[iMac-di-Stefano:/Applications/freesurfer/bin] Stefano% ls -l
total 4780656
-rwxr-xr-x 1 root wheel 60776 Jan 29 00:20 #trac-all#
-rwxr-xr-x 1 root wheel 27224 May 14 17:07 4dfptoanalyze
-rwxr-xr-x 1 root wheel 12925 May 14 17:07 LongQdecTable.py
-rwxr-xr-x@ 1 Stefano wheel 7581520 Jun 6 23:24 Unknown
-rwxr-xr-x 1 root wheel 936 May 14 17:07 UpdateNeeded
-rwxr-xr-x 1 root wheel 22628 May 14 17:07 analyzeto4dfp
-rwxr-xr-x 1 root wheel 7660 May 14 17:07 aparc2feat
-rwxr-xr-x 1 root wheel 15795 May 14 17:07 aparcstats2table
-rwxr-xr-x 1 root wheel 4657 May 14 17:07 aparcstatsdiff
-rwxr-xr-x 1 root wheel 7075840 May 14 17:07 applyMorph
-rwxr-xr-x 1 root wheel 8927 May 14 17:07 aseg2feat
-rwxr-xr-x 1 root wheel 23702 May 14 17:07 asegstats2table
-rwxr-xr-x 1 root wheel 3450 May 14 17:07 asegstatsdiff
-rwxr-xr-x 1 root wheel 2087 May 14 17:07 avi2talxfm
-rwxr-xr-x 1 root wheel 2209 May 14 17:07 batchjobs
-rwxr-xr-x 1 root wheel 5756 May 14 17:07 bblabel
-rwxr-xr-x 1 root wheel 24890 May 14 17:07 bbregister
-rwxr-xr-x 1 root wheel 14696 May 14 17:07 bedpostx_mgh
-rwxr-xr-x 1 root wheel 13268 May 14 17:07 bet.fsl
-rwxr-xr-x 1 root wheel 7144 May 14 17:07 beta2sxa
-rwxr-xr-x 1 root wheel 7710 May 14 17:07 biasfield
-rwxr-xr-x 1 root wheel 417 May 14 17:07 brec
-rwxr-xr-x 1 root wheel 973 May 14 17:07 brec.awk
-rwxr-xr-x 1 root wheel 10814 May 14 17:07 browse-minc-header.tcl
-rwxr-xr-x 1 root wheel 2201 May 14 17:07 bugr
-rwxr-xr-x 1 root wheel 1245 May 14 17:07 build_desikan_killiany_gcs.csh
-rwxr-xr-x 1 root wheel 75584 May 14 17:07 check_siemens_dir
-rwxr-xr-x 1 root wheel 2496 May 14 17:07 check_subject
-rwxr-xr-x 1 root wheel 1113 May 14 17:07 clear_fs_env.csh
-rwxr-xr-x 1 root wheel 4458 May 14 17:07 compute_interrater_variability.csh
-rwxr-xr-x 1 root wheel 4490 May 14 17:07 compute_label_volumes.csh
-rwxr-xr-x 1 root wheel 214788 May 14 17:07 compute_vox2vox
-rwxr-xr-x 1 root wheel 6389728 May 14 17:07 connectgraph
-rwxr-xr-x 1 root wheel 6776500 May 14 17:07 conv1d_test
-rwxr-xr-x 1 root wheel 7133948 May 14 17:07 conv1d_test_cuda
-rwxr-xr-x 1 root wheel 6794716 May 14 17:07 convgaussian_test
-rwxr-xr-x 1 root wheel 7119796 May 14 17:07 convgaussian_test_cuda
-rwxr-xr-x 1 root wheel 1010 May 14 17:07 cor_to_minc
-rwxr-xr-x 1 root wheel 4378 May 14 17:07 cp-dicom
-rwxr-xr-x 1 root wheel 6893596 May 14 17:07 createMorph
-rwxr-xr-x 1 root wheel 1851 May 14 17:07 cuda_setup
-rwxr-xr-x 1 root wheel 76 May 14 17:07 cudadetect
-rwxr-xr-x 1 root wheel 13308 May 14 17:07 cudadetect.bin
-rwxr-xr-x 1 root wheel 12100 May 14 17:07 datastruct_utils.py
-rwxr-xr-x 1 root wheel 6122 May 14 17:07 dcmdir-info-mgh
-rwxr-xr-x 1 root wheel 23416 May 14 17:07 dcmunpack
-rwxr-xr-x 1 root wheel 938 May 14 17:07 deface_subject
-rwxr-xr-x 1 root wheel 8865 May 14 17:07 defect-seg
-rwxr-xr-x 1 root wheel 4616 May 14 17:07 dicom-rename
-rwxr-xr-x 1 root wheel 6452672 May 14 17:07 dmri_mergepaths
-rwxr-xr-x 1 root wheel 6651560 May 14 17:07 dmri_paths
-rwxr-xr-x 1 root wheel 6545252 May 14 17:07 dmri_pathstats
-rwxr-xr-x 1 root wheel 6460264 May 14 17:07 dmri_spline
-rwxr-xr-x 1 root wheel 6525716 May 14 17:07 dmri_tensoreig
-rwxr-xr-x 1 root wheel 6660692 May 14 17:07 dmri_train
-rwxr-xr-x 1 root wheel 6519924 May 14 17:07 dmri_trk2trk
-rwxr-xr-x 1 root wheel 6501728 May 14 17:07 dmri_vox2vox
