Fri Aug 9 11:43:07 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree /usr/local/freesurfer/bin/trac-all -c traculatest.txt -prep -log trac_from_fsleddy Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.3.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buffers cached Mem: 65903240 22657196 43246044 0 580108 17899416 -/+ buffers/cache: 4177672 61725568 Swap: 67032060 968264 66063796 ######################################## Program versions: $Id: trac-all,v 1.22.2.12 2013/02/23 02:01:02 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/09-10:43:08-GMT BuildTimeStamp: May 13 2013 18:45:07 CVS: $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49.2.3 2013/03/25 18:04:53 greve Exp $ $Id: mri_cvs_register,v 1.15.2.12 2013/02/09 00:37:37 nicks Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/09-10:43:08-GMT BuildTimeStamp: May 13 2013 18:45:07 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/09-10:43:08-GMT BuildTimeStamp: May 13 2013 18:45:07 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/09-10:43:08-GMT BuildTimeStamp: May 13 2013 18:45:07 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/09-10:43:08-GMT BuildTimeStamp: May 13 2013 18:45:07 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 New invocation of trac-preproc dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buffers cached Mem: 65903240 22657948 43245292 0 580108 17899416 -/+ buffers/cache: 4178424 61724816 Swap: 67032060 968264 66063796 #------------------------------------- /usr/local/freesurfer/bin/trac-preproc #------------------------------------- #@# Image corrections Fri Aug 9 11:43:08 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bedpout.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bedpout.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bedpout.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0.989285, 0.145998) k_ras = (0, -0.145998, 0.989285) writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz... cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz INFO: input image orientation is LAS INFO: input image determinant is -12.5224 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz x y z /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz INFO: found /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals, converting to FSL format INFO: found /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs, converting to FSL format mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz ln -sf /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/data.nii.gz mri_convert --frame 0 /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_frame0.nii.gz mri_convert --frame 0 /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_frame0.nii.gz $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0.989285, 0.145998) k_ras = (0, -0.145998, 0.989285) keeping frame 0 writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_frame0.nii.gz... mri_concat --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_frame0.nii.gz --mean --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz ninputs = 1 Checking inputs nframestot = 1 Allocing output Done allocing nframes = 1 Computing mean across frames Writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3 mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff #------------------------------------- #@# Intra-subject registration Fri Aug 9 11:43:29 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz... flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: target does not conform to COR format, so I'm going to reslice to COR. This will not affect the final registration. Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz Tmov: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; --------------------------------------- ---- Input registration matrix -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; Determinant 1 subject = subject-unknown RegMat --------------------------- 1.000 0.000 0.000 0.000; 0.000 0.000 -1.000 0.000; 0.000 1.000 0.000 1.000; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -1, ref det = -1 convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat Log file is /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.bbr.dat.log Fri Aug 9 11:43:31 BST 2013 setenv SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui cd /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree /usr/local/freesurfer/bin/bbregister --s 02ST --init-fsl --dti --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.bbr.dat --fslmat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.bbr.mat $Id: bbregister,v 1.49.2.3 2013/03/25 18:04:53 greve Exp $ Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux FREESURFER_HOME /usr/local/freesurfer mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/tmp.bbregister.386/template.nii mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/tmp.bbregister.386/template.nii $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0.989285, 0.145998) k_ras = (0, -0.145998, 0.989285) writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/tmp.bbregister.386/template.nii... fslregister --s 02ST --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/tmp.bbregister.386/template.nii --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/tmp.bbregister.386/reg.init.dat --niters 1 --maxangle 90 --nobetmov --tmp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/tmp.bbregister.386/fslregister --dof 6 --fsvol brainmask.mgz Log file is /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/tmp.bbregister.386/reg.init.dat.fslregister.log Fri Aug 9 11:43:33 BST 2013 --s 02ST --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/tmp.bbregister.386/template.nii --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/tmp.bbregister.386/reg.init.dat --niters 1 --maxangle 90 --nobetmov --tmp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/tmp.bbregister.386/fslregister --dof 6 --fsvol brainmask.mgz $Id: fslregister,v 1.34.2.2 2012/11/08 16:18:56 greve Exp $ wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux nIters 1 -------------------------------------- /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brainmask.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/tmp.bbregister.386/fslregister/refvol.fslregister.nii mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brainmask.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/tmp.bbregister.386/fslregister/refvol.fslregister.nii $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brainmask.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/tmp.bbregister.386/fslregister/refvol.fslregister.nii... -------------------------------------- /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/tmp.bbregister.386/template.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/tmp.bbregister.386/fslregister/movvol.fslregister.nii --frame 0 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/tmp.bbregister.386/template.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/tmp.bbregister.386/fslregister/movvol.fslregister.nii --frame 0 $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/tmp.bbregister.386/template.nii... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0.989285, 0.145998) k_ras = (0, -0.145998, 0.989285) keeping frame 0 writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/tmp.bbregister.386/fslregister/movvol.fslregister.nii... Mov determinant is -12.5224 /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree tkregister2_cmdl --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/tmp.bbregister.386/fslregister/movvol.fslregister.nii --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/tmp.bbregister.386/fslregister/reg0.422.dat --regheader --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/tmp.bbregister.386/reg.init.dat.fsl.mat0 --s 02ST --noedit tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/tmp.bbregister.386/fslregister/movvol.fslregister.nii reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/tmp.bbregister.386/fslregister/reg0.422.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/orig.mgz Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/tmp.bbregister.386/fslregister/movvol.fslregister.nii Tmov: -------------------- -2.333 0.000 0.000 112.000; 0.000 0.000 2.300 -52.901; 0.000 -2.333 0.000 112.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 0.000 0.000 3.591; 0.000 -0.146 0.989 -32.317; 0.000 -0.989 -0.146 -1.084; 0.000 0.000 0.000 1.000; --------------------------------------- ---- Input registration matrix -------- 1.000 0.000 0.000 3.591; 0.000 -0.146 0.989 -32.317; 0.000 -0.989 -0.146 -1.084; 0.000 0.000 0.000 1.000; Determinant 1 subject = 02ST RegMat --------------------------- 1.000 0.000 0.000 3.591; 0.000 -0.146 0.989 -32.317; 0.000 -0.989 -0.146 -1.084; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI tkreg2FSL: mov det = -12.5224, ref det = -1 Fri Aug 9 11:43:37 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree flirt.fsl -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/tmp.bbregister.386/fslregister/refvol.fslregister.nii -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/tmp.bbregister.386/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/tmp.bbregister.386/fslregister/fslmat0.trans.mat -schedule /usr/share/fsl/5.0/etc/flirtsch/xyztrans.sch -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/tmp.bbregister.386/reg.init.dat.fsl.mat0 Fri Aug 9 11:43:41 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree flirt.fsl -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/tmp.bbregister.386/fslregister/refvol.fslregister.nii -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/tmp.bbregister.386/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/tmp.bbregister.386/reg.init.dat.fsl.mat -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/tmp.bbregister.386/fslregister/fslmat0.trans.mat -schedule /usr/local/freesurfer/bin/flirt.newdefault.20080811.sch tkregister2_cmdl --s 02ST --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/tmp.bbregister.386/template.nii --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/tmp.bbregister.386/reg.init.dat --fslreg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/tmp.bbregister.386/reg.init.dat.fsl.mat --noedit tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl ---- FSL registration matrix -------- 1.000 0.001 0.010 19.610; 0.010 -0.148 -0.989 165.000; 0.001 0.989 -0.148 19.664; 0.000 0.000 0.000 1.000; --------------------------------------- INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/tmp.bbregister.386/template.nii reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/tmp.bbregister.386/reg.init.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/orig.mgz Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/tmp.bbregister.386/template.nii Tmov: -------------------- -2.333 0.000 0.000 112.000; 0.000 0.000 2.300 -52.901; 0.000 -2.333 0.000 112.000; 0.000 0.000 0.000 1.000; mkheaderreg = 0, float2int = 0 FSLOUTPUTTYPE NIFTI fsl2TkReg: mov det = -12.5224, ref det = -1 ---- Input registration matrix (computed) -------- 1.000 -0.001 0.010 3.886; -0.010 -0.148 0.989 -31.336; 0.001 -0.989 -0.148 -0.695; 0.000 0.000 0.000 1.000; --------------------------------------- ---- Input registration matrix -------- 1.000 -0.001 0.010 3.886; -0.010 -0.148 0.989 -31.336; 0.001 -0.989 -0.148 -0.695; 0.000 0.000 0.000 1.000; Determinant 1 subject = 02ST RegMat --------------------------- 1.000 -0.001 0.010 3.886; -0.010 -0.148 0.989 -31.336; 0.001 -0.989 -0.148 -0.695; 0.000 0.000 0.000 1.000; (standard_in) 1: illegal character: S (standard_in) 1: illegal character: T Started at Fri Aug 9 11:43:33 BST 2013 Ended at Fri Aug 9 11:43:48 BST 2013 fslregister Done To check results, run: tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/tmp.bbregister.386/template.nii --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/tmp.bbregister.386/reg.init.dat --surf orig mri_segreg --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/tmp.bbregister.386/template.nii --init-reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/tmp.bbregister.386/reg.init.dat --out-reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/tmp.bbregister.386/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5 $Id: mri_segreg.c,v 1.103.2.1 2011/10/07 19:14:42 greve Exp $ setenv SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui cd /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree mri_segreg --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/tmp.bbregister.386/template.nii --init-reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/tmp.bbregister.386/reg.init.dat --out-reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/tmp.bbregister.386/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5 sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto movvol /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/tmp.bbregister.386/template.nii regfile /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/tmp.bbregister.386/reg.init.dat subject 02ST dof 6 outregfile /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/tmp.bbregister.386/bbr.pass1.dat UseMask 0 UseLH 1 UseRH 1 nsubsamp 100 PenaltySign -1 PenaltySlope 0.500000 PenaltyCenter 0.000000 surfname white GMProjFrac 0.500000 WMProjAbs 2.000000 lhcostfile (null) rhcostfile (null) interp trilinear (1) frame 0 TolPowell 0.000100 nMaxItersPowell 36 n1dmin 3 Profile 0 Gdiag_no -1 AddNoise 0 (0) SynthSeed 1376803555 TransRandMax 0.000000 RotRandMax 0.000000 Translations 0.000000 0.000000 0.000000 Rotations 0.000000 0.000000 0.000000 Input reg 1.000 -0.001 0.010 3.886; -0.010 -0.148 0.989 -31.336; 0.001 -0.989 -0.148 -0.695; 0.000 0.000 0.000 1.000; Loading mov Extracting frame 0 Projecting LH Surfs Loading lh.white surf Loading lh.thickness for GM GM Proj: 1 0.500000 2.000000 WM Proj: 0 0.500000 2.000000 Projecting RH Surfs Loading rh.white surf Loading rh.thickness Projecting RH Surfs Computing relative cost 0 -25.0 -25.0 -25.0 0.997964 1 -25.0 -25.0 25.0 1.042894 2 -25.0 25.0 -25.0 0.980828 3 -25.0 25.0 25.0 0.997045 4 25.0 -25.0 -25.0 1.024571 5 25.0 -25.0 25.0 1.019086 6 25.0 25.0 -25.0 0.994014 7 25.0 25.0 25.0 1.031378 REL: 8 0.447255 8.087779 1.010972 rel = 0.442401 Initial costs ---------------- Number of surface hits 2775 WM Intensity 295.9937 +/- 66.8250 Ctx Intensity 343.1900 +/- 85.6151 Pct Contrast 13.8472 +/- 21.3946 Cost 0.4473 RelCost 0.4424 ------------------------------------ Brute force preopt -4 4 4, n = 729 0 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 0.9871 0.9871 0.0 1 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 0.0000 0.9556 0.9556 0.0 2 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 4.0000 0.8683 0.8683 0.0 7 -4.0000 -4.0000 -4.0000 -4.0000 4.0000 0.0000 0.8657 0.8657 0.0 10 -4.0000 -4.0000 -4.0000 0.0000 -4.0000 0.0000 0.8605 0.8605 0.0 11 -4.0000 -4.0000 -4.0000 0.0000 -4.0000 4.0000 0.8224 0.8224 0.0 34 -4.0000 -4.0000 0.0000 -4.0000 4.0000 0.0000 0.7914 0.7914 0.0 37 -4.0000 -4.0000 0.0000 0.0000 -4.0000 0.0000 0.7575 0.7575 0.0 46 -4.0000 -4.0000 0.0000 4.0000 -4.0000 0.0000 0.7525 0.7525 0.0 118 -4.0000 0.0000 0.0000 0.0000 -4.0000 0.0000 0.7450 0.7450 0.0 121 -4.