Sun Jun 13 12:40:16 CEST 2021 cd /mnt/mbServerProjects/SCRATCH/GROUPS/AiDA_HippoSubfields/AiDA_struct/Freesurfer_results/AIDAZ_3097_T1 setenv SUBJECTS_DIR /mnt/mbServerProjects/SCRATCH/GROUPS/AiDA_HippoSubfields/AiDA_struct/Freesurfer_results /mnt/mbServerProjects/HOME/USERS/lea/freesurfer/bin/recon-all -s AIDAZ_3097_T1 -i T1analysis/TNU_AIDAZ_3097_T1_t1_fov_brain.nii.gz -all -3T -mprage -wsatlas subjid AIDAZ_3097_T1 setenv SUBJECTS_DIR /mnt/mbServerProjects/SCRATCH/GROUPS/AiDA_HippoSubfields/AiDA_struct/Freesurfer_results FREESURFER_HOME /mnt/mbServerProjects/HOME/USERS/lea/freesurfer Actual FREESURFER_HOME /mnt/mbServerProjects/HOME/USERS/lea/freesurfer build-stamp.txt: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 Linux mb-kraepelin 5.4.0-73-generic #82~18.04.1-Ubuntu SMP Fri Apr 16 15:10:02 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 65536 kbytes maxproc 514458 maxlocks unlimited maxsignal 514458 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 125G 80G 7.1G 2.1G 37G 41G Swap: 0B 0B 0B ######################################## program versions used 7.1.1 (freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551) 7.1.1 ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:16-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:16-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:16-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:17-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:17-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:17-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:17-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:17-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:17-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:17-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:17-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:17-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:17-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:17-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:17-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:17-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:17-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:17-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:17-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:17-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:17-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:17-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:17-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:17-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:17-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:17-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:17-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:17-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:17-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:17-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:17-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:17-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:17-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:18-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 7.1.1 ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:18-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 7.1.1 ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:18-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:18-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:18-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:18-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:18-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:18-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:18-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:18-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:18-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:18-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:18-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:18-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:18-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:18-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:18-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_label2annot