-rwxr-xr-x 1 root wheel 6265 May 14 17:07 dmrirc.example
-rwxr-xr-x 1 root wheel 7361 May 14 17:07 dmrirc.long.example
-rwxr-xr-x 1 root wheel 20888 May 14 17:07 dsh
-rwxr-xr-x 1 root wheel 14691 May 14 17:07 dt_recon
-rwxr-xr-x 1 root wheel 31462 May 14 17:07 epidewarp.fsl
-rwxr-xr-x 1 root wheel 6944772 May 14 17:07 exportGcam
-rwxr-xr-x 1 root wheel 313 May 14 17:07 extract_talairach_avi_QA.awk
-rwxr-xr-x 1 root wheel 8070 May 14 17:07 feat2segstats
-rwxr-xr-x 1 root wheel 12563 May 14 17:07 feat2surf
-rwxr-xr-x 1 root wheel 581 May 14 17:07 findsession
-rwxr-xr-x 1 root wheel 756 May 14 17:07 fix_subject
-rwxr-xr-x 1 root wheel 1114 May 14 17:07 fix_subject-lh
-rwxr-xr-x 1 root wheel 1114 May 14 17:07 fix_subject-rh
-rwxr-xr-x 1 root wheel 731 May 14 17:07 fix_subject_corrected
-rwxr-xr-x 1 root wheel 1447 May 14 17:07 fix_subject_corrected-lh
-rwxr-xr-x 1 root wheel 1358 May 14 17:07 fix_subject_corrected-rh
-rwxr-xr-x 1 root wheel 952 May 14 17:07 fix_subject_on_seychelles
-rwxr-xr-x 1 root wheel 3369 May 14 17:07 fixup_mni_paths
-rwxr-xr-x 1 root wheel 5781 May 14 17:07 flip4fsl
-rwxr-xr-x 1 root wheel 23072 May 14 17:07 flip_4dfp
-rwxr-xr-x 1 root wheel 9859960 May 14 17:07 flirt.fsl
-rw-r--r-- 1 root wheel 2919 May 14 17:07 flirt.newdefault.20080811.sch
-rwxr-xr-x 1 root wheel 1408 May 14 17:07 fname2ext
-rwxr-xr-x 1 root wheel 1438 May 14 17:07 fname2stem
-rwxr-xr-x 1 root wheel 855 May 14 17:07 freesurfer
-rwxr-xr-x 1 root wheel 184 May 14 17:07 freeview
-rwxr-xr-x 1 root wheel 445424 May 14 17:07 fsPrintHelp
-rwxr-xr-x 1 root wheel 4352 May 14 17:07 fs_lib_check
-rwxr-xr-x 1 root wheel 635 May 14 17:07 fs_time
-rwxr-xr-x 1 root wheel 7691 May 14 17:07 fscalc
-rwxr-xr-x 1 root wheel 5794 May 14 17:07 fscalc.fsl
-rwxr-xr-x 1 root wheel 138 May 14 17:07 fsfget
-rwxr-xr-x 1 root wheel 4391 May 14 17:07 fsfget.tcl
-rwxr-xr-x 1 root wheel 2815 May 14 17:07 fsgd_parser.py
-rwxr-xr-x 1 root wheel 445424 May 14 17:07 fshelp
-rwxr-xr-x 1 root wheel 6368760 May 14 17:08 fsl_label2voxel
-rwxr-xr-x 1 root wheel 15462 May 14 17:08 fsl_rigid_register
-rwxr-xr-x 1 root wheel 16491 May 14 17:08 fsl_sub_mgh
-rwxr-xr-x 1 root wheel 11157384 May 14 17:08 fslmaths.fsl
-rwxr-xr-x 1 root wheel 8657972 May 14 17:08 fslorient.fsl
-rwxr-xr-x 1 root wheel 20703 May 14 17:08 fslregister
-rwxr-xr-x 1 root wheel 5964 May 14 17:08 fslswapdim.fsl
-rwxr-xr-x 1 root wheel 445424 May 14 17:08 fsman
-rwxr-xr-x 1 root wheel 1340 May 14 17:08 fsr-checkxopts
-rwxr-xr-x 1 root wheel 1479 May 14 17:08 fsr-getxopts
-rwxr-xr-x 1 root wheel 14608 May 14 17:08 fsutils.py
-rwxr-xr-x 1 root wheel 236204 May 14 17:08 gauss_4dfp
-rwxr-xr-x 1 root wheel 1069708 May 14 17:08 gca_read_test
-rwxr-xr-x 1 root wheel 449800 May 14 17:08 gcamCompare
-rwxr-xr-x 1 root wheel 1133256 May 14 17:08 gcam_addstatus_test
-rwxr-xr-x 1 root wheel 818320 May 14 17:08 gcam_addstatus_test_cuda
-rwxr-xr-x 1 root wheel 1167736 May 14 17:08 gcam_applygradient_test
-rwxr-xr-x 1 root wheel 1266424 May 14 17:08 gcam_applygradient_test_cuda
-rwxr-xr-x 1 root wheel 1092372 May 14 17:08 gcam_clear_test
-rwxr-xr-x 1 root wheel 1217244 May 14 17:08 gcam_clear_test_cuda
-rwxr-xr-x 1 root wheel 1101124 May 14 17:08 gcam_cmp_test
-rwxr-xr-x 1 root wheel 818320 May 14 17:08 gcam_cmp_test_cuda
-rwxr-xr-x 1 root wheel 6710676 May 14 17:08 gcam_jacobenergy_test
