Hi Emanuel

can you give us more details. What was your command line? What was the
full job output? What is in the recon-all.log? Does this happen if you
run directly instead of through some type of batch server?

cheers
Bruce
On Wed, 30 Oct
2019, Emanuel Alvaredo wrote:

>
>         External Email - Use Caution        
>
> Hello Developers!
> I am getting the same error in several patients (not all). The common error
> between all of them is this line
>
> Waiting for PID 2778 of (2778 2781) to complete...
> /usr/local/freesurfer/bin/reconbatchjobs: line 81:  2778 Segmentation fault
>      (core dumped) exec $JOB >> $LOG 2>&1
> Waiting for PID 2781 of (2778 2781) to complete...
>
> Any idea? 
>
> Thanks in advance!
>
>
>
> Emanuel
>
>
> On Tue, Oct 1, 2019 at 5:07 PM Emanuel Alvaredo <ealvaredo@gmail.com> wrote:
>
> Hello FreeSurfer Developers,
>
> I am running de following command
> /usr/local/freesurfer/subjects/SOME_SUBJECT
> /usr/local/freesurfer/bin/recon-all
> -s SOME_SUBJECT -i /fleni/patients/KING_LUCAS_JAVIER_25-09-2019/2_COGNITIVO_
> FLENI/4_Accelerated_Ax_IR-FSPGR/i2750291.MRDC.58 -
> all -parallel
> I've searched the list and no similar errors have been reported. Does anyone
>  have any thoughts on how to trouble-shoot this one? Also, Ive attached the
> recon-all.log in case it's of any use.
> I have checked the log but I dont find de cause.
>
> 1) FreeSurfer version:freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb
> 96c
> 2) Platform:Intel(R) Core(TM) i9-9900K CPU @ 3.60GHz
> 3) uname -a: Linux fisicos-ub2 5.0.0-29-generic #31~18.04.1-Ubuntu SMP Thu S
> ep 12 18:29:21 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux
> 4) recon-all.log: see attached
>       Thanks in advance
> Emanuel
>
>
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