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.7412 0.7412 0.0 274 0.0000 -4.0000 0.0000 -4.0000 0.0000 0.0000 0.6492 0.6492 0.0 283 0.0000 -4.0000 0.0000 0.0000 0.0000 0.0000 0.5707 0.5707 0.0 364 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.4473 0.4473 0.0 Brute Force -------------------------- Min cost was 0.447255 Number of iterations 729 Search time 1.289000 sec Parameters at best (transmm, rotdeg) 0.000 0.000 0.000 0.000 0.000 0.000 -------------------------------------------- Starting Powell Minimization Init Powel Params dof = 6 0 0 1 0 2 0 3 0 4 0 5 0 5 -0.618 0.000 0.000 0.000 0.000 0.000 0.4299015765 11 -0.619 0.000 0.000 0.000 0.000 0.000 0.4299015047 16 -0.619 -1.618 0.000 0.000 0.000 0.000 0.3517210934 20 -0.619 -1.382 0.000 0.000 0.000 0.000 0.3509476397 21 -0.619 -1.321 0.000 0.000 0.000 0.000 0.3509220732 23 -0.619 -1.199 0.000 0.000 0.000 0.000 0.3495713529 27 -0.619 -1.207 0.000 0.000 0.000 0.000 0.3495428929 28 -0.619 -1.217 0.000 0.000 0.000 0.000 0.3495418277 30 -0.619 -1.212 0.000 0.000 0.000 0.000 0.3495373937 32 -0.619 -1.213 0.000 0.000 0.000 0.000 0.3495373606 35 -0.619 -1.213 1.000 0.000 0.000 0.000 0.3334539614 39 -0.619 -1.213 0.618 0.000 0.000 0.000 0.3304738598 41 -0.619 -1.213 0.710 0.000 0.000 0.000 0.3299582979 43 -0.619 -1.213 0.707 0.000 0.000 0.000 0.3299542481 46 -0.619 -1.213 0.702 0.000 0.000 0.000 0.3299493819 48 -0.619 -1.213 0.703 0.000 0.000 0.000 0.3299490183 54 -0.619 -1.213 0.703 -0.618 0.000 0.000 0.3104484121 56 -0.619 -1.213 0.703 -0.726 0.000 0.000 0.3089974365 58 -0.619 -1.213 0.703 -0.730 0.000 0.000 0.3089819149 59 -0.619 -1.213 0.703 -0.737 0.000 0.000 0.3089740737 61 -0.619 -1.213 0.703 -0.738 0.000 0.000 0.3089739940 71 -0.619 -1.213 0.703 -0.738 0.065 0.000 0.3088420176 73 -0.619 -1.213 0.703 -0.738 0.040 0.000 0.3087587599 75 -0.619 -1.213 0.703 -0.738 0.039 0.000 0.3087587399 79 -0.619 -1.213 0.703 -0.738 0.039 1.000 0.3077999811 83 -0.619 -1.213 0.703 -0.738 0.039 0.618 0.3043930413 88 -0.619 -1.213 0.703 -0.738 0.039 0.639 0.3043679091 89 -0.619 -1.213 0.703 -0.738 0.039 0.635 0.3043668462 101 -0.553 -1.213 0.703 -0.738 0.039 0.635 0.3042044716 103 -0.576 -1.213 0.703 -0.738 0.039 0.635 0.3041253014 105 -0.574 -1.213 0.703 -0.738 0.039 0.635 0.3041246669 106 -0.573 -1.213 0.703 -0.738 0.039 0.635 0.3041243867 112 -0.573 -1.831 0.703 -0.738 0.039 0.635 0.2991224102 114 -0.573 -1.567 0.703 -0.738 0.039 0.635 0.2946322302 115 -0.573 -1.579 0.703 -0.738 0.039 0.635 0.2944460923 116 -0.573 -1.631 0.703 -0.738 0.039 0.635 0.2937325934 118 -0.573 -1.642 0.703 -0.738 0.039 0.635 0.2936405792 120 -0.573 -1.652 0.703 -0.738 0.039 0.635 0.2936020810 121 -0.573 -1.653 0.703 -0.738 0.039 0.635 0.2936018173 130 -0.573 -1.653 0.720 -0.738 0.039 0.635 0.2935950219 132 -0.573 -1.653 0.713 -0.738 0.039 0.635 0.2935929680 133 -0.573 -1.653 0.714 -0.738 0.039 0.635 0.2935925652 141 -0.573 -1.653 0.714 -0.741 0.039 0.635 0.2935409789 143 -0.573 -1.653 0.714 -0.824 0.039 0.635 0.2932135581 144 -0.573 -1.653 0.714 -0.800 0.039 0.635 0.2932069466 145 -0.573 -1.653 0.714 -0.810 0.039 0.635 0.2932023033 146 -0.573 -1.653 0.714 -0.809 0.039 0.635 0.2932014379 147 -0.573 -1.653 0.714 -0.806 0.039 0.635 0.2931996625 149 -0.573 -1.653 0.714 -0.805 0.039 0.635 0.2931989176 156 -0.573 -1.653 0.714 -0.805 -0.015 0.635 0.2927451812 158 -0.573 -1.653 0.714 -0.805 -0.021 0.635 0.2927397695 167 -0.573 -1.653 0.714 -0.805 -0.021 0.661 0.2922917165 168 -0.573 -1.653 0.714 -0.805 -0.021 0.746 0.2915244687 172 -0.573 -1.653 0.714 -0.805 -0.021 0.757 0.2914854069 173 -0.573 -1.653 0.714 -0.805 -0.021 0.764 0.2914699918 176 -0.573 -1.653 0.714 -0.805 -0.021 0.766 0.2914673999 177 -0.573 -1.653 0.714 -0.805 -0.021 0.767 0.2914660962 185 -0.564 -1.653 0.714 -0.805 -0.021 0.767 0.2913883527 186 -0.516 -1.653 0.714 -0.805 -0.021 0.767 0.2913366515 188 -0.535 -1.653 0.714 -0.805 -0.021 0.767 0.2912687347 190 -0.533 -1.653 0.714 -0.805 -0.021 0.767 0.2912646814 193 -0.532 -1.653 0.714 -0.805 -0.021 0.767 0.2912633466 201 -0.532 -1.643 0.714 -0.805 -0.021 0.767 0.2911664692 202 -0.532 -1.634 0.714 -0.805 -0.021 0.767 0.2911504258 215 -0.532 -1.634 0.716 -0.805 -0.021 0.767 0.2911501841 225 -0.532 -1.634 0.716 -0.853 -0.021 0.767 0.2906694874 229 -0.532 -1.634 0.716 -0.855 -0.021 0.767 0.2906656896 241 -0.532 -1.634 0.716 -0.855 -0.009 0.767 0.2906362314 242 -0.532 -1.634 0.716 -0.855 -0.008 0.767 0.2906360812 252 -0.532 -1.634 0.716 -0.855 -0.008 0.754 0.2906332610 253 -0.532 -1.634 0.716 -0.855 -0.008 0.760 0.2906271507 254 -0.532 -1.634 0.716 -0.855 -0.008 0.759 0.2906270899 265 -0.538 -1.634 0.716 -0.855 -0.008 0.759 0.2906219439 276 -0.538 -1.630 0.716 -0.855 -0.008 0.759 0.2906133740 278 -0.538 -1.631 0.716 -0.855 -0.008 0.759 0.2906128466 290 -0.538 -1.631 0.717 -0.855 -0.008 0.759 0.2906126178 300 -0.538 -1.631 0.717 -0.858 -0.008 0.759 0.2906067441 301 -0.538 -1.631 0.717 -0.861 -0.008 0.759 0.2906054540 302 -0.538 -1.631 0.717 -0.860 -0.008 0.759 0.2906053563 312 -0.538 -1.631 0.717 -0.860 -0.014 0.759 0.2905980299 Powell done niters = 3 Computing relative cost 0 -25.0 -25.0 -25.0 1.002400 1 -25.0 -25.0 25.0 1.021889 2 -25.0 25.0 -25.0 0.990488 3 -25.0 25.0 25.0 1.010753 4 25.0 -25.0 -25.0 1.035562 5 25.0 -25.0 25.0 1.018279 6 25.0 25.0 -25.0 0.992282 7 25.0 25.0 25.0 1.000628 REL: 8 0.290598 8.072279 1.009035 rel = 0.287996 Number of iterations 3 Min cost was 0.290598 Number of FunctionCalls 326 TolPowell 0.000100 nMaxItersPowell 36 OptimizationTime 0.593000 sec Parameters at optimum (transmm) -0.53764 -1.63051 0.71657 Parameters at optimum (rotdeg) -0.86014 -0.01418 0.75947 Final costs ---------------- Number of surface hits 2760 WM Intensity 282.5381 +/- 58.4487 Ctx Intensity 336.6593 +/- 73.3177 Pct Contrast 16.8979 +/- 18.8299 Cost 0.2906 RelCost 0.4424 Reg at min cost was 1.000 0.002 -0.004 3.763; 0.004 -0.163 0.987 -32.919; 0.001 -0.987 -0.163 0.493; 0.000 0.000 0.000 1.000; Writing optimal reg to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/tmp.bbregister.386/bbr.pass1.dat, type = 14 Original Reg 1.000 -0.001 0.010 3.886; -0.010 -0.148 0.989 -31.336; 0.001 -0.989 -0.148 -0.695; 0.000 0.000 0.000 1.000; Original Reg - Optimal Reg -0.000 -0.002 0.013 0.122; -0.013 0.015 0.002 1.583; -0.000 -0.002 0.015 -1.188; 0.000 0.000 0.000 0.000; Computing change in lh position LH rmsDiffMean 2.228663 Computing change in rh position Surface RMS Diff (mm) 1.953464 3.386821 mri_segreg done mri_segreg --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/tmp.bbregister.386/template.nii --init-reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/tmp.bbregister.386/bbr.pass1.dat --out-reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.bbr.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.bbr.dat.mincost --dof 6 --nmax 36 --param /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.bbr.dat.param --surf white --cur-reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/tmp.bbregister.386/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5 $Id: mri_segreg.c,v 1.103.2.1 2011/10/07 19:14:42 greve Exp $ setenv SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui cd /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree mri_segreg --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/tmp.bbregister.386/template.nii --init-reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/tmp.bbregister.386/bbr.pass1.dat --out-reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.bbr.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.bbr.dat.mincost --dof 6 --nmax 36 --param /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.bbr.dat.param --surf white --cur-reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/tmp.bbregister.386/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5 sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto movvol /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/tmp.bbregister.386/template.nii regfile /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/tmp.bbregister.386/bbr.pass1.dat subject 02ST dof 6 outregfile /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.bbr.dat UseMask 0 UseLH 1 UseRH 1 nsubsamp 1 PenaltySign -1 PenaltySlope 0.500000 PenaltyCenter 0.000000 surfname white GMProjFrac 0.500000 WMProjAbs 2.000000 lhcostfile (null) rhcostfile (null) interp trilinear (1) frame 0 TolPowell 0.000000 nMaxItersPowell 36 n1dmin 3 Profile 0 Gdiag_no -1 AddNoise 0 (0) SynthSeed 1376763002 TransRandMax 0.000000 RotRandMax 0.000000 Translations 0.000000 0.000000 0.000000 Rotations 0.000000 0.000000 0.000000 Input reg 1.000 0.002 -0.004 3.763; 0.004 -0.163 0.987 -32.919; 0.001 -0.987 -0.163 0.493; 0.000 0.000 0.000 1.000; Loading mov Extracting frame 0 Projecting LH Surfs Loading lh.white surf Loading lh.thickness for GM GM Proj: 1 0.500000 2.000000 WM Proj: 0 0.500000 2.000000 Projecting RH Surfs Loading rh.white surf Loading rh.thickness Projecting RH Surfs Computing relative cost 0 -25.0 -25.0 -25.0 0.992025 1 -25.0 -25.0 25.0 1.043279 2 -25.0 25.0 -25.0 1.002888 3 -25.0 25.0 25.0 0.990119 4 25.0 -25.0 -25.0 1.020453 5 25.0 -25.0 25.0 1.012193 6 25.0 25.0 -25.0 0.999725 7 25.0 25.0 25.0 1.002746 REL: 8 0.305168 8.063427 1.007928 rel = 0.302768 Initial costs ---------------- Number of surface hits 275742 WM Intensity 283.9914 +/- 61.5946 Ctx Intensity 338.6018 +/- 75.5651 Pct Contrast 17.0338 +/- 19.0296 Cost 0.3052 RelCost 0.3028 ------------------------------------ Brute force preopt -0.1 0.1 0.1, n = 729 0 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.3010 0.3010 0.0 1 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 0.3001 0.3001 0.0 3 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 -0.1000 0.2994 0.2994 0.0 4 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 0.0000 0.2993 0.2993 0.0 9 -0.1000 -0.1000 -0.1000 0.0000 -0.1000 -0.1000 0.2973 0.2973 0.0 10 -0.1000 -0.1000 -0.1000 0.0000 -0.1000 0.0000 0.2962 0.2962 0.0 18 -0.1000 -0.1000 -0.1000 0.1000 -0.1000 -0.1000 0.2951 0.2951 0.0 21 -0.1000 -0.1000 -0.1000 0.1000 0.0000 -0.1000 0.2951 0.2951 0.0 37 -0.1000 -0.1000 0.0000 0.0000 -0.1000 0.0000 0.2942 0.2942 0.0 90 -0.1000 0.0000 -0.1000 0.0000 -0.1000 -0.1000 0.2937 0.2937 0.0 105 -0.1000 0.0000 -0.1000 0.1000 0.1000 -0.1000 0.2936 0.2936 0.0 106 -0.1000 0.0000 -0.1000 0.1000 0.1000 0.0000 0.2935 0.2935 0.0 108 -0.1000 0.0000 0.0000 -0.1000 -0.1000 -0.1000 0.2932 0.2932 0.0 111 -0.1000 0.0000 0.0000 -0.1000 0.0000 -0.1000 0.2929 0.2929 0.0 112 -0.1000 0.0000 0.0000 -0.1000 0.0000 0.0000 0.2926 0.2926 0.0 117 -0.1000 0.0000 0.0000 0.0000 -0.1000 -0.1000 0.2917 0.2917 0.0 118 -0.1000 0.0000 0.0000 0.0000 -0.1000 0.0000 0.2913 0.2913 0.0 364 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.2906 0.2906 0.0 Brute Force -------------------------- Min cost was 0.290598 Number of iterations 729 Search time 1.280000 sec Parameters at best (transmm, rotdeg) 0.000 0.000 0.000 0.000 0.000 0.000 -------------------------------------------- Starting Powell Minimization Init Powel Params dof = 6 0 0 1 0 2 0 3 0 4 0 5 0 7 0.016 0.000 0.000 0.000 0.000 0.000 0.3051537168 8 0.017 0.000 0.000 0.000 0.000 0.000 0.3051536983 15 0.017 0.382 0.000 0.000 0.000 0.000 0.3031341760 16 0.017 0.245 0.000 0.000 0.000 0.000 0.3021958831 17 0.017 0.244 0.000 0.000 0.000 0.000 0.3021955928 18 0.017 0.242 0.000 0.000 0.000 0.000 0.3021841852 22 0.017 0.236 0.000 0.000 0.000 0.000 0.3021807052 31 0.017 0.236 0.382 0.000 0.000 0.000 0.3017590429 32 0.017 0.236 0.205 0.000 0.000 0.000 0.3006733554 33 0.017 0.236 0.207 0.000 0.000 0.000 0.3006727386 34 0.017 0.236 0.212 0.000 0.000 0.000 0.3006720110 36 0.017 0.236 0.211 0.000 0.000 0.000 0.3006719825 44 0.017 0.236 0.211 0.003 0.000 0.000 0.3006627166 45 0.017 0.236 0.211 0.041 0.000 0.000 0.3006147448 49 0.017 0.236 0.211 0.042 0.000 0.000 0.3006141757 51 0.017 0.236 0.211 0.043 0.000 0.000 0.3006134066 52 0.017 0.236 0.211 0.044 0.000 0.000 0.3006116420 59 0.017 0.236 0.211 0.044 0.080 0.000 0.3001243881 60 0.017 0.236 0.211 0.044 0.100 0.000 0.3001068370 69 0.017 0.236 0.211 0.044 0.100 -0.056 0.2999833536 70 0.017 0.236 0.211 0.044 0.100 -0.074 0.2999813777 71 0.017 0.236 0.211 0.044 0.100 -0.067 0.2999788520 72 0.017 0.236 0.211 0.044 0.100 -0.066 0.2999728700 83 0.008 0.236 0.211 0.044 0.100 -0.066 0.2999680836 103 0.007 0.236 0.233 0.044 0.100 -0.066 0.2999476559 104 0.007 0.236 0.234 0.044 0.100 -0.066 0.2999476239 113 0.007 0.236 0.234 0.038 0.100 -0.066 0.2999469748 116 0.007 0.236 0.234 0.039 0.100 -0.066 0.2999469001 124 0.007 0.236 0.234 0.039 0.103 -0.066 0.2999463191 147 0.003 0.236 0.234 0.039 0.103 -0.066 0.2999452073 166 0.003 0.236 0.236 0.039 0.103 -0.066 0.2999450721 167 0.003 0.236 0.237 0.039 0.103 -0.066 0.2999450692 176 0.003 0.236 0.237 0.037 0.103 -0.066 0.2999450219 185 0.003 0.236 0.237 0.037 0.105 -0.066 0.2999449845 186 0.003 0.236 0.237 0.037 0.106 -0.066 0.2999449211 213 0.002 0.236 0.237 0.037 0.106 -0.066 0.2999448845 242 0.002 0.236 0.237 0.038 0.106 -0.066 0.2999448721 Powell done niters = 4 Computing relative cost 0 -25.0 -25.0 -25.0 0.991062 1 -25.0 -25.0 25.0 1.042948 2 -25.0 25.0 -25.0 1.002588 3 -25.0 25.0 25.0 0.990263 4 25.0 -25.0 -25.0 1.019450 5 25.0 -25.0 25.0 1.010008 6 25.0 25.0 -25.0 1.003204 7 25.0 25.0 25.0 1.001151 REL: 8 0.299945 8.060674 1.007584 rel = 0.297687 Number of iterations 4 Min cost was 0.299945 Number of FunctionCalls 324 TolPowell 0.000000 nMaxItersPowell 36 OptimizationTime 25.961000 sec Parameters at optimum (transmm) 0.00213 0.23593 0.23669 Parameters at optimum (rotdeg) 0.03796 0.10561 -0.06572 Final costs ---------------- Number of surface hits 275962 WM Intensity 283.9502 +/- 61.4506 Ctx Intensity 339.1465 +/- 75.3171 Pct Contrast 17.2297 +/- 19.0137 Cost 0.2999 RelCost 0.3028 Reg at min cost was 1.000 -0.000 -0.003 3.729; 0.003 -0.162 0.987 -32.688; -0.001 -0.987 -0.162 0.701; 0.000 0.000 0.000 1.000; Writing optimal reg to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.bbr.dat, type = 14 Original Reg 1.000 0.002 -0.004 3.763; 0.004 -0.163 0.987 -32.919; 0.001 -0.987 -0.163 0.493; 0.000 0.000 0.000 1.000; Original Reg - Optimal Reg -0.000 0.002 -0.001 0.035; 0.001 -0.001 -0.000 -0.231; 0.002 0.000 -0.001 -0.208; 0.000 0.000 0.000 0.000; Computing change in lh position LH rmsDiffMean 0.391452 Computing change in rh position Surface RMS Diff (mm) 0.335363 0.460675 mri_segreg done tkregister2_cmdl --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.bbr.dat --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.bbr.mat tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.bbr.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 ---- Input registration matrix -------- 1.000 -0.000 -0.003 3.729; 0.003 -0.162 0.987 -32.688; -0.001 -0.987 -0.162 0.701; 0.000 0.000 0.000 1.000; float2int = 0 --------------------------------------- INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/orig.mgz Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz Tmov: -------------------- -2.333 0.000 0.000 112.000; 0.000 0.000 2.300 -52.901; 0.000 -2.333 0.000 112.000; 0.000 0.000 0.000 1.000; mkheaderreg = 0, float2int = 0 ---- Input registration matrix -------- 1.000 -0.000 -0.003 3.729; 0.003 -0.162 0.987 -32.688; -0.001 -0.987 -0.162 0.701; 0.000 0.000 0.000 1.000; Determinant 1 subject = 02ST RegMat --------------------------- 1.000 -0.000 -0.003 3.729; 0.003 -0.162 0.987 -32.688; -0.001 -0.987 -0.162 0.701; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -12.5224, ref det = -1 Cleaning up Started at Fri Aug 9 11:43:31 BST 2013 Ended at Fri Aug 9 11:44:33 BST 2013 BBR-Run-Time-Sec 62 bbregister Done To check results, run: tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.bbr.dat --surf convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.bbr.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.bbr.mat convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.bbr.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.bbr.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.bbr.