-rwxr-xr-x 1 root wheel 818352 May 14 17:08 gcam_jacobenergy_test_cuda
-rwxr-xr-x 1 root wheel 1146064 May 14 17:08 gcam_jacobterm_test
-rwxr-xr-x 1 root wheel 818320 May 14 17:08 gcam_jacobterm_test_cuda
-rwxr-xr-x 1 root wheel 1064196 May 14 17:08 gcam_labelenergy_test
-rwxr-xr-x 1 root wheel 818328 May 14 17:08 gcam_labelenergy_test_cuda
-rwxr-xr-x 1 root wheel 6784284 May 14 17:08 gcam_labelterm_copydeltas_test
-rwxr-xr-x 1 root wheel 822472 May 14 17:08 gcam_labelterm_copydeltas_test_cuda
-rwxr-xr-x 1 root wheel 6784284 May 14 17:08 gcam_labelterm_final_test
-rwxr-xr-x 1 root wheel 822472 May 14 17:08 gcam_labelterm_final_test_cuda
-rwxr-xr-x 1 root wheel 6897540 May 14 17:08 gcam_labelterm_mainloop_test
-rwxr-xr-x 1 root wheel 822528 May 14 17:08 gcam_labelterm_mainloop_test_cuda
-rwxr-xr-x 1 root wheel 6802372 May 14 17:08 gcam_labelterm_postantconsist_test
-rwxr-xr-x 1 root wheel 822496 May 14 17:08 gcam_labelterm_postantconsist_test_cuda
-rwxr-xr-x 1 root wheel 6869460 May 14 17:08 gcam_labelterm_removeoutliers_test
-rwxr-xr-x 1 root wheel 822296 May 14 17:08 gcam_labelterm_removeoutliers_test_cuda
-rwxr-xr-x 1 root wheel 6910236 May 14 17:08 gcam_labelterm_test
-rwxr-xr-x 1 root wheel 822504 May 14 17:08 gcam_labelterm_test_cuda
-rwxr-xr-x 1 root wheel 6735988 May 14 17:08 gcam_lle_test
-rwxr-xr-x 1 root wheel 818352 May 14 17:08 gcam_lle_test_cuda
-rwxr-xr-x 1 root wheel 6792924 May 14 17:08 gcam_llterm_test
-rwxr-xr-x 1 root wheel 822504 May 14 17:08 gcam_llterm_test_cuda
-rwxr-xr-x 1 root wheel 6871988 May 14 17:08 gcam_removesingularities_test
-rwxr-xr-x 1 root wheel 1266080 May 14 17:08 gcam_removesingularities_test_cuda
-rwxr-xr-x 1 root wheel 1133256 May 14 17:08 gcam_removestatus_test
-rwxr-xr-x 1 root wheel 818320 May 14 17:08 gcam_removestatus_test_cuda
-rwxr-xr-x 1 root wheel 6867788 May 14 17:08 gcam_smoothgradient_test
-rwxr-xr-x 1 root wheel 818320 May 14 17:08 gcam_smoothgradient_test_cuda
-rwxr-xr-x 1 root wheel 1064212 May 14 17:08 gcam_smoothnessenergy_test
-rwxr-xr-x 1 root wheel 818328 May 14 17:08 gcam_smoothnessenergy_test_cuda
-rwxr-xr-x 1 root wheel 1137616 May 14 17:08 gcam_smoothnessterm_test
-rwxr-xr-x 1 root wheel 818320 May 14 17:08 gcam_smoothnessterm_test_cuda
-rwxr-xr-x 1 root wheel 1092340 May 14 17:08 gcam_undogradient_test
-rwxr-xr-x 1 root wheel 1217244 May 14 17:08 gcam_undogradient_test_cuda
-rwxr-xr-x 1 root wheel 1092260 May 14 17:08 gcam_write_test
-rwxr-xr-x 1 root wheel 1403736 May 14 17:08 gcam_write_test_cuda
-rwxr-xr-x 1 root wheel 783 May 14 17:08 get_label_thickness
-rwxr-xr-x 1 root wheel 968 May 14 17:08 getfullpath
-rwxr-xr-x 1 root wheel 205384 May 14 17:08 gifti_test
-rwxr-xr-x 1 root wheel 280720 May 14 17:08 gifti_tool
-rwxr-xr-x 1 root wheel 16812 May 14 17:08 grad_unwarp
-rwxr-xr-x 1 root wheel 228 May 14 17:08 help_xml_validate
-rwxr-xr-x 1 root wheel 6668372 May 14 17:08 hiam_make_surfaces
-rwxr-xr-x 1 root wheel 6723212 May 14 17:08 hiam_make_template
-rwxr-xr-x 1 root wheel 6839244 May 14 17:08 hiam_register
-rwxr-xr-x 1 root wheel 6470716 May 14 17:08 histo_compute_joint_density
-rwxr-xr-x 1 root wheel 6449756 May 14 17:08 histo_fix_topology
-rwxr-xr-x 1 root wheel 6557828 May 14 17:08 histo_register_block
-rwxr-xr-x 1 root wheel 6449748 May 14 17:08 histo_segment
-rwxr-xr-x 1 root wheel 6462572 May 14 17:08 histo_synthesize
