On 10 January 2018 at 00:07, Douglas N Greve <greve@nmr.mgh.harvard.edu> wrote:

does this file exist and do you have read permissions?

/home/gsalvado/Projects/Amyloid_Staging/Data/FreeSurfer/Stage0-stage1NoSex.intercept.mtx

On 01/09/2018 09:34 AM, Gemma Salvadó Blasco wrote:
> Hello Freesurfer developers,
> I'm make a statistical analysis between two groups. To do this, I
> followed the instructions of the Fs tutorial
> (https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/GroupAnalysis)
> but I'm having a problem at the last step of the process (mri_glmfit).
> I've checked that all the folders have the same number of folders and
> documents. Moreover, I've also checked, visually, all the thickness
> images but there is no problem there. However, when I run mri_glmfit
> command in the console appears:
>
> Loading gamma0 file
> MatrixRead( ) - file open failed
>
> No such file or directory
> ERROR: loading gamma0
>
> FreeSurfer
> version:freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c
> OS: ubuntu 16.04LTS
>
> I attach mri_glmfit.log
>
> Thank you very much in advance,
>
> Gemma
>
>
> --
> *Gemma Salvadó Blasco
> *Neuroimage PhD Student
> *BarcelonaBeta**Brain Research Center (BBRC)
> *gsalvado@barcelonabeta.org <mailto:enebot@fpmaragall.org>
> T. (+34) 902 33 15 33
> <https://www.google.com/search?client=ubuntu&channel=fs&q=fundacio+pasqual+maragall&ie=utf-8&oe=utf-8#>
> C/ Wellington, 30
> <https://maps.google.com/?q=C/+Wellington,+30+08005+Barcelona&entry=gmail&source=g>
> 08005 Barcelona
> <https://maps.google.com/?q=C/+Wellington,+30+08005+Barcelona&entry=gmail&source=g>
> www.barcelonabeta.org <http://www.barcelonabeta.org/>
> www.fpmaragall.org <http://www.fpmaragall.org/>/
> /
>
>
> ------------------------------------------------------------------------
>
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> _Gràcies per estalviar paper. /Gracias por ahorrar papel. /Thanks for
> saving paper.
>
>
>
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--
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
www.nmr.mgh.harvard.edu/facility/filedrop/index.html
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Gemma Salvadó Blasco
Neuroimage PhD Student
BarcelonaBeta Brain Research Center (BBRC)
gsalvado@barcelonabeta.org
T. (+34) 902 33 15 33

C/ Wellington, 30
08005 Barcelona
www.barcelonabeta.org
www.fpmaragall.org

Aquest missatge i els seus annexos poden contenir informació confidencial i exclusiva per al destinatari. El seu contingut no constitueix un compromís per part de l'emissor. Si rep aquest missatge per error, si us plau elimini’l sense revisar-lo ni reenviar-lo i notifiqui-ho al remitent. Gràcies per la seva col·laboració. Este mensaje y sus anexos pueden contener información confidencial y exclusiva para el destinatario. Su contenido no constituye un compromiso por parte del emisor. Si recibe este mensaje por error, por favor elimínelo sin revisarlo ni reenviarlo y notifíquelo al remitente. Gracias por su colaboración. This message and attachments may contain confidential and exclusive information intended only for the individual named. The content of this message does not imply any commitment by the sender. If you have received this e-mail by mistake, please delete it before reading or distributing and notify the sender. Thank you for your cooperation.
Gràcies per estalviar paper. Gracias por ahorrar papel. Thanks for saving paper.