I cannot reproduce this locally. If you still want help, attach logs. You can also try running it with -debug as the first option and capture the copious terminal output.

On 2/6/2024 8:39 AM, Huang, Yujing wrote:

Not sure where this happened. Does it produce any log files that you can share? Maybe both logs with and without the -nomc option.

 

Best,

 

Yujing

 

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of Stefano Delli Pizzi
Sent: Saturday, February 3, 2024 2:33 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] if: Expression Syntax - preproc-sess

 

        External Email - Use Caution        

Hello FreeSurfer Developers,
I'm attempting to run preproc-sess with -nomc option
 
preproc-sess -s subj -surface fsaverage lhrh -fwhm 0 -nomc -mni305 -fsd rest 
-per-run -sliceorder up -force
if: Expression Syntax.
 
This error occurred before to create the file with slice timing correction
 
The error did not occur when I run the preproc-sess command line without the 
-nomc option.
 
I've searched the list and no similar errors have been reported. Does anyone 
have any thoughts on how to trouble-shoot this one?
 
FreeSurfer version: freesurfer-macOS-darwin_x86_64-7.4.1-20230614-7eb8460
Platform: Darwin Kernel Version 21.6.0

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