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.bbr.mat #------------------------------------- #@# Inter-subject registration Fri Aug 9 11:44:33 BST 2013 flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_mni.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -cost mutualinfo convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/mni2anat.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2mni.bbr.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.bbr.mat convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/mni2diff.bbr.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2mni.bbr.mat convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2mni.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/mni2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2mni.mat #------------------------------------- #@# Masks Fri Aug 9 11:46:08 BST 2013 mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz Binarizing based on matching values nMatch 5 0 2 1 7 2 41 3 46 4 77 binval 1 binvalnot 0 Found 467858 values in range Counting number of voxels Found 467858 voxels in final mask mri_binarize done mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz Binarizing based on matching values nMatch 8 0 2 1 7 2 41 3 46 4 77 5 28 6 60 7 16 binval 1 binvalnot 0 Found 494467 values in range Counting number of voxels Found 494467 voxels in final mask mri_binarize done mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz Binarizing based on matching values nMatch 2 0 4 1 43 binval 0 binvalnot 1 Found 7382 values in range Counting number of voxels Found 7382 voxels in final mask mri_binarize done mri_aparc2aseg --s 02ST --annot aparc --wmparc-dmax 2 --labelwm --hypo-as-wm --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui subject 02ST outvol /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz useribbon 0 baseoffset 0 labeling wm labeling hypo-intensities as wm dmaxctx 2.000000 RipUnknown 0 Reading lh white surface /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/lh.white Reading lh pial surface /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/lh.pial Loading lh annotations from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/label/lh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Reading rh white surface /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/rh.white Reading rh pial surface /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/rh.pial Loading rh annotations from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/label/rh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Have color table for lh white annotation Have color table for rh white annotation Loading ribbon segmentation from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/ribbon.mgz Loading filled from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/filled.mgz Building hash of lh white Building hash of lh pial Building hash of rh white Building hash of rh pial Loading aseg from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aseg.mgz ASeg Vox2RAS: ----------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; ------------------------- Labeling Slice 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 902358 Used brute-force search on 0 voxels Fixing Parahip LH WM Found 6 clusters 0 k 4.000000 1 k 1038.000000 2 k 3.000000 3 k 1.000000 4 k 2.000000 5 k 1.000000 Fixing Parahip RH WM Found 5 clusters 0 k 1.000000 1 k 12.000000 2 k 1.000000 3 k 1.000000 4 k 1038.000000 Writing output aseg to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 2999 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 2999 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz frame 0 nErode3d 0 nErode2d 0 output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz Binarizing based on threshold min 1000 max 2999 binval 1 binvalnot 0 Found 458567 values in range Counting number of voxels Found 458567 voxels in final mask mri_binarize done mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz frame 0 nErode3d 0 nErode2d 0 output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz Binarizing based on threshold min 1000 max 4999 binval 1 binvalnot 0 Found 737102 values in range Counting number of voxels Found 737102 voxels in final mask mri_binarize done mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/Brain-Stem.nii.gz $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/Brain-Stem.nii.gz sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/Brain-Stem.nii.gz Binarizing based on matching values nMatch 1 0 16 binval 1 binvalnot 0 Found 19373 values in range Counting number of voxels Found 19373 voxels in final mask mri_binarize done fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz -add /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/Brain-Stem.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm+bs.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brainmask.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brainmask.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brainmask.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz... fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz -mul /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask-vent.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz... fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz -dilM -bin /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg_mask.nii.gz flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/White-Matter.bbr.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/White-Matter.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter++.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter++.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter++.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter++.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/White-Matter++.bbr.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter++.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/White-Matter++.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/notventricles.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/notventricles.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/notventricles.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/notventricles.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/notventricles.bbr.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/notventricles.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/notventricles.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/cortex.bbr.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/cortex.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/cortex+2mm.bbr.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/cortex+2mm.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm+bs.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm+bs.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm+bs.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm+bs.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm+bs.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm+bs.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/cortex+2mm+bs.bbr.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm+bs.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/cortex+2mm+bs.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/aparc+aseg.bbr.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg+2mm.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg+2mm.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg+2mm.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg+2mm.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/aparc+aseg+2mm.bbr.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg+2mm.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg+2mm.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg_mask.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg_mask.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg_mask.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg_mask.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg_mask.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/aparc+aseg_mask.bbr.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg_mask.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/anat_brain_mask.bbr.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/anat_brain_mask.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask-vent.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask-vent.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask-vent.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask-vent.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask-vent.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask-vent.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/anat_brain_mask-vent.bbr.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask-vent.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/anat_brain_mask-vent.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour fslstats -t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz -k /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/White-Matter++.bbr.nii.gz -m -s | awk '{print $1/$2}' > /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_snr.txt flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/lowb_brain_mask.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lowb_brain_mask.bbr.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2mni.bbr.mat -interp nearestneighbour flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/lowb_brain_mask.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/lowb_brain_mask.bbr.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.bbr.mat -interp nearestneighbour ln -sf /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/aparc+aseg_mask.bbr.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/nodif_brain_mask.nii.gz #------------------------------------- #@# Tensor fit Fri Aug 9 11:49:39 BST 2013 dtifit -k /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz -m /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/aparc+aseg_mask.bbr.nii.gz -r /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs -b /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals -o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dtifit 0 96 0 96 0 46 0 slices processed 1 slices processed 2 slices processed 3 slices processed 4 slices processed 5 slices processed 6 slices processed 7 slices processed 8 slices processed 9 slices processed 10 slices processed 11 slices processed 12 slices processed 13 slices processed 14 slices processed 15 slices processed 16 slices processed 17 slices processed 18 slices processed 19 slices processed 20 slices processed 21 slices processed 22 slices processed 23 slices processed 24 slices processed 25 slices processed 26 slices processed 27 slices processed 28 slices processed 29 slices processed 30 slices processed 31 slices processed 32 slices processed 33 slices processed 34 slices processed 35 slices processed 36 slices processed 37 slices processed 38 slices processed 39 slices processed 40 slices processed 41 slices processed 42 slices processed 43 slices processed 44 slices processed 45 slices processed flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dtifit_FA.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_FA.bbr.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2mni.bbr.mat flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dtifit_L1.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_L1.bbr.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2mni.bbr.mat flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dtifit_L2.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_L2.bbr.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2mni.bbr.mat flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dtifit_L3.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_L3.bbr.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2mni.bbr.mat flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dtifit_MD.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_MD.bbr.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2mni.bbr.mat flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dtifit_MO.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_MO.bbr.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2mni.bbr.mat flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dtifit_S0.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_S0.bbr.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2mni.bbr.mat #------------------------------------- #@# Priors Fri Aug 9 11:49:49 BST 2013 /usr/local/freesurfer/bin/dmri_train --outdir /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni --out lh.cst_AS_avg33_mni_bbr rh.cst_AS_avg33_mni_bbr lh.ilf_AS_avg33_mni_bbr rh.ilf_AS_avg33_mni_bbr lh.unc_AS_avg33_mni_bbr rh.unc_AS_avg33_mni_bbr fmajor_PP_avg33_mni_bbr fminor_PP_avg33_mni_bbr lh.atr_PP_avg33_mni_bbr rh.atr_PP_avg33_mni_bbr lh.ccg_PP_avg33_mni_bbr rh.ccg_PP_avg33_mni_bbr lh.cab_PP_avg33_mni_bbr rh.cab_PP_avg33_mni_bbr lh.slfp_PP_avg33_mni_bbr rh.slfp_PP_avg33_mni_bbr lh.slft_PP_avg33_mni_bbr rh.slft_PP_avg33_mni_bbr --slist /tmp/subj33.02ST.32415.txt --trk dlabel/mni/lh.cst_AS.bbr.trk dlabel/mni/rh.cst_AS.bbr.trk dlabel/mni/lh.ilf_AS.bbr.trk dlabel/mni/rh.ilf_AS.bbr.trk dlabel/mni/lh.unc_AS.bbr.trk dlabel/mni/rh.unc_AS.bbr.trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/fminor_PP.bbr.trk dlabel/mni/lh.atr_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk dlabel/mni/lh.ccg_PP.bbr.trk dlabel/mni/rh.ccg_PP.bbr.trk dlabel/mni/lh.cab_PP.bbr.trk dlabel/mni/rh.cab_PP.bbr.trk dlabel/mni/lh.slfp_PP.bbr.trk dlabel/mni/rh.slfp_PP.bbr.trk dlabel/mni/lh.slft_PP.bbr.trk dlabel/mni/rh.slft_PP.bbr.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/fminor_PP_roi1.bbr.nii.gz dlabel/mni/fminor_PP_roi2.bbr.nii.gz dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz --bmask /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz --fa /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dtifit_FA.nii.gz --cptdir /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/mni2diff.bbr.mat --ncpts 6 6 5 5 5 5 7 5 5 5 5 5 4 4 5 5 5 5 --trunc cwd /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree cmdline /usr/local/freesurfer/bin/dmri_train --outdir /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni --out lh.cst_AS_avg33_mni_bbr rh.cst_AS_avg33_mni_bbr lh.ilf_AS_avg33_mni_bbr rh.ilf_AS_avg33_mni_bbr lh.unc_AS_avg33_mni_bbr rh.unc_AS_avg33_mni_bbr fmajor_PP_avg33_mni_bbr fminor_PP_avg33_mni_bbr lh.atr_PP_avg33_mni_bbr rh.atr_PP_avg33_mni_bbr lh.ccg_PP_avg33_mni_bbr rh.ccg_PP_avg33_mni_bbr lh.cab_PP_avg33_mni_bbr rh.cab_PP_avg33_mni_bbr lh.slfp_PP_avg33_mni_bbr rh.slfp_PP_avg33_mni_bbr lh.slft_PP_avg33_mni_bbr rh.slft_PP_avg33_mni_bbr --slist /tmp/subj33.02ST.32415.txt --trk dlabel/mni/lh.cst_AS.bbr.trk dlabel/mni/rh.cst_AS.bbr.trk dlabel/mni/lh.ilf_AS.bbr.trk dlabel/mni/rh.ilf_AS.bbr.trk dlabel/mni/lh.unc_AS.bbr.trk dlabel/mni/rh.unc_AS.bbr.trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/fminor_PP.bbr.trk dlabel/mni/lh.atr_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk dlabel/mni/lh.ccg_PP.bbr.trk dlabel/mni/rh.ccg_PP.bbr.trk dlabel/mni/lh.cab_PP.bbr.trk dlabel/mni/rh.cab_PP.bbr.trk dlabel/mni/lh.slfp_PP.bbr.trk dlabel/mni/rh.slfp_PP.bbr.trk dlabel/mni/lh.slft_PP.bbr.trk dlabel/mni/rh.slft_PP.bbr.