ProgramArguments: mris_label2annot -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:18-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_left_right_register ProgramArguments: mris_left_right_register -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:18-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_place_surface ProgramArguments: mris_place_surface -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:18-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:18-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:18-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:18-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:18-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:18-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:18-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:18-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:18-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:18-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:18-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_motion_correct.fsl 7.1.1 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/06/13-10:40:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-73-generic CompilerName: GCC CompilerVersion: 4.8.5 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ####################################### GCADIR /mnt/mbServerProjects/HOME/USERS/lea/freesurfer/average GCA RB_all_2020-01-02.gca GCASkull RB_all_withskull_2020_01_02.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /mnt/mbServerProjects/HOME/USERS/lea/freesurfer/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### /mnt/mbServerProjects/SCRATCH/GROUPS/AiDA_HippoSubfields/AiDA_struct/Freesurfer_results/AIDAZ_3097_T1 mri_convert /mnt/mbServerProjects/SCRATCH/GROUPS/AiDA_HippoSubfields/AiDA_struct/T1analysis/TNU_AIDAZ_3097_T1_t1_fov_brain.nii.gz /mnt/mbServerProjects/SCRATCH/GROUPS/AiDA_HippoSubfields/AiDA_struct/Freesurfer_results/AIDAZ_3097_T1/mri/orig/001.mgz mri_convert /mnt/mbServerProjects/SCRATCH/GROUPS/AiDA_HippoSubfields/AiDA_struct/T1analysis/TNU_AIDAZ_3097_T1_t1_fov_brain.nii.gz /mnt/mbServerProjects/SCRATCH/GROUPS/AiDA_HippoSubfields/AiDA_struct/Freesurfer_results/AIDAZ_3097_T1/mri/orig/001.mgz reading from /mnt/mbServerProjects/SCRATCH/GROUPS/AiDA_HippoSubfields/AiDA_struct/T1analysis/TNU_AIDAZ_3097_T1_t1_fov_brain.nii.gz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, -0, 0) j_ras = (-0, 1, 0) k_ras = (0, -0, 1) writing to /mnt/mbServerProjects/SCRATCH/GROUPS/AiDA_HippoSubfields/AiDA_struct/Freesurfer_results/AIDAZ_3097_T1/mri/orig/001.mgz... @#@FSTIME 2021:06:13:12:40:19 mri_convert N 2 e 2.02 S 0.02 U 1.89 P 94% M 59196 F 2 R 13496 W 0 c 658 w 17 I 18048 O 17432 L 37.13 37.60 37.19 @#@FSLOADPOST 2021:06:13:12:40:21 mri_convert N 2 36.80 37.52 37.17 #-------------------------------------------- #@# MotionCor Sun Jun 13 12:40:22 CEST 2021 Found 1 runs /mnt/mbServerProjects/SCRATCH/GROUPS/AiDA_HippoSubfields/AiDA_struct/Freesurfer_results/AIDAZ_3097_T1/mri/orig/001.mgz Checking for (invalid) multi-frame inputs... Only one run found so motion correction will not be performed. I'll copy the run to rawavg and continue. cp /mnt/mbServerProjects/SCRATCH/GROUPS/AiDA_HippoSubfields/AiDA_struct/Freesurfer_results/AIDAZ_3097_T1/mri/orig/001.mgz /mnt/mbServerProjects/SCRATCH/GROUPS/AiDA_HippoSubfields/AiDA_struct/Freesurfer_results/AIDAZ_3097_T1/mri/rawavg.mgz /mnt/mbServerProjects/SCRATCH/GROUPS/AiDA_HippoSubfields/AiDA_struct/Freesurfer_results/AIDAZ_3097_T1 mri_convert /mnt/mbServerProjects/SCRATCH/GROUPS/AiDA_HippoSubfields/AiDA_struct/Freesurfer_results/AIDAZ_3097_T1/mri/rawavg.mgz /mnt/mbServerProjects/SCRATCH/GROUPS/AiDA_HippoSubfields/AiDA_struct/Freesurfer_results/AIDAZ_3097_T1/mri/orig.mgz --conform mri_convert /mnt/mbServerProjects/SCRATCH/GROUPS/AiDA_HippoSubfields/AiDA_struct/Freesurfer_results/AIDAZ_3097_T1/mri/rawavg.mgz /mnt/mbServerProjects/SCRATCH/GROUPS/AiDA_HippoSubfields/AiDA_struct/Freesurfer_results/AIDAZ_3097_T1/mri/orig.mgz --conform reading from /mnt/mbServerProjects/SCRATCH/GROUPS/AiDA_HippoSubfields/AiDA_struct/Freesurfer_results/AIDAZ_3097_T1/mri/rawavg.