-rwxr-xr-x 1 root wheel 13344 May 14 17:08 ico_supersample
-rw-r--r-- 1 root wheel 128 May 14 17:08 id.xfm
-rwxr-xr-x 1 root wheel 18444 May 14 17:08 ifh2hdr
-rwxr-xr-x 1 root wheel 260684 May 14 17:08 imgreg_4dfp
-rwxr-xr-x 1 root wheel 993 May 14 17:08 inflate_subject
-rwxr-xr-x 1 root wheel 979 May 14 17:08 inflate_subject-lh
-rwxr-xr-x 1 root wheel 978 May 14 17:08 inflate_subject-rh
-rwxr-xr-x 1 root wheel 1080 May 14 17:08 inflate_subject3
-rwxr-xr-x 1 root wheel 1050 May 14 17:08 inflate_subject_new
-rwxr-xr-x 1 root wheel 992 May 14 17:08 inflate_subject_new-lh
-rwxr-xr-x 1 root wheel 995 May 14 17:08 inflate_subject_new-rh
-rwxr-xr-x 1 root wheel 1060 May 14 17:08 inflate_subject_sc
-rwxr-xr-x 1 root wheel 1857 May 14 17:08 is-surface
-rwxr-xr-x 1 root wheel 1133 May 14 17:08 isanalyze
-rwxr-xr-x 1 root wheel 1377 May 14 17:08 isnifti
-rw-------@ 1 Stefano wheel 46574724 Mar 22 20:48 kvl.zip
-rwxr-xr-x 1 root wheel 5059016 May 14 17:08 kvlAddBorder
-rwxr-xr-x 1 root wheel 386448 May 14 17:08 kvlAddMeshToMeshCollection
-rwxr-xr-x 1 root wheel 5123480 May 14 17:08 kvlAddProbabilityImages
-rwxr-xr-x 1 root wheel 5776276 May 14 17:08 kvlApplyTransform
-rwxr-xr-x 1 root wheel 5054592 May 14 17:08 kvlAugmentManualSegmentationWithAutomatedSegmentation
-rwxr-xr-x 1 root wheel 5269008 May 14 17:08 kvlAutoCrop
-rwxr-xr-x 1 root wheel 5233008 May 14 17:09 kvlBinaryThresholdImage
-rwxr-xr-x 1 root wheel 5458048 May 14 17:09 kvlCalculateAtlasMeshCollectionTotalCost
-rwxr-xr-x 1 root wheel 5410272 May 14 17:09 kvlCalculatePositionCost
-rwxr-xr-x 1 root wheel 386576 May 14 17:09 kvlChangeKOfMeshCollection
-rwxr-xr-x 1 root wheel 386576 May 14 17:09 kvlChangePointParametersOfMeshCollection
-rwxr-xr-x 1 root wheel 5141260 May 14 17:09 kvlColorCodeProbabilityImages
-rwxr-xr-x 1 root wheel 5054592 May 14 17:09 kvlCombineManualSegmentationProtocols
-rwxr-xr-x 1 root wheel 5147652 May 14 17:09 kvlCompressImage
-rwxr-xr-x 1 root wheel 5099284 May 14 17:09 kvlConvert
-rwxr-xr-x 1 root wheel 5054592 May 14 17:09 kvlCorrectLeftSideLabelsToRightSideLabels
-rwxr-xr-x 1 root wheel 5064152 May 14 17:09 kvlCrop
-rwxr-xr-x 1 root wheel 5331608 May 14 17:09 kvlCropImage
-rwxr-xr-x 1 root wheel 6325772 May 14 17:09 kvlEMSegment
-rwxr-xr-x 1 root wheel 5041884 May 14 17:09 kvlEvaluateQuantitatively
-rwxr-xr-x 1 root wheel 5540468 May 14 17:09 kvlEvaluateQuantitativelyWithHausdorffDistance
-rwxr-xr-x 1 root wheel 659156 May 14 17:09 kvlMapDeformationField
-rwxr-xr-x 1 root wheel 409828 May 14 17:09 kvlMapLabelsOfAtlasMesh
-rwxr-xr-x 1 root wheel 5185832 May 14 17:09 kvlMaskImage
-rwxr-xr-x 1 root wheel 5567716 May 14 17:09 kvlMathematicalMorphology
-rwxr-xr-x 1 root wheel 386400 May 14 17:09 kvlMergeMeshCollections
-rwxr-xr-x 1 root wheel 5469044 May 14 17:09 kvlOptimizePositionsWithICM
-rwxr-xr-x 1 root wheel 5058872 May 14 17:09 kvlOverwriteEmptySlices
-rwxr-xr-x 1 root wheel 7925 May 14 17:09 kvlQuantifyHippocampalSubfieldSegmentations.sh
-rwxr-xr-x 1 root wheel 5068640 May 14 17:09 kvlQuantifyPosteriorProbabilityImages
-rwxr-xr-x 1 root wheel 5474896 May 14 17:09 kvlRasterizeAtlasMesh
-rwxr-xr-x 1 root wheel 5189624 May 14 17:09 kvlReduceNumberOfIntensityLevels
-rwxr-xr-x 1 root wheel 6419628 May 14 17:09 kvlRegister
-rwxr-xr-x 1 root wheel 5447184 May 14 17:09 kvlResample
-rwxr-xr-x 1 root wheel 5779196 May 14 17:09 kvlSamplePositionsFromMeshCollection