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/fminor_PP_roi1.bbr.nii.gz dlabel/mni/fminor_PP_roi2.bbr.nii.gz dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz --bmask /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz --fa /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dtifit_FA.nii.gz --cptdir /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/mni2diff.bbr.mat --ncpts 6 6 5 5 5 5 7 5 5 5 5 5 4 4 5 5 5 5 --trunc sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto Output directory: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni Output directory in test subject's space: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff Output base: lh.cst_AS_avg33_mni_bbr rh.cst_AS_avg33_mni_bbr lh.ilf_AS_avg33_mni_bbr rh.ilf_AS_avg33_mni_bbr lh.unc_AS_avg33_mni_bbr rh.unc_AS_avg33_mni_bbr fmajor_PP_avg33_mni_bbr fminor_PP_avg33_mni_bbr lh.atr_PP_avg33_mni_bbr rh.atr_PP_avg33_mni_bbr lh.ccg_PP_avg33_mni_bbr rh.ccg_PP_avg33_mni_bbr lh.cab_PP_avg33_mni_bbr rh.cab_PP_avg33_mni_bbr lh.slfp_PP_avg33_mni_bbr rh.slfp_PP_avg33_mni_bbr lh.slft_PP_avg33_mni_bbr rh.slft_PP_avg33_mni_bbr Training subject directory list: /tmp/subj33.02ST.32415.txt Location of streamline files relative to base: dlabel/mni/lh.cst_AS.bbr.trk dlabel/mni/rh.cst_AS.bbr.trk dlabel/mni/lh.ilf_AS.bbr.trk dlabel/mni/rh.ilf_AS.bbr.trk dlabel/mni/lh.unc_AS.bbr.trk dlabel/mni/rh.unc_AS.bbr.trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/fminor_PP.bbr.trk dlabel/mni/lh.atr_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk dlabel/mni/lh.ccg_PP.bbr.trk dlabel/mni/rh.ccg_PP.bbr.trk dlabel/mni/lh.cab_PP.bbr.trk dlabel/mni/rh.cab_PP.bbr.trk dlabel/mni/lh.slfp_PP.bbr.trk dlabel/mni/rh.slfp_PP.bbr.trk dlabel/mni/lh.slft_PP.bbr.trk dlabel/mni/rh.slft_PP.bbr.trk Location of start ROI files relative to base: dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fminor_PP_roi1.bbr.nii.gz dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Location of end ROI files relative to base: dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/fminor_PP_roi2.bbr.nii.gz dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Location of cortex masks relative to base: dlabel/mni/cortex+2mm.nii.gz Label ID's from aparc+aseg to add to cortex mask: 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 Location of aparc+aseg's relative to base: dlabel/mni/aparc+aseg.nii.gz Brain mask for output subject: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz FA map for output subject: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dtifit_FA.nii.gz Affine registration from atlas to base for output subject: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/mni2diff.bbr.mat Number of control points for initial spline: 6 6 5 5 5 5 7 5 5 5 5 5 4 4 5 5 5 5 Exclude previously chosen center streamlines: 0 Use truncated streamlines: 1 Loading brain mask of output subject from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz Loading FA map of output subject from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dtifit_FA.nii.gz Loading affine registration from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/mni2diff.bbr.mat Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cst_AS.bbr.trk INFO: Rejected 429 streamlines for straying off mask INFO: Rejected 82 streamlines for reversing direction INFO: Rejected 42 streamlines as length outliers INFO: Have 7879 total streamlines (min/mean/max length: 59/99/132) Loading segmentation from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/cortex+2mm.nii.gz Processing pathway 1 of 18... Matching streamline ends INFO: Have 4729 non-truncated streamlines (min/mean/max length: 59/99/132) INFO: Center of mass of start points: (97+/-3, 98+/-6, 38+/-13) INFO: Center of mass of midpoints: (111+/-3, 110+/-4, 78+/-7) INFO: Center of mass of end points: (113+/-8, 106+/-9, 141+/-6) INFO: Split streamlines into 27 segments Computing path histograms INFO: Total streamline volume is 39172 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 103 voxels Selecting 6 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0313179 INFO: Points where local peeks in curvature occur are 111 112 76 (curv = 0.0619853) 113 111 100 (curv = 0.0365303) 114 108 110 (curv = 0.0424719) 114 104 118 (curv = 0.081419) 113 104 125 (curv = 0.0649397) INFO: Intermediate dominant points are 98 99 37 103 107 59 111 112 76 113 111 100 114 104 118 107 109 143 INFO: Final dominant points are 98 99 37 106 110 65 111 112 76 113 111 100 114 104 118 107 109 143 INFO: Selected control points are 98 99 37 105 109 65 112 111 76 113 111 100 114 104 118 107 109 143 INFO: Distances between consecutive points are 31 13 24 19 26 INFO: Selected control points in test subject's space are 51 45 1 53 50 11 56 51 15 56 51 24 56 49 30 53 52 39 INFO: Distances between consecutive points in test subject's space are 11 5 9 6 10 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.cst_AS_avg33_mni_bbr_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.cst_AS_avg33_mni_bbr_cpts_6.nii.gz Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6.nii.gz Done in 59.036 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cst_AS.bbr.trk INFO: Rejected 449 streamlines for straying off mask INFO: Rejected 89 streamlines for reversing direction INFO: Rejected 31 streamlines as length outliers INFO: Have 8727 total streamlines (min/mean/max length: 58/100/141) Processing pathway 2 of 18... Matching streamline ends INFO: Have 5253 non-truncated streamlines (min/mean/max length: 58/99/141) INFO: Center of mass of start points: (82+/-3, 97+/-6, 40+/-14) INFO: Center of mass of midpoints: (68+/-4, 110+/-4, 78+/-7) INFO: Center of mass of end points: (68+/-7, 105+/-11, 141+/-7) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 46215 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 92 voxels Selecting 6 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0326069 INFO: Points where local peeks in curvature occur are 73 109 67 (curv = 0.0363797) 68 110 76 (curv = 0.0539409) 67 110 85 (curv = 0.0352519) 67 111 92 (curv = 0.0340746) 67 110 110 (curv = 0.0536851) 67 103 123 (curv = 0.0971425) INFO: Intermediate dominant points are 83 95 38 77 103 58 68 110 76 67 110 110 67 103 123 70 110 138 INFO: Final dominant points are 83 95 38 74 108 65 68 110 76 67 110 110 67 103 123 70 110 138 INFO: Selected control points are 83 95 38 75 107 65 68 110 76 67 110 108 67 103 122 70 110 138 INFO: Distances between consecutive points are 31 13 32 16 18 INFO: Selected control points in test subject's space are 45 43 1 41 49 10 38 50 14 37 51 26 37 48 31 38 51 36 INFO: Distances between consecutive points in test subject's space are 12 5 12 6 6 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.cst_AS_avg33_mni_bbr_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.cst_AS_avg33_mni_bbr_cpts_6.nii.gz Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6.nii.gz Done in 69.98 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ilf_AS.bbr.trk INFO: Rejected 12 streamlines for straying off mask INFO: Rejected 33 streamlines for reversing direction INFO: Rejected 22 streamlines as length outliers INFO: Have 3541 total streamlines (min/mean/max length: 53/91/143) Processing pathway 3 of 18... Matching streamline ends INFO: Have 1342 non-truncated streamlines (min/mean/max length: 53/97/143) INFO: Center of mass of start points: (133+/-8, 137+/-5, 41+/-10) INFO: Center of mass of midpoints: (132+/-4, 103+/-3, 59+/-5) INFO: Center of mass of end points: (115+/-13, 47+/-12, 70+/-14) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 39207 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 91 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.032025 INFO: Points where local peeks in curvature occur are 132 117 53 (curv = 0.060036) 134 109 56 (curv = 0.0410491) 135 95 59 (curv = 0.0780916) 126 76 69 (curv = 0.0630608) 120 60 69 (curv = 0.0507169) INFO: Intermediate dominant points are 136 136 36 132 117 53 135 95 59 126 76 69 109 48 69 INFO: Final dominant points are 136 136 36 132 117 53 135 95 59 126 76 69 109 48 69 WARN: Defaulting to equidistant control points INFO: Selected control points are 136 136 36 132 115 54 135 94 60 125 73 69 109 48 69 INFO: Distances between consecutive points are 28 22 25 30 INFO: Selected control points in test subject's space are 66 60 0 64 52 7 65 44 10 61 35 14 55 25 15 INFO: Distances between consecutive points in test subject's space are 11 9 11 12 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 91 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0256462 INFO: Points where local peeks in curvature occur are 133 117 54 (curv = 0.0292212) 131 88 66 (curv = 0.0281282) 129 81 67 (curv = 0.037797) 123 71 70 (curv = 0.06275) 122 65 70 (curv = 0.0264093) 120 59 69 (curv = 0.0292062) INFO: Intermediate dominant points are 139 136 37 133 117 54 131 92 65 123 71 70 109 46 65 INFO: Final dominant points are 139 136 37 133 117 54 130 83 67 123 71 70 109 46 65 WARN: Defaulting to equidistant control points INFO: Selected control points are 139 136 37 133 115 55 131 93 65 122 70 70 109 46 65 INFO: Distances between consecutive points are 28 24 25 28 INFO: Selected control points in test subject's space are 67 60 0 64 52 7 64 44 12 60 34 15 55 24 14 INFO: Distances between consecutive points in test subject's space are 11 9 11 11 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 88 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0260468 INFO: Points where local peeks in curvature occur are 133 118 52 (curv = 0.0572686) 135 93 60 (curv = 0.0541416) 127 76 70 (curv = 0.0503078) 119 58 70 (curv = 0.0294936) INFO: Intermediate dominant points are 134 134 37 133 118 52 135 93 60 127 76 70 111 48 69 INFO: Final dominant points are 134 134 37 133 118 52 135 93 60 127 76 70 111 48 69 WARN: Defaulting to equidistant control points INFO: Selected control points are 134 134 37 134 114 54 135 92 61 125 72 70 111 48 69 INFO: Distances between consecutive points are 26 23 24 28 INFO: Selected control points in test subject's space are 65 60 0 65 52 7 65 43 11 61 35 15 56 25 15 INFO: Distances between consecutive points in test subject's space are 11 10 10 11 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 89 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0226989 INFO: Points where local peeks in curvature occur are 133 105 60 (curv = 0.0243927) 130 85 66 (curv = 0.0338364) 123 72 70 (curv = 0.0585503) INFO: Intermediate dominant points are 139 136 37 133 105 60 131 92 65 123 72 70 109 46 65 INFO: Final dominant points are 139 136 37 133 105 60 129 84 67 123 72 70 109 46 65 WARN: Defaulting to equidistant control points INFO: Selected control points are 139 136 37 133 114 56 131 92 65 122 69 70 109 46 65 INFO: Distances between consecutive points are 30 24 25 27 INFO: Selected control points in test subject's space are 67 60 0 64 52 8 64 43 12 60 34 15 55 24 14 INFO: Distances between consecutive points in test subject's space are 12 10 10 11 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 91 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0267675 INFO: Points where local peeks in curvature occur are 133 116 53 (curv = 0.0517603) 135 109 55 (curv = 0.0409397) 135 94 60 (curv = 0.0557744) 128 77 70 (curv = 0.0483688) INFO: Intermediate dominant points are 138 136 37 133 116 53 135 94 60 128 77 70 112 48 70 INFO: Final dominant points are 138 136 37 133 116 53 135 94 60 128 77 70 112 48 70 WARN: Defaulting to equidistant control points INFO: Selected control points are 138 136 37 133 115 54 135 94 60 126 73 70 112 48 70 INFO: Distances between consecutive points are 27 22 25 29 INFO: Selected control points in test subject's space are 67 60 0 64 52 7 65 44 10 62 35 15 56 25 16 INFO: Distances between consecutive points in test subject's space are 11 9 11 12 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 87 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0306825 INFO: Points where local peeks in curvature occur are 132 119 51 (curv = 0.056939) 135 93 59 (curv = 0.0610923) 127 77 69 (curv = 0.0725985) INFO: Intermediate dominant points are 134 134 38 132 119 51 135 93 59 127 77 69 112 48 69 INFO: Final dominant points are 134 134 38 132 119 51 135 93 59 127 77 69 112 48 69 WARN: Defaulting to equidistant control points INFO: Selected control points are 134 134 38 133 114 54 135 93 59 125 72 70 112 48 69 INFO: Distances between consecutive points are 26 22 26 27 INFO: Selected control points in test subject's space are 65 60 0 64 52 7 65 43 10 61 35 15 56 25 15 INFO: Distances between consecutive points in test subject's space are 11 10 10 11 WARN: Could not find satisfactory control point fit - try 6 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 96 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0353083 INFO: Points where local peeks in curvature occur are 133 129 47 (curv = 0.0772084) 134 124 47 (curv = 0.0660057) 132 114 54 (curv = 0.0755768) 134 103 56 (curv = 0.0649873) 131 83 66 (curv = 0.0582518) 125 72 71 (curv = 0.035855) INFO: Intermediate dominant points are 136 141 48 132 114 54 131 83 66 124 69 71 115 45 75 INFO: Final dominant points are 136 141 48 132 114 54 131 83 66 119 57 75 115 45 75 INFO: Selected control points are 136 141 48 133 113 52 131 84 66 119 59 75 115 45 75 INFO: Distances between consecutive points are 28 32 29 15 INFO: Selected control points in test subject's space are 65 63 4 64 51 6 64 40 13 59 30 17 57 24 18 INFO: Distances between consecutive points in test subject's space are 12 13 12 6 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5.nii.gz Done in 13.367 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ilf_AS.bbr.trk INFO: Rejected 42 streamlines for straying off mask INFO: Rejected 19 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 2098 total streamlines (min/mean/max length: 52/92/133) Processing pathway 4 of 18... Matching streamline ends INFO: Have 929 non-truncated streamlines (min/mean/max length: 57/100/127) INFO: Center of mass of start points: (46+/-8, 140+/-6, 42+/-10) INFO: Center of mass of midpoints: (47+/-3, 105+/-2, 58+/-4) INFO: Center of mass of end points: (65+/-12, 46+/-11, 73+/-11) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 28784 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 98 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0276307 INFO: Points where local peeks in curvature occur are 49 117 56 (curv = 0.0791144) 48 106 59 (curv = 0.0429386) 48 101 62 (curv = 0.0332069) 49 85 68 (curv = 0.0318208) 54 74 71 (curv = 0.0307752) INFO: Intermediate dominant points are 43 141 46 49 117 56 49 85 68 55 70 72 63 46 72 INFO: Final dominant points are 43 141 46 49 117 56 49 85 68 60 59 74 63 46 72 INFO: Selected control points are 43 141 46 48 116 55 49 86 68 60 60 74 63 46 72 INFO: Distances between consecutive points are 27 33 29 14 INFO: Selected control points in test subject's space are 28 62 1 30 52 6 31 40 12 35 30 15 37 24 15 INFO: Distances between consecutive points in test subject's space are 11 13 11 6 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5.nii.gz Done in 7.444 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from 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Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from 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Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from 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streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.unc_AS.bbr.trk INFO: Rejected 85 streamlines for straying off mask INFO: Rejected 28 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 5181 total streamlines (min/mean/max length: 8/57/105) Processing pathway 5 of 18... Matching streamline ends INFO: Have 3469 non-truncated streamlines (min/mean/max length: 8/56/101) INFO: Center of mass of start points: (128+/-7, 144+/-4, 41+/-5) INFO: Center of mass of midpoints: (125+/-3, 126+/-3, 55+/-3) INFO: Center of mass of end points: (113+/-11, 152+/-16, 59+/-5) INFO: Split streamlines into 10 segments Computing path histograms INFO: Total streamline volume is 22908 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 68 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0689837 INFO: Points where local peeks in curvature occur are 126 124 54 (curv = 0.148395) 124 130 60 (curv = 0.100467) 109 153 61 (curv = 0.0751884) INFO: Intermediate dominant points are 125 145 40 126 124 54 123 133 61 109 153 61 107 166 56 INFO: Final dominant points are 125 145 40 126 124 54 114 144 59 109 153 61 107 166 56 INFO: Selected control points are 125 145 40 128 125 53 115 144 61 109 152 60 107 166 56 INFO: Distances between consecutive points are 24 24 10 15 INFO: Selected control points in test subject's space are 61 64 1 62 56 6 57 64 8 54 67 7 54 73 5 INFO: Distances between consecutive points in test subject's space are 9 10 4 6 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.unc_AS_avg33_mni_bbr_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.unc_AS_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5.nii.gz Done in 16.294 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.unc_AS.bbr.trk INFO: Rejected 127 streamlines for straying off mask INFO: Rejected 114 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 6680 total streamlines (min/mean/max length: 8/62/107) Processing pathway 6 of 18... Matching streamline ends INFO: Have 4014 non-truncated streamlines (min/mean/max length: 8/60/107) INFO: Center of mass of start points: (53+/-6, 145+/-4, 42+/-6) INFO: Center of mass of midpoints: (55+/-2, 127+/-3, 55+/-3) INFO: Center of mass of end points: (70+/-9, 159+/-16, 57+/-4) INFO: Split streamlines into 10 segments Computing path histograms INFO: Total streamline volume is 26106 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 71 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0761357 INFO: Points where local peeks in curvature occur are 53 126 52 (curv = 0.135784) 55 128 60 (curv = 0.136733) 69 166 60 (curv = 0.148551) INFO: Intermediate dominant points are 52 142 45 55 128 60 62 139 61 70 157 59 74 175 54 INFO: Final dominant points are 52 142 45 55 128 60 68 147 61 69 166 60 74 175 54 WARN: Defaulting to equidistant control points INFO: Selected control points are 52 142 45 52 127 51 61 138 61 70 155 59 74 175 54 INFO: Distances between consecutive points are 16 17 19 21 INFO: Selected control points in test subject's space are 32 62 1 32 56 4 35 61 7 39 68 6 40 76 3 INFO: Distances between consecutive points in test subject's space are 7 7 8 9 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 72 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0711457 INFO: Points where local peeks in curvature occur are 51 125 50 (curv = 0.130848) 52 125 52 (curv = 0.131175) 55 128 61 (curv = 0.106522) 71 157 58 (curv = 0.0954563) 69 166 60 (curv = 0.157008) INFO: Intermediate dominant points are 52 141 44 52 125 52 63 139 61 69 166 60 74 175 55 INFO: Final dominant points are 52 141 44 52 125 52 71 157 58 69 166 60 74 175 55 INFO: Selected control points are 52 141 44 52 124 54 71 155 62 69 166 59 74 175 55 INFO: Distances between consecutive points are 20 37 12 11 INFO: Selected control points in test subject's space are 32 62 1 32 55 5 39 68 7 38 72 5 40 76 4 INFO: Distances between consecutive points in test subject's space are 8 15 5 5 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.unc_AS_avg33_mni_bbr_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.unc_AS_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5.nii.gz Done in 31.191 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fmajor_PP.bbr.trk INFO: Rejected 2515 streamlines for straying off mask INFO: Rejected 237 streamlines for reversing direction INFO: Rejected 165 streamlines as length outliers INFO: Have 6858 total streamlines (min/mean/max length: 87/135/161) Processing pathway 7 of 18... Matching streamline ends INFO: Have 4861 non-truncated streamlines (min/mean/max length: 87/137/164) INFO: Center of mass of start points: (102+/-7, 38+/-9, 98+/-17) INFO: Center of mass of midpoints: (90+/-3, 91+/-3, 84+/-3) INFO: Center of mass of end points: (74+/-6, 39+/-9, 99+/-18) INFO: Split streamlines into 37 segments Computing path histograms INFO: Total streamline volume is 61208 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.049381 INFO: Points where local peeks in curvature occur are 106 44 88 (curv = 0.0892097) 116 54 86 (curv = 0.0993473) 116 61 86 (curv = 0.0644371) 100 87 85 (curv = 0.0503332) 91 91 84 (curv = 0.0919606) 84 90 85 (curv = 0.0526852) 61 59 86 (curv = 0.103342) 69 47 90 (curv = 0.0847521) INFO: Intermediate dominant points are 99 39 109 116 54 86 111 71 86 91 91 84 67 75 86 61 59 86 72 38 112 INFO: Final dominant points are 99 39 109 116 54 86 104 83 85 91 91 84 65 72 87 61 59 86 72 38 112 WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 109 109 46 86 111 71 86 90 91 84 67 75 86 67 49 87 72 38 112 INFO: Distances between consecutive points are 26 25 29 28 26 28 INFO: Selected control points in test subject's space are 50 22 30 55 25 21 55 35 20 47 43 18 38 36 19 38 26 21 40 22 30 INFO: Distances between consecutive points in test subject's space are 11 10 11 11 10 10 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0500155 INFO: Points where local peeks in curvature occur are 105 43 89 (curv = 0.0815833) 117 56 86 (curv = 0.136918) 96 90 84 (curv = 0.0625254) 89 91 84 (curv = 0.0825719) 61 65 87 (curv = 0.0740974) 62 56 86 (curv = 0.0827118) 67 49 88 (curv = 0.0824247) INFO: Intermediate dominant points are 99 39 109 117 56 86 111 71 86 89 91 84 67 75 87 62 56 86 72 38 112 INFO: Final dominant points are 99 39 109 117 56 86 102 85 86 89 91 84 63 69 87 62 56 86 72 38 112 WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 109 108 45 86 112 69 87 95 90 84 69 78 87 63 54 86 72 38 112 INFO: Distances between consecutive points are 25 24 27 29 25 32 INFO: Selected control points in test subject's space are 50 22 30 54 24 21 56 34 21 49 42 18 39 37 20 36 28 20 40 22 30 INFO: Distances between consecutive points in test subject's space are 10 10 11 11 9 12 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 147 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0490525 INFO: Points where local peeks in curvature occur are 106 43 88 (curv = 0.0821836) 116 55 86 (curv = 0.129402) 95 90 84 (curv = 0.0613024) 88 91 84 (curv = 0.0869874) 61 60 86 (curv = 0.0762985) 65 52 86 (curv = 0.0869518) INFO: Intermediate dominant points are 99 39 109 116 55 86 111 72 86 88 91 84 65 73 87 65 52 86 72 38 112 INFO: Final dominant points are 99 39 109 116 55 86 102 85 85 88 91 84 62 66 87 65 52 86 72 38 112 WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 109 109 46 86 111 71 86 92 91 84 67 75 87 66 50 87 72 38 112 INFO: Distances between consecutive points are 26 25 28 30 25 28 INFO: Selected control points in test subject's space are 50 22 30 55 25 21 55 35 20 48 43 18 38 36 20 38 26 21 40 22 30 INFO: Distances between consecutive points in test subject's space are 11 10 11 12 10 10 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0489878 INFO: Points where local peeks in curvature occur are 107 44 86 (curv = 0.105289) 116 54 86 (curv = 0.0947602) 101 87 85 (curv = 0.0532037) 91 91 84 (curv = 0.0912266) 84 90 85 (curv = 0.0582558) 61 59 86 (curv = 0.103901) 64 52 86 (curv = 0.076793) INFO: Intermediate dominant points are 99 38 108 107 44 86 111 72 86 91 91 84 66 74 87 61 59 86 72 38 112 INFO: Final dominant points are 99 38 108 107 44 86 104 84 86 91 91 84 65 72 87 61 59 86 72 38 112 INFO: Selected control points are 99 38 108 111 46 87 108 82 87 89 91 84 65 74 88 63 56 83 72 38 112 INFO: Distances between consecutive points are 25 36 21 30 19 35 INFO: Selected control points in test subject's space are 50 22 30 56 25 22 54 39 20 46 43 18 37 36 20 36 28 19 40 22 30 INFO: Distances between consecutive points in test subject's space are 10 14 9 12 8 13 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/fmajor_PP_avg33_mni_bbr_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/fmajor_PP_avg33_mni_bbr_cpts_7.nii.gz Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.nii.gz Done in 54.712 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from 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Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from 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streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fminor_PP.bbr.trk INFO: Rejected 823 streamlines for straying off mask INFO: Rejected 417 streamlines for reversing direction INFO: Rejected 69 streamlines as length outliers INFO: Have 26318 total streamlines (min/mean/max length: 49/91/120) Processing pathway 8 of 18... Matching streamline ends INFO: Have 17499 non-truncated streamlines (min/mean/max length: 52/90/122) INFO: Center of mass of start points: (103+/-5, 187+/-6, 75+/-12) INFO: Center of mass of midpoints: (90+/-2, 150+/-4, 76+/-3) INFO: Center of mass of end points: (78+/-5, 188+/-7, 76+/-11) INFO: Split streamlines into 23 segments Computing path histograms INFO: Total streamline volume is 69851 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 99 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0558321 INFO: Points where local peeks in curvature occur are 109 169 73 (curv = 0.0619395) 102 156 74 (curv = 0.0664315) 88 151 75 (curv = 0.0916227) 77 155 74 (curv = 0.0672784) 71 168 70 (curv = 0.129483) INFO: Intermediate dominant points are 105 193 74 102 156 74 88 151 75 71 168 70 77 194 86 INFO: Final dominant points are 105 193 74 102 156 74 77 155 74 71 168 70 77 194 86 INFO: Selected control points are 105 193 74 104 156 74 76 155 75 73 169 69 77 194 86 INFO: Distances between consecutive points are 37 28 16 30 INFO: Selected control points in test subject's space are 52 84 10 52 69 12 41 68 12 40 74 9 41 84 14 INFO: Distances between consecutive points in test subject's space are 15 11 7 11 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/fminor_PP_avg33_mni_bbr_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/fminor_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 483.487 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from 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streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.atr_PP.bbr.trk INFO: Rejected 89 streamlines for straying off mask INFO: Rejected 6 streamlines for reversing direction INFO: Rejected 49 streamlines as length outliers INFO: Have 13435 total streamlines (min/mean/max length: 30/61/94) Processing pathway 9 of 18... Matching streamline ends INFO: Have 4790 non-truncated streamlines (min/mean/max length: 37/68/92) INFO: Center of mass of start points: (116+/-12, 180+/-10, 75+/-13) INFO: Center of mass of midpoints: (106+/-3, 134+/-2, 79+/-6) INFO: Center of mass of end points: (97+/-2, 114+/-3, 78+/-6) INFO: Split streamlines into 17 segments Computing path histograms INFO: Total streamline volume is 43704 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 69 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0492409 INFO: Points where local peeks in curvature occur are 110 177 72 (curv = 0.092235) 114 169 75 (curv = 0.141218) 111 159 74 (curv = 0.054827) 110 142 79 (curv = 0.0746263) INFO: Intermediate dominant points are 107 186 78 114 169 75 111 152 77 110 142 79 98 116 78 INFO: Final dominant points are 107 186 78 114 169 75 111 152 77 110 142 79 98 116 78 INFO: Selected control points are 107 186 78 113 169 73 111 152 77 109 142 78 98 116 78 INFO: Distances between consecutive points are 19 18 10 28 INFO: Selected control points in test subject's space are 53 81 12 56 74 11 55 67 13 54 63 14 50 53 15 INFO: Distances between consecutive points in test subject's space are 8 7 4 11 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.atr_PP_avg33_mni_bbr_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.atr_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 95.259 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.atr_PP.bbr.trk INFO: Rejected 161 streamlines for straying off mask INFO: Rejected 21 streamlines for reversing direction INFO: Rejected 35 streamlines as length outliers INFO: Have 11795 total streamlines (min/mean/max length: 31/64/93) Processing pathway 10 of 18... Matching streamline ends INFO: Have 4788 non-truncated streamlines (min/mean/max length: 41/71/93) INFO: Center of mass of start points: (67+/-9, 185+/-10, 81+/-12) INFO: Center of mass of midpoints: (73+/-3, 135+/-2, 81+/-5) INFO: Center of mass of end points: (82+/-2, 115+/-3, 78+/-6) INFO: Split streamlines into 18 segments Computing path histograms INFO: Total streamline volume is 39215 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 78 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0499995 INFO: Points where local peeks in curvature occur are 72 181 82 (curv = 0.0965353) 70 174 81 (curv = 0.0603706) 67 166 78 (curv = 0.143715) 69 145 80 (curv = 0.0573847) INFO: Intermediate dominant points are 65 193 80 67 166 78 69 156 79 69 145 80 81 117 80 INFO: Final dominant points are 65 193 80 67 166 78 69 155 79 69 145 80 81 117 80 WARN: Defaulting to equidistant control points INFO: Selected control points are 65 193 80 71 176 82 69 157 79 72 137 80 81 117 80 INFO: Distances between consecutive points are 18 19 20 22 INFO: Selected control points in test subject's space are 36 84 12 39 77 13 38 69 13 39 61 14 43 53 15 INFO: Distances between consecutive points in test subject's space are 8 8 8 9 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 75 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0475231 INFO: Points where local peeks in curvature occur are 67 166 78 (curv = 0.139403) 69 145 80 (curv = 0.0592232) 79 125 78 (curv = 0.08025) INFO: Intermediate dominant points are 69 191 80 67 166 78 69 145 80 79 125 78 82 114 80 INFO: Final dominant points are 69 191 80 67 166 78 69 145 80 79 125 78 82 114 80 INFO: Selected control points are 69 191 80 69 165 80 69 145 80 78 126 79 82 114 80 INFO: Distances between consecutive points are 26 20 21 13 INFO: Selected control points in test subject's space are 38 83 12 38 72 13 38 64 14 42 57 15 44 52 16 INFO: Distances between consecutive points in test subject's space are 11 8 8 5 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.atr_PP_avg33_mni_bbr_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.atr_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 68.457 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ccg_PP.bbr.trk INFO: Rejected 39 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Rejected 1 streamlines as length outliers INFO: Have 5238 total streamlines (min/mean/max length: 25/68/135) Processing pathway 11 of 18... Matching streamline ends INFO: Have 1476 non-truncated streamlines (min/mean/max length: 55/86/135) INFO: Center of mass of start points: (99+/-4, 80+/-7, 103+/-7) INFO: Center of mass of midpoints: (96+/-2, 124+/-2, 105+/-2) INFO: Center of mass of end points: (97+/-5, 163+/-7, 86+/-8) INFO: Split streamlines into 22 segments Computing path histograms INFO: Total streamline volume is 20072 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 93 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0242846 INFO: Points where local peeks in curvature occur are 99 92 103 (curv = 0.0317396) 96 102 105 (curv = 