On Tue, Jul 30, 2013 at 1:32 PM, Louis Nicholas Vinke
<vinke@nmr.mgh.harvard.edu> wrote:
via ftp or file drop:
https://surfer.nmr.mgh.harvard.edu/fswiki/FtpFileExchange
On Tue, 30 Jul 2013, Victor Kovac wrote:
Dear Bruce,
Thank you for your prompt reply. How should I upload the subject to you? The subject with all
subfolders is 270 MB. Is there a specific file I can email you?
Thanks,
Victor
On Tue, Jul 30, 2013 at 12:49 PM, Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote:
Hi victor
If you upload the subject I will take a look. 5.3 may help
Bruce
On Jul 30, 2013, at 1:36 PM, Victor Kovac <kovac081@umn.edu> wrote:
> Dear Freesurfer experts,
>
> I am running recon-all on very atrophied brains with mixed results. Attached is an
image of a brain where segmentation has gone awry. There is no message indicating
talairach failure, and the segmentation appears to need WM and pial edits as well as
the ventricles to be filled, so I am not sure how to proceed.
>
> If you have any recommendations as to how to fix these errors, I would very much
appreciate it -- these data are past their deadline, and I am at a loss.
>
> Thank you!
>
> Sincerely,
> Victor
> <Bad_segmentation.png>
> <recon-all.log>
> _______________________________________________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.