Hi,

After bbregister, I ran mri_label2vol to convert a segmentation file to native functional space

mri_label2vol --seg s01/mri/aseg.mgz --reg reg.dat --subject s01 --o aseg-in-func.nii --temp example_func.nii

Now I would like to check how well the example_func and aseg file align.

I tried this
freeview -v s01/example_func.nii s01/aseg.mgz:colormap=lut:reg=reg.dat

but it does not result in a good alignment

Best regards,

Sam