0.0474075) 96 110 106 (curv = 0.0279286) 97 113 106 (curv = 0.0272309) 97 120 106 (curv = 0.0265721) 97 129 104 (curv = 0.0269178) 97 143 98 (curv = 0.0305111) 96 146 97 (curv = 0.0288442) 96 155 91 (curv = 0.0338547) INFO: Intermediate dominant points are 101 74 96 96 102 105 97 122 106 97 143 98 97 163 79 INFO: Final dominant points are 101 74 96 96 102 105 97 131 104 97 143 98 97 163 79 INFO: Selected control points are 101 74 96 97 102 106 97 130 104 96 143 100 97 163 79 INFO: Distances between consecutive points are 30 28 14 29 INFO: Selected control points in test subject's space are 51 36 24 49 48 26 49 59 24 49 64 22 49 72 13 INFO: Distances between consecutive points in test subject's space are 12 11 5 12 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 17.34 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from 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streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ccg_PP.bbr.trk INFO: Rejected 49 streamlines for straying off mask INFO: Rejected 8 streamlines for reversing direction INFO: Rejected 31 streamlines as length outliers INFO: Have 4334 total streamlines (min/mean/max length: 30/66/126) Processing pathway 12 of 18... Matching streamline ends INFO: Have 930 non-truncated streamlines (min/mean/max length: 56/83/126) INFO: Center of mass of start points: (81+/-4, 81+/-8, 100+/-9) INFO: Center of mass of midpoints: (83+/-1, 125+/-2, 106+/-2) INFO: Center of mass of end points: (83+/-4, 160+/-6, 89+/-8) INFO: Split streamlines into 22 segments Computing path histograms INFO: Total streamline volume is 19053 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 80 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0293551 INFO: Points where local peeks in curvature occur are 83 107 107 (curv = 0.0460433) 83 121 107 (curv = 0.0398419) 83 124 106 (curv = 0.0366825) 83 139 99 (curv = 0.0407851) 79 151 93 (curv = 0.0987555) INFO: Intermediate dominant points are 80 82 99 83 107 107 83 123 106 79 151 93 86 162 94 INFO: Final dominant points are 80 82 99 83 107 107 82 141 98 79 151 93 86 162 94 INFO: Selected control points are 80 82 99 82 108 108 83 140 99 78 151 92 86 162 94 INFO: Distances between consecutive points are 28 33 14 14 INFO: Selected control points in test subject's space are 43 39 24 43 50 26 43 63 21 42 67 18 45 72 18 INFO: Distances between consecutive points in test subject's space are 11 14 5 6 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 11.741 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from 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Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from 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streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cab_PP.bbr.trk INFO: Rejected 70 streamlines for straying off mask INFO: Rejected 63 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 4128 total streamlines (min/mean/max length: 2/45/95) Processing pathway 13 of 18... Matching streamline ends INFO: Have 1299 non-truncated streamlines (min/mean/max length: 17/53/89) INFO: Center of mass of start points: (109+/-6, 82+/-12, 75+/-13) INFO: Center of mass of midpoints: (111+/-2, 99+/-5, 58+/-5) INFO: Center of mass of end points: (115+/-5, 121+/-13, 42+/-11) INFO: Split streamlines into 12 segments Computing path histograms INFO: Total streamline volume is 17874 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 64 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0346547 INFO: Points where local peeks in curvature occur are 114 104 48 (curv = 0.0431092) 120 114 42 (curv = 0.105698) INFO: Intermediate dominant points are 110 72 86 109 89 66 120 114 42 116 129 40 INFO: Final dominant points are 110 72 86 113 103 49 120 114 42 116 129 40 WARN: Defaulting to equidistant control points INFO: Selected control points are 110 72 86 109 89 66 116 107 46 116 129 40 INFO: Distances between consecutive points are 26 28 23 INFO: Selected control points in test subject's space are 55 35 20 55 42 12 58 49 4 58 57 1 INFO: Distances between consecutive points in test subject's space are 11 11 9 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 56 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0265142 INFO: Points where local peeks in curvature occur are 112 107 49 (curv = 0.0303744) 114 116 43 (curv = 0.048484) 114 121 41 (curv = 0.0383623) INFO: Intermediate dominant points are 110 79 74 111 96 60 114 116 43 115 132 37 INFO: Final dominant points are 110 79 74 112 106 50 114 116 43 115 132 37 WARN: Defaulting to equidistant control points INFO: Selected control points are 110 79 74 111 95 61 113 112 45 115 132 37 INFO: Distances between consecutive points are 21 23 22 INFO: Selected control points in test subject's space are 55 38 16 56 44 10 57 51 4 57 59 0 INFO: Distances between consecutive points in test subject's space are 9 9 9 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 53 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0268839 INFO: Points where local peeks in curvature occur are 112 99 57 (curv = 0.0276596) 112 107 50 (curv = 0.0368998) 115 116 43 (curv = 0.0473486) 114 122 41 (curv = 0.0400826) INFO: Intermediate dominant points are 110 79 73 112 107 50 115 116 43 115 131 37 INFO: Final dominant points are 110 79 73 112 107 50 115 116 43 115 131 37 WARN: Defaulting to equidistant control points INFO: Selected control points are 110 79 73 111 97 59 114 113 45 115 131 37 INFO: Distances between consecutive points are 23 21 20 INFO: Selected control points in test subject's space are 55 38 15 56 45 9 57 51 4 57 58 0 INFO: Distances between consecutive points in test subject's space are 9 8 8 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 50 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0254225 INFO: Points where local peeks in curvature occur are 108 94 63 (curv = 0.0581688) 110 103 54 (curv = 0.0334532) 114 115 45 (curv = 0.0483893) INFO: Intermediate dominant points are 107 80 77 108 94 63 114 115 45 116 127 41 INFO: Final dominant points are 107 80 77 108 94 63 114 115 45 116 127 41 WARN: Defaulting to equidistant control points INFO: Selected control points are 107 80 77 108 94 63 113 109 50 116 127 41 INFO: Distances between consecutive points are 20 20 20 INFO: Selected control points in test subject's space are 54 38 17 54 44 11 57 49 6 58 57 2 INFO: Distances between consecutive points in test subject's space are 8 8 9 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 54 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0290931 INFO: Points where local peeks in curvature occur are 108 95 62 (curv = 0.0480015) 114 114 45 (curv = 0.0493715) INFO: Intermediate dominant points are 107 80 77 108 95 62 114 114 45 116 126 41 INFO: Final dominant points are 107 80 77 108 95 62 114 114 45 116 126 41 WARN: Defaulting to equidistant control points INFO: Selected control points are 107 80 77 108 92 64 112 108 51 116 126 41 INFO: Distances between consecutive points are 18 21 21 INFO: Selected control points in test subject's space are 54 38 17 54 43 11 56 49 6 58 56 2 INFO: Distances between consecutive points in test subject's space are 8 8 8 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 51 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0227863 INFO: Points where local peeks in curvature occur are 112 107 50 (curv = 0.0337055) 114 113 45 (curv = 0.0395116) 114 121 41 (curv = 0.025382) INFO: Intermediate dominant points are 109 80 72 112 100 57 114 113 45 115 131 38 INFO: Final dominant points are 109 80 72 112 105 51 114 113 45 115 131 38 WARN: Defaulting to equidistant control points INFO: Selected control points are 109 80 72 112 98 58 114 113 45 115 131 38 INFO: Distances between consecutive points are 23 20 19 INFO: Selected control points in test subject's space are 55 38 15 56 45 9 57 51 4 57 58 0 INFO: Distances between consecutive points in test subject's space are 9 8 8 WARN: Could not find satisfactory control point fit - try 6 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 61 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0241761 INFO: Points where local peeks in curvature occur are 105 88 66 (curv = 0.0598608) 113 108 45 (curv = 0.0407339) 115 115 42 (curv = 0.0557064) 117 123 41 (curv = 0.0367221) INFO: Intermediate dominant points are 106 77 75 105 88 66 115 115 42 117 133 38 INFO: Final dominant points are 106 77 75 105 88 66 115 115 42 117 133 38 WARN: Defaulting to equidistant control points INFO: Selected control points are 106 77 75 108 96 57 115 114 43 117 133 38 INFO: Distances between consecutive points are 26 24 20 INFO: Selected control points in test subject's space are 54 37 16 54 44 9 57 51 3 58 59 0 INFO: Distances between consecutive points in test subject's space are 10 10 9 WARN: Could not find satisfactory control point fit - try 7 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 49 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0298169 INFO: Points where local peeks in curvature occur are 115 109 44 (curv = 0.0620953) 114 118 39 (curv = 0.0635284) INFO: Intermediate dominant points are 108 83 73 111 98 57 114 118 39 115 127 38 INFO: Final dominant points are 108 83 73 115 110 43 114 118 39 115 127 38 WARN: Defaulting to equidistant control points INFO: Selected control points are 108 83 73 111 98 57 115 111 42 115 127 38 INFO: Distances between consecutive points are 22 20 16 INFO: Selected control points in test subject's space are 54 39 15 56 45 9 57 50 3 57 57 0 INFO: Distances between consecutive points in test subject's space are 9 8 8 WARN: Could not find satisfactory control point fit - try 8 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 58 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0483925 INFO: Points where local peeks in curvature occur are 116 110 45 (curv = 0.0855854) 120 118 45 (curv = 0.124355) INFO: Intermediate dominant points are 105 86 76 112 96 58 120 118 45 116 131 36 INFO: Final dominant points are 105 86 76 116 108 46 120 118 45 116 131 36 WARN: Defaulting to equidistant control points INFO: Selected control points are 105 86 76 112 96 58 118 113 45 116 131 36 INFO: Distances between consecutive points are 22 22 20 INFO: Selected control points in test subject's space are 53 41 16 56 44 9 59 51 4 58 58 0 INFO: Distances between consecutive points in test subject's space are 8 9 8 WARN: Could not find satisfactory control point fit - try 9 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 53 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0240422 INFO: Points where local peeks in curvature occur are 112 106 50 (curv = 0.0269974) 115 116 44 (curv = 0.0463711) INFO: Intermediate dominant points are 112 81 72 112 106 50 115 116 44 116 133 38 INFO: Final dominant points are 112 81 72 112 106 50 115 116 44 116 133 38 WARN: Defaulting to equidistant control points INFO: Selected control points are 112 81 72 112 98 58 115 115 44 116 133 38 INFO: Distances between consecutive points are 22 22 19 INFO: Selected control points in test subject's space are 56 39 15 56 45 9 57 52 3 58 59 0 INFO: Distances between consecutive points in test subject's space are 8 9 8 WARN: Could not find satisfactory control point fit - try 10 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 55 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0432807 INFO: Points where local peeks in curvature occur are 109 92 67 (curv = 0.0944348) 114 116 39 (curv = 0.0806554) INFO: Intermediate dominant points are 112 82 74 109 92 67 114 116 39 120 126 42 INFO: Final dominant points are 112 82 74 109 92 67 114 116 39 120 126 42 WARN: Defaulting to equidistant control points INFO: Selected control points are 112 82 74 111 97 61 114 112 42 120 126 42 INFO: Distances between consecutive points are 20 24 15 INFO: Selected control points in test subject's space are 56 39 15 56 45 10 57 51 3 59 56 2 INFO: Distances between consecutive points in test subject's space are 8 9 5 WARN: Could not find satisfactory control point fit - try 11 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 57 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0275015 INFO: Points where local peeks in curvature occur are 113 108 48 (curv = 0.0358726) 115 116 43 (curv = 0.0680362) INFO: Intermediate dominant points are 112 81 72 112 98 58 115 116 43 116 133 38 INFO: Final dominant points are 112 81 72 113 107 49 115 116 43 116 133 38 WARN: Defaulting to equidistant control points INFO: Selected control points are 112 81 72 112 97 59 114 114 45 116 133 38 INFO: Distances between consecutive points are 21 22 20 INFO: Selected control points in test subject's space are 56 39 15 56 45 9 57 51 4 58 59 0 INFO: Distances between consecutive points in test subject's space are 8 8 9 WARN: Could not find satisfactory control point fit - try 12 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 45 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0312852 INFO: Points where local peeks in curvature occur are 116 112 42 (curv = 0.0820371) INFO: Intermediate dominant points are 108 83 73 111 98 57 116 112 42 115 125 40 INFO: Final dominant points are 108 83 73 113 104 49 116 112 42 115 125 40 WARN: Defaulting to equidistant control points INFO: Selected control points are 108 83 73 111 97 58 115 109 44 115 125 40 INFO: Distances between consecutive points are 21 19 16 INFO: Selected control points in test subject's space are 54 39 15 56 45 9 57 49 3 57 56 1 INFO: Distances between consecutive points in test subject's space are 9 7 7 WARN: Could not find satisfactory control point fit - try 13 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 49 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0306373 INFO: Points where local peeks in curvature occur are 108 93 63 (curv = 0.0548974) 114 111 48 (curv = 0.0436385) 114 116 44 (curv = 0.0425369) INFO: Intermediate dominant points are 110 81 73 108 93 63 114 111 48 116 126 41 INFO: Final dominant points are 110 81 73 108 93 63 114 111 48 116 126 41 WARN: Defaulting to equidistant control points INFO: Selected control points are 110 81 73 109 96 61 114 111 48 116 126 41 INFO: Distances between consecutive points are 19 20 17 INFO: Selected control points in test subject's space are 55 39 15 55 44 10 57 50 5 58 56 2 INFO: Distances between consecutive points in test subject's space are 7 8 7 WARN: Could not find satisfactory control point fit - try 14 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 45 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0297659 INFO: Points where local peeks in curvature occur are 118 111 43 (curv = 0.0683016) INFO: Intermediate dominant points are 106 83 76 110 97 60 118 111 43 119 122 40 INFO: Final dominant points are 106 83 76 113 104 50 118 111 43 119 122 40 WARN: Defaulting to equidistant control points INFO: Selected control points are 106 83 76 110 96 61 115 106 47 119 122 40 INFO: Distances between consecutive points are 20 18 18 INFO: Selected control points in test subject's space are 53 39 16 55 44 10 57 48 5 59 55 1 INFO: Distances between consecutive points in test subject's space are 8 7 8 WARN: Could not find satisfactory control point fit - try 15 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 54 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0416222 INFO: Points where local peeks in curvature occur are 104 89 67 (curv = 0.075919) 113 103 51 (curv = 0.0482959) 113 115 43 (curv = 0.0856579) INFO: Intermediate dominant points are 111 76 78 104 89 67 113 115 43 114 127 46 INFO: Final dominant points are 111 76 78 104 89 67 113 115 43 114 127 46 