-rwxr-xr-x 1 root wheel 386576 May 14 17:09 kvlScaleMeshCollection
-rwxr-xr-x 1 root wheel 13393 May 14 17:09 kvlSegmentHippocampalSubfields.sh
-rwxr-xr-x 1 root wheel 6576776 May 14 17:09 kvlSegmentWithoutGUI
-rwxr-xr-x 1 root wheel 87 May 14 17:09 kvlSetHardCodedLocations.sh
-rwxr-xr-x 1 root wheel 386944 May 14 17:09 kvlSetReferencePosition
-rwxr-xr-x 1 root wheel 398500 May 14 17:09 kvlSmoothMesh
-rwxr-xr-x 1 root wheel 3772 May 14 17:09 kvlTestHippocampalSubfields.sh
-rwxr-xr-x 1 root wheel 5252204 May 14 17:09 kvlUpsample
-rwxr-xr-x 1 root wheel 707040 May 14 17:09 kvlUpsampleMesh
-rwxr-xr-x 1 root wheel 1685 May 14 17:09 kww_setup
-rwxr-xr-x 1 root wheel 6568164 May 14 17:09 label2flat
-rwxr-xr-x 1 root wheel 6471076 May 14 17:09 label2patch
-rwxr-xr-x 1 root wheel 6454060 May 14 17:09 label_area
-rwxr-xr-x 1 root wheel 6458356 May 14 17:09 label_border
-rwxr-xr-x 1 root wheel 988 May 14 17:09 label_child
-rwxr-xr-x 1 root wheel 932 May 14 17:09 label_elderly_subject
-rwxr-xr-x 1 root wheel 1795 May 14 17:09 label_subject
-rwxr-xr-x 1 root wheel 934 May 14 17:09 label_subject_flash
-rwxr-xr-x 1 root wheel 876 May 14 17:09 label_subject_mixed
-rwxr-xr-x 1 root wheel 1736 May 14 17:09 labels_disjoint
-rwxr-xr-x 1 root wheel 1619 May 14 17:09 labels_intersect
-rwxr-xr-x 1 root wheel 1566 May 14 17:09 labels_union
-rwxr-xr-x 1 root wheel 58322 May 14 17:09 long_mris_slopes
-rwxr-xr-x 1 root wheel 5415 May 14 17:09 long_qdec_table
-rwxr-xr-x 1 root wheel 10017 May 14 17:09 long_stats_combine
-rwxr-xr-x 1 root wheel 27990 May 14 17:09 long_stats_slopes
-rwxr-xr-x 1 root wheel 10048 May 14 17:09 long_stats_tps
-rwxr-xr-x 1 root wheel 40308 May 14 17:09 long_submit_jobs
-rwxr-xr-x 1 root wheel 11280 May 14 17:09 long_submit_postproc
-rwxr-xr-x 1 root wheel 13038 May 14 17:09 lpcregister
-rwxr-xr-x 1 root wheel 6416496 May 14 17:09 lta_diff
-rwxr-xr-x 1 root wheel 7565 May 14 17:09 make-segvol-table
-rwxr-xr-x 1 root wheel 7465 May 14 17:09 make_average_subcort
-rwxr-xr-x 1 root wheel 9386 May 14 17:09 make_average_subject
-rwxr-xr-x 1 root wheel 19017 May 14 17:09 make_average_surface
-rwxr-xr-x 1 root wheel 14641 May 14 17:09 make_average_volume
-rwxr-xr-x 1 root wheel 4176 May 14 17:09 make_cortex_label
-rwxr-xr-x 1 root wheel 2230 May 14 17:09 make_hemi_mask
-rwxr-xr-x 1 root wheel 2088 May 14 17:09 make_symmetric
-rwxr-xr-x 1 root wheel 2198 May 14 17:09 make_upright
-rwxr-xr-x 1 root wheel 6437328 May 14 17:09 makevol
-rwxr-xr-x 1 root wheel 915 May 14 17:09 map_all_labels
-rwxr-xr-x 1 root wheel 809 May 14 17:09 map_all_labels-lh
-rwxr-xr-x 1 root wheel 849 May 14 17:09 map_central_sulcus
-rwxr-xr-x 1 root wheel 2726 May 14 17:09 map_to_base
-rwxr-xr-x 1 root wheel 6772308 May 14 17:09 meanfilter_test
-rwxr-xr-x 1 root wheel 7137180 May 14 17:09 meanfilter_test_cuda
-rwxr-xr-x 1 root wheel 3747 May 14 17:09 meanval
-rwxr-xr-x 1 root wheel 20796 May 14 17:09 merge_stats_tables
-rwxr-xr-x 1 root wheel 3506 May 14 17:09 minc2seqinfo
-rwxr-xr-x 1 root wheel 694 May 14 17:09 misc.py
-rwxr-xr-x 1 root wheel 19858 May 14 17:09 mkfsdist
-rwxr-xr-x 1 root wheel 9407 May 14 17:09 mkheadsurf
-rwxr-xr-x 1 root wheel 555 May 14 17:09 mkima_index.tcl
-rwxr-xr-x 1 root wheel 555 May 14 17:09 mkmnc_index.tcl
-rwxr-xr-x 1 root wheel 1694 May 14 17:09 mksubjdirs
