That command works.  Thanks so much, Martin!

Best,
Tricia

From: Martin Reuter <mreuter@nmr.mgh.harvard.edu>
To: Tricia Merkley <tmerkle22@yahoo.com>
Cc: Freesurfer list <freesurfer@nmr.mgh.harvard.edu>
Sent: Thursday, October 3, 2013 9:48 AM
Subject: Re: [Freesurfer] LGI longitudinal data

Hi Tricia,

try
recon-all -long subject001 subject001_base -localGI

Best, Martin

On 09/28/2013 01:53 PM, Tricia Merkley wrote:
Hi,

Is it possible to run the LGI on data that has already been longitudinally processed?

For example, when I try to run:

recon-all -s subject001.long.subject001_base -localGI

I get the following error:

ERROR: Are you trying to run or re-run a longitudinal time point?
       If so, please specify the following parameters:

       \' -long <tpNid> <templateid> \'

       where <tpNid> is the time point id (SAME as cross sectional
       ID) and <templateid> is the ID created in the -base run.
       The directory <tpNid>.long.<templateid> will be created
       automatically or used for output, if it already exists.

This is using v5.1.0, and no, I'm not trying to re-run a longitudinal time point.  Just the LGI. I'd appreciate any suggestions!

Thanks so much,
Tricia


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-- 
Martin Reuter, Ph.D.
Assistant in Neuroscience - Massachusetts General Hospital
Instructor in Neurology   - Harvard Medical School
MGH / HMS / MIT

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