WARN: Defaulting to equidistant control points INFO: Selected control points are 111 76 78 106 92 64 113 106 48 114 127 46 INFO: Distances between consecutive points are 22 22 21 INFO: Selected control points in test subject's space are 55 37 17 54 43 11 57 48 5 57 57 3 INFO: Distances between consecutive points in test subject's space are 9 8 9 WARN: Could not find satisfactory control point fit - try 16 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 50 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0223194 INFO: Points where local peeks in curvature occur are 116 120 41 (curv = 0.0698765) INFO: Intermediate dominant points are 108 84 71 111 101 58 116 120 41 116 132 35 INFO: Final dominant points are 108 84 71 114 111 47 116 120 41 116 132 35 WARN: Defaulting to equidistant control points INFO: Selected control points are 108 84 71 111 100 59 114 115 44 116 132 35 INFO: Distances between consecutive points are 20 21 19 INFO: Selected control points in test subject's space are 54 40 14 56 46 9 57 52 3 58 58 -1 INFO: Distances between consecutive points in test subject's space are 8 9 7 WARN: Could not find satisfactory control point fit - try 17 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 45 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0237208 INFO: Points where local peeks in curvature occur are 110 100 58 (curv = 0.0304411) INFO: Intermediate dominant points are 109 81 75 110 100 58 114 108 50 115 122 42 INFO: Final dominant points are 109 81 75 110 100 58 115 114 45 115 122 42 WARN: Defaulting to equidistant control points INFO: Selected control points are 109 81 75 109 93 63 113 106 52 115 122 42 INFO: Distances between consecutive points are 17 17 19 INFO: Selected control points in test subject's space are 55 39 16 55 43 11 56 48 6 57 55 2 INFO: Distances between consecutive points in test subject's space are 6 7 8 WARN: Could not find satisfactory control point fit - try 18 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 48 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0269386 INFO: Points where local peeks in curvature occur are 109 95 62 (curv = 0.0345701) 111 103 54 (curv = 0.0291516) 114 111 48 (curv = 0.0357522) 114 115 45 (curv = 0.0454686) INFO: Intermediate dominant points are 110 81 73 109 95 62 114 115 45 116 126 41 INFO: Final dominant points are 110 81 73 109 95 62 114 115 45 116 126 41 WARN: Defaulting to equidistant control points INFO: Selected control points are 110 81 73 109 96 61 114 110 49 116 126 41 INFO: Distances between consecutive points are 19 19 18 INFO: Selected control points in test subject's space are 55 39 15 55 44 10 57 50 5 58 56 2 INFO: Distances between consecutive points in test subject's space are 7 8 7 WARN: Could not find satisfactory control point fit - try 19 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 53 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0360549 INFO: Points where local peeks in curvature occur are 109 102 55 (curv = 0.0521167) 117 115 41 (curv = 0.0800179) INFO: Intermediate dominant points are 113 83 74 109 102 55 117 115 41 116 128 36 INFO: Final dominant points are 113 83 74 109 102 55 117 115 41 116 128 36 WARN: Defaulting to equidistant control points INFO: Selected control points are 113 83 74 109 98 60 116 111 44 116 128 36 INFO: Distances between consecutive points are 21 22 19 INFO: Selected control points in test subject's space are 56 40 15 55 45 10 58 50 3 58 57 0 INFO: Distances between consecutive points in test subject's space are 7 9 8 WARN: Could not find satisfactory control point fit - try 20 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 60 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0304231 INFO: Points where local peeks in curvature occur are 104 90 72 (curv = 0.0504484) 118 116 44 (curv = 0.0762795) INFO: Intermediate dominant points are 106 77 86 104 90 72 118 116 44 120 131 38 INFO: Final dominant points are 106 77 86 104 90 72 118 116 44 120 131 38 WARN: Defaulting to equidistant control points INFO: Selected control points are 106 77 86 106 93 68 117 110 49 120 131 38 INFO: Distances between consecutive points are 24 28 24 INFO: Selected control points in test subject's space are 53 37 20 54 43 13 58 50 5 59 58 0 INFO: Distances between consecutive points in test subject's space are 9 11 9 WARN: Could not find satisfactory control point fit - try 21 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 49 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0198901 INFO: Points where local peeks in curvature occur are 110 99 61 (curv = 0.0221851) 114 118 44 (curv = 0.068505) INFO: Intermediate dominant points are 109 81 74 110 99 61 114 118 44 115 131 41 INFO: Final dominant points are 109 81 74 110 99 61 114 118 44 115 131 41 WARN: Defaulting to equidistant control points INFO: Selected control points are 109 81 74 110 97 62 113 114 47 115 131 41 INFO: Distances between consecutive points are 20 23 18 INFO: Selected control points in test subject's space are 55 39 15 55 45 10 57 51 4 57 58 1 INFO: Distances between consecutive points in test subject's space are 8 9 8 WARN: Could not find satisfactory control point fit - try 22 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 44 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0325906 INFO: Points where local peeks in curvature occur are 114 106 47 (curv = 0.0472001) 116 113 43 (curv = 0.0867797) INFO: Intermediate dominant points are 111 84 71 112 98 57 116 113 43 115 125 41 INFO: Final dominant points are 111 84 71 114 105 48 116 113 43 115 125 41 WARN: Defaulting to equidistant control points INFO: Selected control points are 111 84 71 112 98 58 115 109 45 115 125 41 INFO: Distances between consecutive points are 19 17 16 INFO: Selected control points in test subject's space are 56 40 14 56 45 9 57 49 4 57 56 2 INFO: Distances between consecutive points in test subject's space are 7 6 7 WARN: Could not find satisfactory control point fit - try 23 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 59 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0401018 INFO: Points where local peeks in curvature occur are 119 109 45 (curv = 0.0683826) 122 117 45 (curv = 0.0612298) INFO: Intermediate dominant points are 106 80 78 112 95 57 119 109 45 118 131 36 INFO: Final dominant points are 106 80 78 113 99 53 119 109 45 118 131 36 WARN: Defaulting to equidistant control points INFO: Selected control points are 106 80 78 112 94 58 121 113 45 118 131 36 INFO: Distances between consecutive points are 25 25 20 INFO: Selected control points in test subject's space are 53 38 17 56 44 9 60 51 4 59 58 0 INFO: Distances between consecutive points in test subject's space are 10 9 8 WARN: Could not find satisfactory control point fit - try 24 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 44 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0348943 INFO: Points where local peeks in curvature occur are 117 113 42 (curv = 0.111705) INFO: Intermediate dominant points are 111 84 71 111 97 58 117 113 42 115 125 41 INFO: Final dominant points are 111 84 71 114 105 49 117 113 42 115 125 41 WARN: Defaulting to equidistant control points INFO: Selected control points are 111 84 71 111 97 59 116 109 45 115 125 41 INFO: Distances between consecutive points are 18 19 17 INFO: Selected control points in test subject's space are 56 40 14 56 45 9 58 49 4 57 56 2 INFO: Distances between consecutive points in test subject's space are 7 7 7 WARN: Could not find satisfactory control point fit - try 25 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 48 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0250544 INFO: Points where local peeks in curvature occur are 105 85 69 (curv = 0.0735419) 115 108 47 (curv = 0.0441818) INFO: Intermediate dominant points are 106 77 75 105 85 69 115 108 47 119 120 44 INFO: Final dominant points are 106 77 75 105 85 69 115 108 47 119 120 44 WARN: Defaulting to equidistant control points INFO: Selected control points are 106 77 75 107 90 65 113 103 51 119 120 44 INFO: Distances between consecutive points are 16 20 19 INFO: Selected control points in test subject's space are 54 37 16 54 42 12 57 47 6 59 54 3 INFO: Distances between consecutive points in test subject's space are 6 8 8 WARN: Could not find satisfactory control point fit - try 26 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 48 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0344765 INFO: Points where local peeks in curvature occur are 110 104 51 (curv = 0.0383674) 117 115 41 (curv = 0.0873465) INFO: Intermediate dominant points are 113 83 74 110 104 51 117 115 41 116 126 37 INFO: Final dominant points are 113 83 74 110 104 51 117 115 41 116 126 37 WARN: Defaulting to equidistant control points INFO: Selected control points are 113 83 74 109 97 61 114 109 45 116 126 37 INFO: Distances between consecutive points are 20 21 19 INFO: Selected control points in test subject's space are 56 40 15 55 45 10 57 49 4 58 56 0 INFO: Distances between consecutive points in test subject's space are 7 7 8 WARN: Could not find satisfactory control point fit - try 27 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 50 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0248735 INFO: Points where local peeks in curvature occur are 112 97 59 (curv = 0.0287566) 114 116 44 (curv = 0.0406261) INFO: Intermediate dominant points are 112 82 70 112 97 59 114 116 44 115 133 38 INFO: Final dominant points are 112 82 70 112 97 59 114 116 44 115 133 38 WARN: Defaulting to equidistant control points INFO: Selected control points are 112 82 70 112 99 58 114 115 44 115 133 38 INFO: Distances between consecutive points are 21 21 19 INFO: Selected control points in test subject's space are 56 39 14 56 46 9 57 52 3 57 59 0 INFO: Distances between consecutive points in test subject's space are 9 9 8 WARN: Could not find satisfactory control point fit - try 28 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 51 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0247283 INFO: Points where local peeks in curvature occur are 112 96 60 (curv = 0.0282459) 114 118 43 (curv = 0.0428701) INFO: Intermediate dominant points are 112 82 70 112 96 60 114 118 43 115 133 38 INFO: Final dominant points are 112 82 70 112 96 60 114 118 43 115 133 38 WARN: Defaulting to equidistant control points INFO: Selected control points are 112 82 70 112 99 58 114 115 44 115 133 38 INFO: Distances between consecutive points are 21 21 19 INFO: Selected control points in test subject's space are 56 39 14 56 46 9 57 52 3 57 59 0 INFO: Distances between consecutive points in test subject's space are 9 9 8 WARN: Could not find satisfactory control point fit - try 29 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 53 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0196844 INFO: Points where local peeks in curvature occur are 106 85 70 (curv = 0.0237628) 107 93 64 (curv = 0.044997) INFO: Intermediate dominant points are 106 74 85 107 93 64 111 102 52 114 117 37 INFO: Final dominant points are 106 74 85 107 93 64 113 109 44 114 117 37 WARN: Defaulting to equidistant dominant points WARN: Defaulting to equidistant control points INFO: Selected control points are 106 74 85 107 86 69 111 101 53 114 117 37 INFO: Distances between consecutive points are 20 22 23 INFO: Selected control points in test subject's space are 53 36 20 54 41 13 56 46 7 57 52 1 INFO: Distances between consecutive points in test subject's space are 9 8 9 WARN: Could not find satisfactory control point fit - try 30 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 42 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0290701 INFO: Points where local peeks in curvature occur are 118 112 43 (curv = 0.0769197) INFO: Intermediate dominant points are 107 85 74 111 96 62 118 112 43 119 121 42 INFO: Final dominant points are 107 85 74 114 105 49 118 112 43 119 121 42 INFO: Selected control points are 107 85 74 113 104 50 114 108 42 119 121 42 INFO: Distances between consecutive points are 31 9 14 INFO: Selected control points in test subject's space are 54 40 15 57 47 6 57 49 3 59 54 2 INFO: Distances between consecutive points in test subject's space are 12 4 5 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.cab_PP_avg33_mni_bbr_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.cab_PP_avg33_mni_bbr_cpts_4.nii.gz Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4.nii.gz Done in 13.43 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cab_PP.bbr.trk INFO: Rejected 552 streamlines for straying off mask INFO: Rejected 64 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 3620 total streamlines (min/mean/max length: 13/43/98) Processing pathway 14 of 18... Matching streamline ends INFO: Have 1084 non-truncated streamlines (min/mean/max length: 26/54/97) INFO: Center of mass of start points: (70+/-5, 81+/-7, 77+/-8) INFO: Center of mass of midpoints: (67+/-2, 101+/-2, 56+/-2) INFO: Center of mass of end points: (63+/-4, 126+/-7, 38+/-4) INFO: Split streamlines into 13 segments Computing path histograms INFO: Total streamline volume is 15810 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 46 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.027349 INFO: Points where local peeks in curvature occur are 67 105 49 (curv = 0.0296015) 65 115 42 (curv = 0.0629775) INFO: Intermediate dominant points are 67 82 75 70 96 60 65 115 42 66 124 41 INFO: Final dominant points are 67 82 75 66 107 48 65 115 42 66 124 41 INFO: Selected control points are 67 82 75 68 106 47 62 111 42 66 124 41 INFO: Distances between consecutive points are 37 9 14 INFO: Selected control points in test subject's space are 38 39 15 39 48 4 36 50 2 38 55 1 INFO: Distances between consecutive points in test subject's space are 14 4 5 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.cab_PP_avg33_mni_bbr_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.cab_PP_avg33_mni_bbr_cpts_4.nii.gz Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4.nii.gz Done in 7.538 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slfp_PP.bbr.trk INFO: Rejected 202 streamlines for straying off mask INFO: Rejected 705 streamlines for reversing direction INFO: Rejected 46 streamlines as length outliers INFO: Have 9314 total streamlines (min/mean/max length: 20/59/101) Processing pathway 15 of 18... Matching streamline ends INFO: Have 3857 non-truncated streamlines (min/mean/max length: 26/65/101) INFO: Center of mass of start points: (145+/-6, 127+/-5, 98+/-12) INFO: Center of mass of midpoints: (128+/-4, 106+/-4, 102+/-4) INFO: Center of mass of end points: (142+/-10, 84+/-10, 111+/-12) INFO: Split streamlines into 14 segments Computing path histograms INFO: Total streamline volume is 51087 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 72 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0726492 INFO: Points where local peeks in curvature occur are 128 116 102 (curv = 0.0902989) 128 96 106 (curv = 0.117742) 130 83 99 (curv = 0.201588) INFO: Intermediate dominant points are 148 128 102 128 116 102 128 98 105 130 83 99 150 85 107 INFO: Final dominant points are 148 128 102 128 116 102 127 91 104 130 83 99 150 85 107 INFO: Selected control points are 148 128 102 128 115 101 128 92 105 130 83 98 150 85 107 INFO: Distances between consecutive points are 24 23 12 22 INFO: Selected control points in test subject's space are 69 59 24 62 53 24 62 44 27 63 40 24 70 41 28 INFO: Distances between consecutive points in test subject's space are 9 9 5 8 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 45.833 