-rwxr-xr-x 1 root wheel 7215 May 14 17:09 mksurfatlas
-rwxr-xr-x 1 root wheel 6400044 May 14 17:09 mkxsubjreg
-rwxr-xr-x 1 root wheel 6222 May 14 17:09 mni152reg
-rwxr-xr-x 1 root wheel 713 May 14 17:09 morph_only_subject
-rwxr-xr-x 1 root wheel 989 May 14 17:09 morph_only_subject-lh
-rwxr-xr-x 1 root wheel 989 May 14 17:09 morph_only_subject-rh
-rwxr-xr-x 1 root wheel 1802 May 14 17:09 morph_rgb-lh
-rwxr-xr-x 1 root wheel 1697 May 14 17:09 morph_rgb-rh
-rwxr-xr-x 1 root wheel 986 May 14 17:09 morph_subject
-rwxr-xr-x 1 root wheel 2740 May 14 17:09 morph_subject-lh
-rwxr-xr-x 1 root wheel 2710 May 14 17:09 morph_subject-rh
-rwxr-xr-x 1 root wheel 758 May 14 17:09 morph_subject_on_seychelles
-rwxr-xr-x 1 root wheel 1166 May 14 17:09 morph_tables-lh
-rwxr-xr-x 1 root wheel 1080 May 14 17:09 morph_tables-rh
-rwxr-xr-x 1 root wheel 4966 May 14 17:09 mpr2mni305
-rwxr-xr-x 1 root wheel 6957 May 14 17:09 mri-func2sph
-rwxr-xr-x 1 root wheel 7796 May 14 17:09 mri-funcvits
-rwxr-xr-x 1 root wheel 5434 May 14 17:09 mri-sph2surf
-rwxr-xr-x 1 root wheel 6716364 May 14 17:09 mri2nc
-rwxr-xr-x 1 root wheel 6772596 May 14 17:10 mriMarkLabelBorderVoxelTest
-rwxr-xr-x 1 root wheel 7076940 May 14 17:10 mriMarkLabelBorderVoxelTest_cuda
-rwxr-xr-x 1 root wheel 6776884 May 14 17:10 mriVoxInLabelPartialVolumeTest
-rwxr-xr-x 1 root wheel 7081204 May 14 17:10 mriVoxInLabelPartialVolumeTest_cuda
-rwxr-xr-x 1 root wheel 7809 May 14 17:10 mri_add_new_tp
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-rw-r--r-- 1 root wheel 350 May 14 17:11 mri_cvs_requiredfiles.txt
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-rwxr-xr-x 1 root wheel 6587956 May 14 17:17 mris_transform
-rwxr-xr-x 1 root wheel 6458356 May 14 17:17 mris_translate_annotation
-rwxr-xr-x 1 root wheel 6571324 May 14 17:17 mris_twoclass
-rwxr-xr-x 1 root wheel 7048064 May 14 17:17 mris_volmask
-rwxr-xr-x 1 root wheel 7024080 May 14 17:17 mris_volmask_novtk
-rwxr-xr-x 1 root wheel 81 May 14 17:17 mris_volmask_vtk
-rwxr-xr-x 1 root wheel 7008888 May 14 17:17 mris_volmask_vtk.bin
-rwxr-xr-x 1 root wheel 11555 May 14 17:17 mris_volsmooth
-rwxr-xr-x 1 root wheel 6454212 May 14 17:17 mris_volume
-rwxr-xr-x 1 root wheel 6525444 May 14 17:17 mris_w_to_curv
-rwxr-xr-x 1 root wheel 6529676 May 14 17:17 mris_wm_volume
-rwxr-xr-x 1 root wheel 7058520 May 14 17:17 mrisp_paint
-rwxr-xr-x 1 root wheel 927 May 14 17:17 ms_refine_subject
-rwxr-xr-x 1 root wheel 361548 May 14 17:17 nmovie
-rwxr-xr-x 1 root wheel 171716 May 14 17:17 optseq2
-rwxr-xr-x 1 root wheel 15570 May 14 17:17 parc_atlas_jackknife_test
-rwxr-xr-x 1 root wheel 8818 May 14 17:17 pctsurfcon
-rwxr-xr-x 1 root wheel 2283 May 14 17:17 petsc_setup
-rwxr-xr-x 1 root wheel 22465 May 14 17:17 plot_structure_stats.tcl
-rwxr-xr-x 1 root wheel 4323 May 14 17:17 predict_v1.sh
-rwxr-xr-x 1 root wheel 26812 May 14 17:17 progressbar.tcl
-rwxr-xr-x 1 root wheel 259 May 14 17:17 qdec
-rwxr-xr-x 1 root wheel 8733444 May 14 17:17 qdec.bin
-rwxr-xr-x 1 root wheel 658640 May 14 17:17 qdec_glmfit
-rwxr-xr-x 1 root wheel 1764 May 14 17:17 qt_setup
-rwxr-xr-x 1 root wheel 209408 May 14 17:17 rbftest
-rwxr-xr-x 1 root wheel 7611 May 14 17:17 rcbf-prep
-rwxr-xr-x 1 root wheel 15908 May 14 17:17 rebuild_gca_atlas.csh
-rwxr-xr-x 1 root wheel 268538 May 14 17:17 recon-all
-rwxr-xr-x 1 root wheel 23095 May 14 17:17 recon-all.makefile
