Hello FreeSurfer experts,

I previously emailed regarding processing longitudinal data in v6.0 using bases with manual edits that had been completed in v5.3. I went ahead and ran recon-all -all on the base of a subject (originally generated in v5.3) in v6.0, but it looks like the header of the recon-all.log still indicates v5.3. Looking at the /stats output, all files indicate v6.0. Below is the head of the log from running recon-all -all on this subject. Is this what you would expect if you ran recon-all -all on a subject_base in v6.0 that was generated in v5.3? If so, is this okay?

Recon-all log:

setenv SUBJECTS_DIR /study1/nccam3/data/mri/freesurfer_v6/subjects

FREESURFER_HOME /apps/x86_64_sci7/freesurfer-latest

Actual FREESURFER_HOME /apps/freesurfer-5.3.0/x86_64_sci6

build-stamp.txt: freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0

Linux c139.keck.waisman.wisc.edu 3.10.0-514.6.1.el7.x86_64 #1 SMP Tue Jan 17 11:12:41 CST 2017 x86_64 x86_64 x86_64 GNU/Linux

Thank you!

Kaley Ellis

Associate Research Specialist

Center for Healthy Minds

Waisman Center for Brain Imaging and Behavior

University of Wisconsin-Madison