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Hello FreeSurfer Developers,
We ran recon-all on a 3D T1-weighted image, by default.
ls *.nii | parallel -–jobs 2 recon-all -s {.} -i {} -all -qcache
Our question is very simple.
How many regions does "aparc+aseg.mgz" and "aparc.DKTatlas+aseg.mgz" and "aparc.a2009s+aseg.mgz" have in each?
We checked the links below. And we
want to renumber the region index from 0 as shown in the photo below.
However, the number of regions varies slightly depending on the subjects (103~106 in
aparc.DKTatlas+aseg.mgz).
Therefore, we want to know the number of regions in three parcellation map.
1) FreeSurfer version: freesurfer-linux-ubuntu20_amd64-7.4.1.tar.gz
2) Linux ~~~ 5.15.0-76-generic #83~20.04.1-Ubuntu SMP Wed Jun 21 20:23:31 UTC 2023 x86_64
x86_64 x86_64 GNU/Linux
Thanks,
Kei