-rwxr-xr-x 1 root wheel 22846 May 14 17:17 reg-feat2anat
-rwxr-xr-x 1 root wheel 4341 May 14 17:17 reg-mni305.2mm
-rwxr-xr-x 1 root wheel 6376400 May 14 17:17 regdat2xfm
-rwxr-xr-x 1 root wheel 2503 May 14 17:17 register.csh
-rwxr-xr-x 1 root wheel 972 May 14 17:17 register_child
-rwxr-xr-x 1 root wheel 1106 May 14 17:17 register_elderly_subject
-rwxr-xr-x 1 root wheel 971 May 14 17:17 register_subject
-rwxr-xr-x 1 root wheel 967 May 14 17:17 register_subject_flash
-rwxr-xr-x 1 root wheel 986 May 14 17:17 register_subject_mixed
-rwxr-xr-x 1 root wheel 763 May 14 17:17 reinflate_subject
-rwxr-xr-x 1 root wheel 931 May 14 17:17 reinflate_subject-lh
-rwxr-xr-x 1 root wheel 931 May 14 17:17 reinflate_subject-rh
-rwxr-xr-x 1 root wheel 993 May 14 17:17 remove_talairach
-rwxr-xr-x 1 root wheel 763 May 14 17:17 renormalize_T1_subject
-rwxr-xr-x 1 root wheel 788 May 14 17:17 renormalize_subject
-rwxr-xr-x 1 root wheel 1002 May 14 17:17 renormalize_subject_keep_editting
-rwxr-xr-x 1 root wheel 75392 May 14 17:17 repair_siemens_file
-rwxr-xr-x 1 root wheel 948 May 14 17:17 reregister_subject_mixed
-rwxr-xr-x 1 root wheel 9158 May 14 17:17 rtview
-rwxr-xr-x 1 root wheel 6291 May 14 17:17 run-qdec-glm
-rwxr-xr-x 1 root wheel 3732 May 14 17:17 run_mris_preproc
-rwxr-xr-x 1 root wheel 1676 May 14 17:17 segment_monkey
-rwxr-xr-x 1 root wheel 1443 May 14 17:17 segment_subject
-rwxr-xr-x 1 root wheel 1732 May 14 17:17 segment_subject_notal
-rwxr-xr-x 1 root wheel 1545 May 14 17:17 segment_subject_notal2
-rwxr-xr-x 1 root wheel 1516 May 14 17:17 segment_subject_old_skull_strip
-rwxr-xr-x 1 root wheel 1585 May 14 17:17 segment_subject_sc
-rwxr-xr-x 1 root wheel 1599 May 14 17:17 segment_subject_talmgh
-rwxr-xr-x 1 root wheel 3330 May 14 17:17 setlabelstat
-rwxr-xr-x 1 root wheel 10224 May 14 17:17 sfa2fieldsign
-rwxr-xr-x 1 root wheel 774 May 14 17:17 show_tal
-rwxr-xr-x 1 root wheel 220 May 14 17:17 skip_long_make_checks
-rwxr-xr-x 1 root wheel 8771600 May 14 17:17 slicetimer.fsl
-rwxr-xr-x 1 root wheel 707 May 14 17:17 sphere_subject
-rwxr-xr-x 1 root wheel 882 May 14 17:17 sphere_subject-lh
-rwxr-xr-x 1 root wheel 881 May 14 17:17 sphere_subject-rh
-rwxr-xr-x 1 root wheel 6558884 May 14 17:17 spherical_stats
-rwxr-xr-x 1 root wheel 1802 May 14 17:17 spm_t_to_b
-rwxr-xr-x 1 root wheel 5922 May 14 17:17 spmmat2register
-rwxr-xr-x 1 root wheel 21612 May 14 17:17 spmregister
-rwxr-xr-x 1 root wheel 2455 May 14 17:17 sratio
-rwxr-xr-x 1 root wheel 6554748 May 14 17:17 stat_normalize
-rwxr-xr-x 1 root wheel 1829 May 14 17:17 stem2fname
-rwxr-xr-x 1 root wheel 8756 May 14 17:17 stim_polar
-rwxr-xr-x 1 root wheel 556 May 14 17:17 subject_info.py
-rwxr-xr-x 1 root wheel 10583672 May 14 17:17 surf2vol
-rwxr-xr-x 1 root wheel 7698 May 14 17:17 surfreg
-rwxr-xr-x 1 root wheel 1494 May 14 17:17 t4img_4dfp
-rwxr-xr-x 1 root wheel 265468 May 14 17:17 t4imgs_4dfp
-rwxr-xr-x 1 root wheel 1049 May 14 17:17 tal_QC_AZS
-rwxr-xr-x 1 root wheel 856 May 14 17:17 tal_compare
-rwxr-xr-x 1 root wheel 5185 May 14 17:17 talairach
-rwxr-xr-x 1 root wheel 3115 May 14 17:17 talairach2
-rwxr-xr-x 1 root wheel 6835816 May 14 17:17 talairach_afd
-rwxr-xr-x 1 root wheel 5387 May 14 17:17 talairach_avi
-rwxr-xr-x 1 root wheel 1132 May 14 17:17 talairach_mgh
-rwxr-xr-x 1 root wheel 14605 May 14 17:17 talsegprob
-rwxr-xr-x 1 root wheel 2405 May 14 17:17 tcl_setup
