935 changed, 137093 examined...

001:   2397 changed, 37088 examined...

002:    731 changed, 12222 examined...

003:    340 changed, 4117 examined...

004:    155 changed, 1818 examined...

005:     88 changed, 871 examined...

006:     47 changed, 459 examined...

007:     28 changed, 255 examined...

008:     19 changed, 160 examined...

009:     12 changed, 97 examined...

010:     10 changed, 64 examined...

011:      5 changed, 64 examined...

012:      3 changed, 27 examined...

013:      2 changed, 19 examined...

014:      1 changed, 9 examined...

015:      0 changed, 6 examined...

000: 340 total segments, 238 labels (3015 vertices) changed

001: 123 total segments, 23 labels (316 vertices) changed

002: 104 total segments, 4 labels (20 vertices) changed

003: 100 total segments, 0 labels (0 vertices) changed

10 filter iterations complete (10 requested, 164 changed)

writing output to
/usr/local/freesurfer_package/freesurfer/subjects/14649/label/lh.aparc.annot...

writing colortable into annotation file...

classification took 3 minutes and 42 seconds.

reading atlas from
/usr/local/freesurfer_package/freesurfer/average/rh.atlas2002_simple.gcs...

reading color table from GCSA file....

reading color table from GCSA file....

input 1: CURVATURE FILE, flags 0, avgs 0, name sulc

input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature

labeling surface...

relabeling using gibbs priors...

000:   9869 changed, 137521 examined...

001:   2399 changed, 36932 examined...

002:    698 changed, 12235 examined...

003:    282 changed, 3952 examined...

004:    150 changed, 1565 examined...

005:     81 changed, 821 examined...

006:     58 changed, 453 examined...

007:     30 changed, 299 examined...

008:     10 changed, 170 examined...

009:      4 changed, 54 examined...

010:      4 changed, 26 examined...

011:      3 changed, 22 examined...

012:      2 changed, 17 examined...

013:      2 changed, 14 examined...

014:      1 changed, 8 examined...

015:      0 changed, 10 examined...

000: 303 total segments, 200 labels (2164 vertices) changed

001: 114 total segments, 14 labels (62 vertices) changed

002: 100 total segments, 0 labels (0 vertices) changed

10 filter iterations complete (10 requested, 127 changed)

writing output to
/usr/local/freesurfer_package/freesurfer/subjects/14649/label/rh.aparc.annot...

writing colortable into annotation file...

classification took 3 minutes and 38 seconds.

[ogden:freesurfer_package/freesurfer/subjects] wpark%



Anybody please could help me? I am a little desperate...


Wan Park