Not sure, can you try this
cd /home/liubing/FreeSurfer/data/test_recon/ANDI1/mri
mri_nu_correct.mni --debug --i orig.mgz --o nu.mgz --uchar transforms/talairach.xfm --n 2 --ants-n4 >& nucor.log
and send the file nucor.log

On 5/28/2021 7:51 AM, liub wrote:

External Email - Use Caution

Hello FreeSurfer Developers,

I'm attempting to recon-all my NIfTI-1 data ,while after a few minutes of running,there was an error:

mris_calc -o /dev/shm/tmp.mri_nu_correct.mni.897826/nu0.mgz /dev/shm/tmp.mri_nu_correct.mni.897826/nu0.mgz mul

Segmentation fault (core dumped)

Command exited with non-zero status 1

Also when I ran the command "recon-all -all -s bert" using the official data in */freesurfer/subjects/bert ,it raised the same error. I googled this error,but there's still no answer.I've attached the recon-all.log. The recon-all.log is belong to bert and recon-all(1).log is belong to my data.

Here is my operating system info :

uname -a: Linux HEUBME.com 4.18.0-193.28.1.el8_2.x86_64 #1 SMP Thu Oct 22 00:20:22 UTC 2020 x86_64 x86_64 x86_64 GNU/Linux

Platform: CentOS Linux release 8.3.2011

FreeSurfer version: freesurfer-Linux-centos8_x86_64-7.1.1

Thank you for your kind help.

Best regards.
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