-rwxr-xr-x 1 root wheel 10407 May 14 17:17 test_fs_tutorial.csh
-rwxr-xr-x 1 root wheel 25884 May 14 17:17 test_recon-all.csh
-rwxr-xr-x 1 root wheel 668968 May 14 17:17 tetgen
-rwxr-xr-x 1 root wheel 3231 May 14 17:17 thickdiffmap
-rwxr-xr-x 1 root wheel 102 May 14 17:17 tkmedit
-rwxr-xr-x 1 root wheel 8859 May 14 17:17 tkmeditfv
-rwxr-xr-x 1 root wheel 106 May 14 17:17 tkregister2
-rwxr-xr-x 1 root wheel 6493700 May 14 17:17 tkregister2_cmdl
-rwxr-xr-x 1 root wheel 103 May 14 17:17 tksurfer
-rwxr-xr-x 1 root wheel 43553 May 14 17:17 trac-all
-rwxr-xr-x 1 root wheel 26633 May 14 17:17 trac-paths
-rwxr-xr-x 1 root wheel 58360 May 14 17:17 trac-preproc
-rwxr-xr-x 1 root wheel 15106 May 14 17:17 tractstats2table
-rwxr-xr-x 1 root wheel 75180 May 14 17:17 tridec
-rwxr-xr-x 1 root wheel 110675 May 14 17:17 unpack_ima.tcl
-rwxr-xr-x 1 root wheel 45265 May 14 17:17 unpack_ima1.tcl
-rwxr-xr-x 1 root wheel 38901 May 14 17:17 unpack_mnc.tcl
-rwxr-xr-x 1 root wheel 6596 May 14 17:17 unpackimadir
-rwxr-xr-x 1 root wheel 35562 May 14 17:17 unpackimadir2
-rwxr-xr-x 1 root wheel 18546 May 14 17:17 unpackmincdir
-rwxr-xr-x 1 root wheel 145 May 14 17:17 unpacksdcmdir
-rwxr-xr-x 1 root wheel 46836 May 14 17:17 unpacksdcmdir.tcl
-rwxr-xr-x 1 root wheel 4690 May 14 17:17 usbtree
-rwxr-xr-x 1 root wheel 3743 May 14 17:17 vno_match_check
-rwxr-xr-x 1 root wheel 7108540 May 14 17:18 volume_copy_test_cuda
-rwxr-xr-x 1 root wheel 4659 May 14 17:18 vsm-smooth
-rwxr-xr-x 1 root wheel 3339 May 14 17:18 vtk_setup
-rwxr-xr-x 1 root wheel 5376 May 14 17:18 wfilemask
-rwxr-xr-x 1 root wheel 7046 May 14 17:18 wm-anat-snr
-rwxr-xr-x 1 root wheel 2550 May 14 17:18 xfmrot
-rwxr-xr-x 1 root wheel 9128 May 14 17:18 xhemireg
-rwxr-xr-x 1 root wheel 445416 May 14 17:18 xmlToHtml
-rwxr-xr-x 1 root wheel 5265 May 14 17:18 xsanatreg
-rwxr-xr-x 1 root wheel 23032 May 14 17:18 zero_lt_4dfp
----Messaggio originale----
Da: zkaufman@nmr.mgh.harvard.edu
Data: 7-giu-2013 18.02
A: <freesurfer@nmr.mgh.harvard.edu>
Ogg: Re: [Freesurfer] mris resample: Command not found. This error is permanent after new patch download
Stefano, step 4 should be:
"chmod +x $FREESURFER_HOME/bin/mris_resample"
When you do an "ls -l" in the $FREESURFER_HOME/bin directory, you need
to see the to see the x's next to mris_resample just like you do with
all the other files in that directory.
-Zeke
On 06/07/2013 11:49 AM, stdp82@virgilio.it wrote:
> Hi list,
>
> during trac-all -prep I have this error:
>
> MRISregister() return, current seed 0
> writing registered surface to
> /Applications/freesurfer/subjects/subject_prova/Diff03/surf/rh.cvs.tocvs_avg35.sphere.reg...
> expanding nbhd size to 1
> mris_resample: Command not found.
> Darwin iMac
>
> I have performed my analysis by the following steps (as recommended by
> Zeke and Lilla):
>
> 1. download "unKnow" file (7.6 MB) at
> ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/patches/mris_resample
> 2. put file in $FREESURFER/bin/
> 4. chmod +x ~/mris_resample as recommended by Daniel (in the first test
> I did not use this command)
> 5. start trac-all -prep
> 6. ERROR (in inter-reg step)
>
> What's happen?
>
> Thank you very much,
>
>
> Stefano
>
>
> _______________________________________________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
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