In fact, couldn't I stop after calabel if all I want is the aseg.mgz?
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Josh


On Thu, Mar 28, 2013 at 11:18 AM, Joshua Lee <jkilee@ucdavis.edu> wrote:
Hi All,

Am I right in reading the dev table that if I just want the aseg.mgz, (not the stats output), I only need to run auto-recon1 and auto-recon2?

I need to run 250+ brains just to get the aseg volume, so if I can shave off 4-10 hours off each that would be huge.