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slfp_PP.bbr.trk INFO: Rejected 328 streamlines for straying off mask INFO: Rejected 423 streamlines for reversing direction INFO: Rejected 90 streamlines as length outliers INFO: Have 14781 total streamlines (min/mean/max length: 18/64/98) Processing pathway 16 of 18... Matching streamline ends INFO: Have 6988 non-truncated streamlines (min/mean/max length: 27/69/101) INFO: Center of mass of start points: (34+/-7, 130+/-6, 98+/-12) INFO: Center of mass of midpoints: (52+/-4, 109+/-3, 103+/-3) INFO: Center of mass of end points: (39+/-9, 81+/-10, 113+/-12) INFO: Split streamlines into 15 segments Computing path histograms INFO: Total streamline volume is 65701 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 73 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0597307 INFO: Points where local peeks in curvature occur are 50 119 100 (curv = 0.116181) 51 90 103 (curv = 0.0712553) 53 81 102 (curv = 0.194926) INFO: Intermediate dominant points are 33 127 97 50 119 100 52 99 105 53 81 102 39 73 122 INFO: Final dominant points are 33 127 97 50 119 100 51 90 103 53 81 102 39 73 122 WARN: Defaulting to equidistant control points INFO: Selected control points are 33 127 97 51 117 101 52 99 105 53 80 103 39 73 122 INFO: Distances between consecutive points are 21 18 19 25 INFO: Selected control points in test subject's space are 24 57 20 31 53 22 31 46 25 32 38 25 26 36 32 INFO: Distances between consecutive points in test subject's space are 8 8 8 9 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 76 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0605977 INFO: Points where local peeks in curvature occur are 40 123 95 (curv = 0.0756807) 51 118 101 (curv = 0.0874053) 54 111 103 (curv = 0.077998) 53 97 106 (curv = 0.0608137) 52 79 102 (curv = 0.133891) INFO: Intermediate dominant points are 31 131 96 51 118 101 53 97 106 52 79 102 42 73 114 INFO: Final dominant points are 31 131 96 51 118 101 53 97 106 52 79 102 42 73 114 INFO: Selected control points are 31 131 96 51 117 100 54 98 106 52 79 102 42 73 114 INFO: Distances between consecutive points are 25 20 20 17 INFO: Selected control points in test subject's space are 23 59 20 31 53 22 32 46 25 31 38 25 27 36 29 INFO: Distances between consecutive points in test subject's space are 10 8 8 6 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 132.925 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slft_PP.bbr.trk INFO: Rejected 352 streamlines for straying off mask INFO: Rejected 78 streamlines for reversing direction INFO: Rejected 53 streamlines as length outliers INFO: Have 7411 total streamlines (min/mean/max length: 34/90/136) Processing pathway 17 of 18... Matching streamline ends INFO: Have 4600 non-truncated streamlines (min/mean/max length: 34/92/136) INFO: Center of mass of start points: (144+/-7, 132+/-6, 94+/-10) INFO: Center of mass of midpoints: (125+/-2, 96+/-4, 101+/-3) INFO: Center of mass of end points: (147+/-7, 84+/-13, 65+/-9) INFO: Split streamlines into 23 segments Computing path histograms INFO: Total streamline volume is 46513 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 92 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0469502 INFO: Points where local peeks in curvature occur are 128 119 97 (curv = 0.107817) 123 92 101 (curv = 0.0917098) 124 84 94 (curv = 0.0707617) INFO: Intermediate dominant points are 141 137 86 128 119 97 123 92 101 129 80 84 142 87 63 INFO: Final dominant points are 141 137 86 128 119 97 123 92 101 135 81 74 142 87 63 INFO: Selected control points are 141 137 86 130 118 96 123 91 101 134 79 75 142 87 63 INFO: Distances between consecutive points are 24 28 31 16 INFO: Selected control points in test subject's space are 67 62 18 62 54 22 60 43 25 65 38 16 68 41 12 INFO: Distances between consecutive points in test subject's space are 10 12 11 6 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.slft_PP_avg33_mni_bbr_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.slft_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 44.989 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slft_PP.bbr.trk INFO: Rejected 42 streamlines for straying off mask INFO: Rejected 16 streamlines for reversing direction INFO: Rejected 37 streamlines as length outliers INFO: Have 3047 total streamlines (min/mean/max length: 46/90/131) Processing pathway 18 of 18... Matching streamline ends INFO: Have 1727 non-truncated streamlines (min/mean/max length: 55/92/134) INFO: Center of mass of start points: (39+/-9, 135+/-8, 97+/-15) INFO: Center of mass of midpoints: (56+/-2, 96+/-3, 103+/-3) INFO: Center of mass of end points: (31+/-6, 81+/-9, 71+/-8) INFO: Split streamlines into 24 segments Computing path histograms INFO: Total streamline volume is 31469 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 93 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0544081 INFO: Points where local peeks in curvature occur are 56 126 95 (curv = 0.115336) 58 99 102 (curv = 0.108833) 52 87 98 (curv = 0.0917009) 51 82 87 (curv = 0.0588861) INFO: Intermediate dominant points are 42 138 83 56 126 95 58 99 102 52 87 98 29 83 70 INFO: Final dominant points are 42 138 83 56 126 95 58 99 102 52 87 98 29 83 70 WARN: Defaulting to equidistant control points INFO: Selected control points are 42 138 83 54 121 98 57 97 102 50 81 86 29 83 70 INFO: Distances between consecutive points are 26 25 24 26 INFO: Selected control points in test subject's space are 27 61 15 32 55 21 33 45 24 31 38 19 23 39 12 INFO: Distances between consecutive points in test subject's space are 10 10 9 11 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 97 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.057567 INFO: Points where local peeks in curvature occur are 53 126 94 (curv = 0.169117) 57 98 102 (curv = 0.0997653) 51 85 95 (curv = 0.0815488) 48 81 82 (curv = 0.0588011) INFO: Intermediate dominant points are 31 138 86 53 126 94 57 98 102 48 81 82 27 86 70 INFO: Final dominant points are 31 138 86 53 126 94 57 98 102 48 81 82 27 86 70 WARN: Defaulting to equidistant control points INFO: Selected control points are 31 138 86 53 123 96 57 99 101 49 81 84 27 86 70 INFO: Distances between consecutive points are 28 25 26 27 INFO: Selected control points in test subject's space are 23 61 16 32 56 20 33 46 23 31 38 18 22 40 12 INFO: Distances between consecutive points in test subject's space are 11 10 10 11 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 86 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0541027 INFO: Points where local peeks in curvature occur are 54 114 102 (curv = 0.111201) 57 97 104 (curv = 0.0718246) 55 86 101 (curv = 0.0879416) 54 82 96 (curv = 0.0682463) 51 82 83 (curv = 0.0671557) INFO: Intermediate dominant points are 31 131 99 54 114 102 55 86 101 51 82 83 34 79 75 INFO: Final dominant points are 31 131 99 54 114 102 55 86 101 51 82 83 34 79 75 WARN: Defaulting to equidistant control points INFO: Selected control points are 31 131 99 53 116 101 57 93 103 51 81 86 34 79 75 INFO: Distances between consecutive points are 27 23 22 20 INFO: Selected control points in test subject's space are 23 59 21 32 53 23 33 44 24 31 38 19 25 37 14 INFO: Distances between consecutive points in test subject's space are 11 9 8 8 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 86 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0543583 INFO: Points where local peeks in curvature occur are 53 115 102 (curv = 0.101316) 53 106 104 (curv = 0.0612415) 56 96 104 (curv = 0.0706371) 56 91 103 (curv = 0.060168) 54 85 101 (curv = 0.0837136) 53 80 91 (curv = 0.0613242) INFO: Intermediate dominant points are 33 129 101 53 115 102 54 85 101 52 80 83 33 75 75 INFO: Final dominant points are 33 129 101 53 115 102 54 85 101 44 82 73 33 75 75 WARN: Defaulting to equidistant control points INFO: Selected control points are 33 129 101 53 114 102 56 92 103 52 80 84 33 75 75 INFO: Distances between consecutive points are 25 22 23 22 INFO: Selected control points in test subject's space are 24 58 22 32 52 23 33 43 24 32 38 18 24 36 15 INFO: Distances between consecutive points in test subject's space are 10 9 8 9 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 81 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0522708 INFO: Points where local peeks in curvature occur are 52 118 100 (curv = 0.0976288) 53 100 104 (curv = 0.0762681) 54 97 103 (curv = 0.0775172) 53 83 93 (curv = 0.068704) 50 80 86 (curv = 0.0639931) INFO: Intermediate dominant points are 35 128 94 52 118 100 54 97 103 53 83 93 32 90 69 INFO: Final dominant points are 35 128 94 52 118 100 54 97 103 53 83 93 32 90 69 WARN: Defaulting to equidistant control points INFO: Selected control points are 35 128 94 53 115 100 54 95 103 49 80 84 32 90 69 INFO: Distances between consecutive points are 23 20 25 25 INFO: Selected control points in test subject's space are 24 57 19 32 52 22 32 44 24 31 38 18 24 41 12 INFO: Distances between consecutive points in test subject's space are 10 8 9 10 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 87 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0528474 INFO: Points where local peeks in curvature occur are 52 117 101 (curv = 0.104998) 57 93 103 (curv = 0.0841141) 53 82 95 (curv = 0.0849468) 47 82 76 (curv = 0.0588867) INFO: Intermediate dominant points are 31 128 99 52 117 101 57 93 103 53 82 95 34 79 74 INFO: Final dominant points are 31 128 99 52 117 101 57 93 103 53 82 95 34 79 74 WARN: Defaulting to equidistant control points INFO: Selected control points are 31 128 99 53 116 101 57 93 103 51 81 86 34 79 74 INFO: Distances between consecutive points are 25 23 22 21 INFO: Selected control points in test subject's space are 23 57 21 32 53 23 33 44 24 31 38 19 25 37 14 INFO: Distances between consecutive points in test subject's space are 10 9 8 8 WARN: Could not find satisfactory control point fit - try 6 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 89 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0523631 INFO: Points where local peeks in curvature occur are 52 117 101 (curv = 0.112716) 57 95 104 (curv = 0.0676929) 55 87 102 (curv = 0.0762004) 53 81 94 (curv = 0.0786657) 52 80 85 (curv = 0.0559462) INFO: Intermediate dominant points are 31 131 99 52 117 101 57 95 104 53 81 94 34 78 74 INFO: Final dominant points are 31 131 99 52 117 101 57 95 104 53 81 94 34 78 74 WARN: Defaulting to equidistant control points INFO: Selected control points are 31 131 99 53 116 102 57 92 103 52 80 85 34 78 74 INFO: Distances between consecutive points are 27 24 22 21 INFO: Selected control points in test subject's space are 23 59 21 32 53 23 33 43 24 32 38 18 25 37 14 INFO: Distances between consecutive points in test subject's space are 11 10 8 8 WARN: Could not find satisfactory control point fit - try 7 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 89 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0509719 INFO: Points where local peeks in curvature occur are 52 117 101 (curv = 0.106241) 56 90 103 (curv = 0.0762605) 53 80 91 (curv = 0.051943) 53 80 85 (curv = 0.0567582) 49 80 78 (curv = 0.0531748) INFO: Intermediate dominant points are 33 129 101 52 117 101 56 90 103 49 80 78 33 76 75 INFO: Final dominant points are 33 129 101 52 117 101 56 90 103 49 80 78 33 76 75 WARN: Defaulting to equidistant control points INFO: Selected control points are 33 129 101 54 114 102 57 91 103 52 80 84 33 76 75 INFO: Distances between consecutive points are 26 23 23 21 INFO: Selected control points in test subject's space are 24 58 22 32 52 23 33 43 24 32 38 18 24 36 15 INFO: Distances between consecutive points in test subject's space are 10 9 8 9 WARN: Could not find satisfactory control point fit - try 8 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 87 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0508087 INFO: Points where local peeks in curvature occur are 53 115 102 (curv = 0.0873428) 57 95 104 (curv = 0.0760012) 55 85 101 (curv = 0.103893) 53 80 91 (curv = 0.0543973) 52 80 85 (curv = 0.0536442) INFO: Intermediate dominant points are 31 128 99 53 115 102 55 85 101 52 80 85 34 78 74 INFO: Final dominant points are 31 128 99 53 115 102 55 85 101 52 80 85 34 78 74 WARN: Defaulting to equidistant control points INFO: Selected control points are 31 128 99 52 116 101 57 94 104 53 80 87 34 78 74 INFO: Distances between consecutive points are 24 23 22 23 INFO: Selected control points in test subject's space are 23 57 21 31 53 22 33 44 25 32 38 19 25 37 14 INFO: Distances between consecutive points in test subject's space are 9 10 9 9 WARN: Could not find satisfactory control point fit - try 9 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 85 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0543301 INFO: Points where local peeks in curvature occur are 51 117 101 (curv = 0.0925797) 56 96 104 (curv = 0.0835785) 55 88 102 (curv = 0.0685132) 52 82 95 (curv = 0.0938857) INFO: Intermediate dominant points are 34 128 101 51 117 101 56 96 104 52 82 95 34 78 75 INFO: Final dominant points are 34 128 101 51 117 101 56 96 104 52 82 95 34 78 75 WARN: Defaulting to equidistant control points INFO: Selected control points are 34 128 101 52 115 102 56 93 103 50 82 85 34 78 75 INFO: Distances between consecutive points are 22 22 22 19 INFO: Selected control points in test subject's space are 24 58 22 31 53 23 33 44 24 31 39 18 25 37 14 INFO: Distances between consecutive points in test subject's space are 9 9 8 7 WARN: Could not find satisfactory control point fit - try 10 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 87 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0511504 INFO: Points where local peeks in curvature occur are 53 115 102 (curv = 0.0883091) 57 95 104 (curv = 0.0762743) 55 85 101 (curv = 0.077328) 52 80 83 (curv = 0.0726445) INFO: Intermediate dominant points are 31 128 99 53 115 102 55 85 101 52 80 83 34 78 74 INFO: Final dominant points are 31 128 99 53 115 102 55 85 101 52 80 83 34 78 74 WARN: Defaulting to equidistant control points INFO: Selected control points are 31 128 99 52 116 101 57 94 104 52 80 86 34 78 74 INFO: Distances between consecutive points are 24 23 23 22 INFO: Selected control points in test subject's space are 23 57 21 31 53 22 33 44 25 32 38 19 25 37 14 INFO: Distances between consecutive points in test subject's space are 9 10 9 9 WARN: Could not find satisfactory control point fit - try 11 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 84 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0522221 INFO: Points where local peeks in curvature occur are 51 118 101 (curv = 0.08957) 53 106 104 (curv = 0.0533716) 56 95 104 (curv = 0.0627361) 56 91 103 (curv = 0.0658541) 54 82 96 (curv = 0.0734739) 49 81 79 (curv = 0.054201) INFO: Intermediate dominant points are 33 129 101 51 118 101 54 82 96 49 81 79 34 78 74 INFO: Final dominant points are 33 129 101 51 118 101 54 82 96 49 81 79 34 78 74 INFO: Selected control points are 33 129 101 51 117 102 55 83 99 49 82 77 34 78 74 INFO: Distances between consecutive points are 22 34 23 16 INFO: Selected control points in test subject's space are 24 58 22 31 53 23 33 40 23 31 39 15 25 37 14 INFO: Distances between consecutive points in test subject's space are 9 13 8 6 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.slft_PP_avg33_mni_bbr_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.slft_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 13.19 sec. dmri_train done #------------------------------------- trac-preproc finished without error at Fri Aug 9 12:13:02 BST 2013