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, -0, 0) j_ras = (-0, 1, 0) k_ras = (0, -0, 1) changing data type from float to uchar (noscale = 0)... MRIchangeType: Building histogram 0 77364.1 1000, flo=0, fhi=0.999, dest_type=0 Reslicing using trilinear interpolation writing to /mnt/mbServerProjects/SCRATCH/GROUPS/AiDA_HippoSubfields/AiDA_struct/Freesurfer_results/AIDAZ_3097_T1/mri/orig.mgz... @#@FSTIME 2021:06:13:12:40:26 mri_convert N 3 e 9.61 S 0.31 U 9.24 P 99% M 72316 F 0 R 25086 W 0 c 1061 w 65 I 0 O 2960 L 36.80 37.52 37.17 @#@FSLOADPOST 2021:06:13:12:40:35 mri_convert N 3 36.66 37.47 37.15 mri_add_xform_to_header -c /mnt/mbServerProjects/SCRATCH/GROUPS/AiDA_HippoSubfields/AiDA_struct/Freesurfer_results/AIDAZ_3097_T1/mri/transforms/talairach.xfm /mnt/mbServerProjects/SCRATCH/GROUPS/AiDA_HippoSubfields/AiDA_struct/Freesurfer_results/AIDAZ_3097_T1/mri/orig.mgz /mnt/mbServerProjects/SCRATCH/GROUPS/AiDA_HippoSubfields/AiDA_struct/Freesurfer_results/AIDAZ_3097_T1/mri/orig.mgz INFO: extension is mgz @#@FSTIME 2021:06:13:12:40:35 mri_add_xform_to_header N 4 e 1.68 S 0.02 U 1.55 P 94% M 23140 F 14 R 4585 W 0 c 732 w 38 I 3128 O 2960 L 36.66 37.47 37.15 @#@FSLOADPOST 2021:06:13:12:40:37 mri_add_xform_to_header N 4 36.76 37.48 37.16 #-------------------------------------------- #@# Talairach Sun Jun 13 12:40:37 CEST 2021 /mnt/mbServerProjects/SCRATCH/GROUPS/AiDA_HippoSubfields/AiDA_struct/Freesurfer_results/AIDAZ_3097_T1/mri mri_nu_correct.mni --no-rescale --i orig.mgz --o orig_nu.mgz --ants-n4 --n 1 --proto-iters 1000 --distance 50 /usr/bin/bc /mnt/mbServerProjects/SCRATCH/GROUPS/AiDA_HippoSubfields/AiDA_struct/Freesurfer_results/AIDAZ_3097_T1/mri /mnt/mbServerProjects/HOME/USERS/lea/freesurfer/bin/mri_nu_correct.mni --no-rescale --i orig.mgz --o orig_nu.mgz --ants-n4 --n 1 --proto-iters 1000 --distance 50 nIters 1 mri_nu_correct.mni 7.1.1 Linux mb-kraepelin 5.4.0-73-generic #82~18.04.1-Ubuntu SMP Fri Apr 16 15:10:02 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux Sun Jun 13 12:40:37 CEST 2021 Found /dev/shm , will use for temp dir tmpdir is /dev/shm/tmp.mri_nu_correct.mni.1784698 cd /mnt/mbServerProjects/SCRATCH/GROUPS/AiDA_HippoSubfields/AiDA_struct/Freesurfer_results/AIDAZ_3097_T1/mri AntsN4BiasFieldCorrectionFs -i orig.mgz -o /dev/shm/tmp.mri_nu_correct.mni.1784698/nu0.mgz Using shrink factor: 4 mri_convert /dev/shm/tmp.mri_nu_correct.mni.1784698/nu0.mgz orig_nu.mgz --like orig.mgz --conform mri_convert /dev/shm/tmp.mri_nu_correct.mni.1784698/nu0.mgz orig_nu.mgz --like orig.mgz --conform reading from /dev/shm/tmp.mri_nu_correct.mni.1784698/nu0.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) INFO: transform src into the like-volume: orig.mgz writing to orig_nu.mgz... Sun Jun 13 12:44:44 CEST 2021 mri_nu_correct.mni done @#@FSTIME 2021:06:13:12:40:37 mri_nu_correct.mni N 12 e 247.00 S 0.83 U 244.75 P 99% M 490472 F 32 R 146931 W 0 c 34318 w 413 I 11024 O 3064 L 36.76 37.48 37.16 @#@FSLOADPOST 2021:06:13:12:44:44 mri_nu_correct.mni N 12 38.56 38.04 37.45 talairach_avi --i orig_nu.mgz --xfm transforms/talairach.auto.xfm --atlas 3T18yoSchwartzReactN32_as_orig talairach_avi log file is transforms/talairach_avi.log... Started at Sun Jun 13 12:44:44 CEST 2021 Ended at Sun Jun 13 12:45:17 CEST 2021 talairach_avi done @#@FSTIME 2021:06:13:12:44:44 talairach_avi N 6 e 32.20 S 1.50 U 21.41 P 71% M 255748 F 58 R 395987 W 0 c 15294 w 5200 I 544512 O 296168 L 38.56 38.04 37.45 @#@FSLOADPOST 2021:06:13:12:45:17 talairach_avi N 6 37.54 37.85 37.41 cp transforms/talairach.auto.xfm transforms/talairach.xfm lta_convert --src orig.mgz --trg /mnt/mbServerProjects/HOME/USERS/lea/freesurfer/average/mni305.cor.mgz --inxfm transforms/talairach.xfm --outlta transforms/talairach.xfm.lta --subject fsaverage --ltavox2vox 7.1.1 --src: orig.mgz src image (geometry). --trg: /mnt/mbServerProjects/HOME/USERS/lea/freesurfer/average/mni305.cor.mgz trg image (geometry). --inmni: transforms/talairach.xfm input MNI/XFM transform. --outlta: transforms/talairach.xfm.lta output LTA. --s: fsaverage subject name --ltavox2vox: output LTA as VOX_TO_VOX transform. LTA read, type : 1 1.12304 0.02599 0.02127 1.63992; -0.05420 1.03426 0.15835 -9.78120; -0.02091 -0.09920 1.18858 -24.75929; 0.00000 0.00000 0.00000 1.00000; setting subject to fsaverage Writing LTA to file transforms/talairach.xfm.lta... lta_convert successful. #-------------------------------------------- #@# Talairach Failure Detection Sun Jun 13 12:45:19 CEST 2021 /mnt/mbServerProjects/SCRATCH/GROUPS/AiDA_HippoSubfields/AiDA_struct/Freesurfer_results/AIDAZ_3097_T1/mri talairach_afd -T 0.005 -xfm transforms/talairach.xfm talairach_afd: Talairach Transform: transforms/talairach.xfm OK (p=0.8110, pval=0.8469 >= threshold=0.0050) @#@FSTIME 2021:06:13:12:45:19 talairach_afd N 4 e 0.06 S 0.00 U 0.00 P 9% M 5436 F 10 R 207 W 0 c 7 w 35 I 2504 O 0 L 37.54 37.85 37.41 @#@FSLOADPOST 2021:06:13:12:45:19 talairach_afd N 4 37.54 37.85 37.41 awk -f /mnt/mbServerProjects/HOME/USERS/lea/freesurfer/bin/extract_talairach_avi_QA.awk /mnt/mbServerProjects/SCRATCH/GROUPS/AiDA_HippoSubfields/AiDA_struct/Freesurfer_results/AIDAZ_3097_T1/mri/transforms/talairach_avi.log tal_QC_AZS /mnt/mbServerProjects/SCRATCH/GROUPS/AiDA_HippoSubfields/AiDA_struct/Freesurfer_results/AIDAZ_3097_T1/mri/transforms/talairach_avi.log TalAviQA: 0.96928 z-score: -2 #-------------------------------------------- #@# Nu Intensity Correction Sun Jun 13 12:45:19 CEST 2021 mri_nu_correct.mni --i orig.mgz --o nu.mgz --uchar transforms/talairach.xfm --proto-iters 1000 --distance 50 --n 1 --ants-n4 /usr/bin/bc /mnt/mbServerProjects/SCRATCH/GROUPS/AiDA_HippoSubfields/AiDA_struct/Freesurfer_results/AIDAZ_3097_T1/mri /mnt/mbServerProjects/HOME/USERS/lea/freesurfer/bin/mri_nu_correct.mni --i orig.mgz --o nu.mgz --uchar transforms/talairach.xfm --proto-iters 1000 --distance 50 --n 1 --ants-n4 nIters 1 mri_nu_correct.mni 7.1.1 Linux mb-kraepelin 5.4.0-73-generic #82~18.04.1-Ubuntu SMP Fri Apr 16 15:10:02 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux Sun Jun 13 12:45:20 CEST 2021 Found /dev/shm , will use for temp dir tmpdir is /dev/shm/tmp.mri_nu_correct.mni.1786171 cd /mnt/mbServerProjects/SCRATCH/GROUPS/AiDA_HippoSubfields/AiDA_struct/Freesurfer_results/AIDAZ_3097_T1/mri AntsN4BiasFieldCorrectionFs -i orig.mgz -o /dev/shm/tmp.mri_nu_correct.mni.1786171/nu0.mgz Using shrink factor: 4 mri_binarize --i /dev/shm/tmp.mri_nu_correct.mni.1786171/nu0.mgz --min -1 --o /dev/shm/tmp.mri_nu_correct.mni.1786171/ones.mgz 7.1.1 cwd /mnt/mbServerProjects/SCRATCH/GROUPS/AiDA_HippoSubfields/AiDA_struct/Freesurfer_results/AIDAZ_3097_T1/mri cmdline mri_binarize --i /dev/shm/tmp.mri_nu_correct.mni.1786171/nu0.mgz --min -1 --o /dev/shm/tmp.mri_nu_correct.mni.1786171/ones.mgz sysname Linux hostname mb-kraepelin machine x86_64 user ewahelene input /dev/shm/tmp.mri_nu_correct.mni.1786171/nu0.mgz frame 0 nErode3d 0 nErode2d 0 output /dev/shm/tmp.mri_nu_correct.mni.1786171/ones.mgz Binarizing based on threshold min -1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 16777216 values in range Counting number of voxels in first frame Found 16777215 voxels in final mask Count: 16777215 16777215.000000 16777216 99.999994 mri_binarize done mri_segstats --id 1 --seg /dev/shm/tmp.mri_nu_correct.mni.1786171/ones.mgz --i orig.mgz --sum /dev/shm/tmp.mri_nu_correct.mni.1786171/sum.junk --avgwf /dev/shm/tmp.mri_nu_correct.mni.1786171/input.mean.dat 7.1.1 cwd cmdline mri_segstats --id 1 --seg /dev/shm/tmp.mri_nu_correct.mni.1786171/ones.mgz --i orig.mgz --sum /dev/shm/tmp.mri_nu_correct.mni.1786171/sum.junk --avgwf /dev/shm/tmp.mri_nu_correct.mni.1786171/input.mean.dat sysname Linux hostname mb-kraepelin machine x86_64 user ewahelene whitesurfname white UseRobust 0 Loading /dev/shm/tmp.mri_nu_correct.mni.1786171/ones.mgz Loading orig.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 1 segmentations Computing statistics for each segmentation Reporting on 1 segmentations Using PrintSegStat Computing spatial average of each frame 0 Writing to /dev/shm/tmp.mri_nu_correct.mni.1786171/input.mean.dat mri_segstats done mri_segstats --id 1 --seg /dev/shm/tmp.mri_nu_correct.mni.1786171/ones.mgz --i /dev/shm/tmp.mri_nu_correct.mni.1786171/nu0.mgz --sum /dev/shm/tmp.mri_nu_correct.mni.1786171/sum.junk --avgwf /dev/shm/tmp.mri_nu_correct.mni.1786171/output.mean.dat 7.1.1 cwd cmdline mri_segstats --id 1 --seg /dev/shm/tmp.mri_nu_correct.mni.1786171/ones.mgz --i /dev/shm/tmp.mri_nu_correct.mni.1786171/nu0.mgz --sum /dev/shm/tmp.mri_nu_correct.mni.1786171/sum.junk --avgwf /dev/shm/tmp.mri_nu_correct.mni.1786171/output.mean.dat sysname Linux hostname mb-kraepelin machine x86_64 user ewahelene whitesurfname white UseRobust 0 Loading /dev/shm/tmp.mri_nu_correct.mni.1786171/ones.mgz Loading /dev/shm/tmp.mri_nu_correct.mni.1786171/nu0.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 1 segmentations Computing statistics for each segmentation Reporting on 1 segmentations Using PrintSegStat Computing spatial average of each frame 0 Writing to /dev/shm/tmp.mri_nu_correct.mni.1786171/output.mean.dat mri_segstats done mris_calc -o /dev/shm/tmp.mri_nu_correct.mni.1786171/nu0.mgz /dev/shm/tmp.mri_nu_correct.mni.1786171/nu0.mgz mul .92572200492178568363 Saving result to '/dev/shm/tmp.mri_nu_correct.mni.1786171/nu0.mgz' (type = MGH ) [ ok ] mri_convert /dev/shm/tmp.mri_nu_correct.mni.1786171/nu0.mgz nu.mgz --like orig.mgz mri_convert /dev/shm/tmp.mri_nu_correct.mni.1786171/nu0.mgz nu.mgz --like orig.mgz reading from /dev/shm/tmp.mri_nu_correct.mni.1786171/nu0.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) INFO: transform src into the like-volume: orig.mgz writing to nu.mgz... mri_make_uchar nu.mgz transforms/talairach.xfm nu.mgz type change took 0 minutes and 9 seconds. mapping (33, 234) to ( 3, 110) Sun Jun 13 12:50:04 CEST 2021 mri_nu_correct.mni done @#@FSTIME 2021:06:13:12:45:19 mri_nu_correct.mni N 13 e 284.98 S 3.69 U 279.32 P 99% M 614156 F 33 R 513817 W 0 c 45523 w 493 I 7520 O 10024 L 37.54 37.85 37.41 @#@FSLOADPOST 2021:06:13:12:50:04 mri_nu_correct.mni N 13 36.39 37.13 37.23 mri_add_xform_to_header -c /mnt/mbServerProjects/SCRATCH/GROUPS/AiDA_HippoSubfields/AiDA_struct/Freesurfer_results/AIDAZ_3097_T1/mri/transforms/talairach.xfm nu.mgz nu.mgz INFO: extension is mgz @#@FSTIME 2021:06:13:12:50:05 mri_add_xform_to_header N 4 e 1.18 S 0.01 U 1.08 P 92% M 23308 F 1 R 4595 W 0 c 134 w 100 I 256 O 2376 L 36.39 37.13 37.23 @#@FSLOADPOST 2021:06:13:12:50:06 mri_add_xform_to_header N 4 36.39 37.13 37.23 #-------------------------------------------- #@# Intensity Normalization Sun Jun 13 12:50:06 CEST 2021 /mnt/mbServerProjects/SCRATCH/GROUPS/AiDA_HippoSubfields/AiDA_struct/Freesurfer_results/AIDAZ_3097_T1/mri mri_normalize -g 1 -seed 1234 -mprage nu.mgz T1.mgz using max gradient = 1.000 setting seed for random number genererator to 1234 assuming input volume is MGH (Van der Kouwe) MP-RAGE reading mri_src from nu.mgz... normalizing image... talairach transform 1.12304 0.02599 0.02127 1.63992; -0.05420 1.03426 0.15835 -9.78120; -0.02091 -0.09920 1.18858 -24.75929; 0.00000 0.00000 0.00000 1.00000; processing without aseg, no1d=0 MRInormInit(): INFO: Modifying talairach volume c_(r,a,s) based on average_305 MRInormalize(): MRIsplineNormalize(): npeaks = 6 Starting OpenSpline(): npoints = 6 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Iterating 2 times --------------------------------- 3d normalization pass 1 of 2 error: No such file or directory error: MRInormFindControlPoints: could not find enough control points error: No such file or directory error: MRInormFindControlPoints failed Command exited with non-zero status 253 @#@FSTIME 2021:06:13:12:50:06 mri_normalize N 7 e 15.13 S 0.36 U 14.64 P 99% M 436196 F 3 R 144513 W 0 c 1698 w 13 I 1016 O 0 L 36.39 37.13 37.23 @#@FSLOADPOST 2021:06:13:12:50:21 mri_normalize N 7 36.31 37.07 37.21 Linux mb-kraepelin 5.4.0-73-generic #82~18.04.1-Ubuntu SMP Fri Apr 16 15:10:02 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux recon-all -s AIDAZ_3097_T1 exited with ERRORS at Sun Jun 13 12:50:21 CEST 2021 To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting #New# invocation of recon-all Sat Oct 16 16:08:52 CEST 2021 cd /mnt/mbServerProjects/SCRATCH/GROUPS/AiDA_HippoSubfields/AiDA_struct/Freesurfer_results/AIDAZ_3097_T1 setenv SUBJECTS_DIR /mnt/mbServerProjects/SCRATCH/GROUPS/AiDA_HippoSubfields/AiDA_struct/Freesurfer_results /mnt/mbServerProjects/HOME/USERS/lea/freesurfer/bin/recon-all -autorecon-pial -subjid AIDAZ_3097_T1 subjid AIDAZ_3097_T1 setenv SUBJECTS_DIR /mnt/mbServerProjects/SCRATCH/GROUPS/AiDA_HippoSubfields/AiDA_struct/Freesurfer_results FREESURFER_HOME /mnt/mbServerProjects/HOME/USERS/lea/freesurfer Actual FREESURFER_HOME /mnt/mbServerProjects/HOME/USERS/lea/freesurfer build-stamp.txt: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 Linux mb-kraepelin 5.4.0-77-generic #86~18.04.1-Ubuntu SMP Fri Jun 18 01:23:22 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 65536 kbytes maxproc 514409 maxlocks unlimited maxsignal 514409 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 125G 21G 16G 1.4G 88G 101G Swap: 0B 0B 0B ######################################## program versions used 7.1.1 (freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551) 7.1.1 ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:52-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:52-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:52-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:52-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:52-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:52-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:52-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:52-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:52-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:52-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:52-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:52-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:52-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:52-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:52-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:52-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:52-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:52-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:52-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:52-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:52-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:52-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:52-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:52-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:52-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:52-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:52-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:52-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:52-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:52-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:52-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:52-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:52-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:52-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 7.1.1 ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:52-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 7.1.1 ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:52-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:52-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:52-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:52-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:52-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:52-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:52-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:52-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:52-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:52-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:52-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:52-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:52-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:52-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:52-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_label2annot ProgramArguments: mris_label2annot -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:52-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_left_right_register ProgramArguments: mris_left_right_register -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:52-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_place_surface ProgramArguments: mris_place_surface -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:52-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:52-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:52-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:52-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:52-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:52-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:52-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:52-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:53-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:53-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:53-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:53-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:53-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:53-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:53-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:53-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:53-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:53-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:53-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:53-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_motion_correct.fsl 7.1.1 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/10/16-14:08:53-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: ewahelene Machine: mb-kraepelin Platform: Linux PlatformVersion: 5.4.0-77-generic CompilerName: GCC CompilerVersion: 4.8.5 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ####################################### GCADIR /mnt/mbServerProjects/HOME/USERS/lea/freesurfer/average GCA RB_all_2020-01-02.gca GCASkull RB_all_withskull_2020_01_02.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /mnt/mbServerProjects/HOME/USERS/lea/freesurfer/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### #-------------------------------------------- #@# Mask BFS Sat Oct 16 16:08:53 CEST 2021 /mnt/mbServerProjects/SCRATCH/GROUPS/AiDA_HippoSubfields/AiDA_struct/Freesurfer_results/AIDAZ_3097_T1/mri mri_mask -T 5 brain.mgz brainmask.mgz brain.finalsurfs.mgz threshold mask volume at 5 error: mghRead(/mnt/mbServerProjects/SCRATCH/GROUPS/AiDA_HippoSubfields/AiDA_struct/Freesurfer_results/AIDAZ_3097_T1/mri/brain.mgz, -1): could not open file error: mri_mask: could not read source volume brain.mgz Command exited with non-zero status 252 @#@FSTIME 2021:10:16:16:08:53 mri_mask N 5 e 0.00 S 0.00 U 0.00 P 60% M 6044 F 0 R 256 W 0 c 1 w 16 I 0 O 0 L 35.27 35.42 35.52 @#@FSLOADPOST 2021:10:16:16:08:53 mri_mask N 5 35.27 35.42 35.52 Linux mb-kraepelin 5.4.0-77-generic #86~18.04.1-Ubuntu SMP Fri Jun 18 01:23:22 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux recon-all -s AIDAZ_3097_T1 exited with ERRORS at Sat Oct 16 16:08:53 CEST 2021 To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting