Gari,

Can you try the attached fixed files?  Both aparcstats2table and
asegstats2table were fixed.

To install:

cp stats2tab.tar $FREESURFER_HOME/bin
cd $FREESURFER_HOME/bin
tar xf stats2tab.tar

Thanks again,

Nick

On Mon, 2013-02-11 at 17:06 +0100, Garikoitz Lerma-Usabiaga wrote:
> Thanks Nick!!
> is it a solution to run 5.2 aparcstats2table (Snow Leopard) in another
> machine, accessing the data from a network drive?
>
>
> or is it a solution to run the aparcstats2table provided in 5.1 in the
> same machine, but accessing the data created by the 5.2 version?
>
>
> many thanks again for your help,
> Gari
>
>
> On Mon, Feb 11, 2013 at 5:02 PM, Nick Schmansky
> <nicks@nmr.mgh.harvard.edu> wrote:
>         Gari,
>
>         A little googling tells me that the 'with' statement in python
>         was
>         introduced in python v2.5 in 2008, so unfortunately i think
>         you'll have to
>         update your python version, unless aparcstats2table can be
>         rewritten to
>         not use that statement.
>
>         Nick
>
>
>         > Hi Nick!
>         > this is the version:
>         > Centos 4 32b or 64b (x86_64)
>         > (Linux cajal 2.6.18-164.15.1.el5 #1 SMP Wed Mar 17 11:30:06
>         EDT 2010
>         > x86_64
>         > x86_64 x86_64 GNU/Linux)
>         >
>         >
>         > and the python version is:
>         > Python 2.4.3 (#1, Feb 22 2012, 16:05:45)
>         > [GCC 4.1.2 20080704 (Red Hat 4.1.2-52)] on linux2
>         > (python --version is not working)
>         >
>         > thanks!
>         > Gari
>         >
>         >
>         >
>         >
>         > On Mon, Feb 11, 2013 at 4:50 PM, Nick Schmansky
>         > <nicks@nmr.mgh.harvard.edu>wrote:
>         >
>         >> Gari,
>         >>
>         >> What OS are you running?  is this the Centos 4 32b or 64b
>         (x86_64)?
>         >>
>         >> can you tell me your python version?  this way:
>         >>
>         >> python --version
>         >>
>         >> Nick
>         >>
>         >>
>         >> > Hi fs experts,
>         >> > I have this error every time I try tu run
>         aparcstats2table :
>         >> >
>         >> >   File
>         "/home/glerma/fs/52/freesurfer/bin/aparcstats2table", line 221
>         >> >     with open(o.qdec, 'rb') as f:
>         >> >             ^
>         >> > SyntaxError: invalid syntax
>         >> >
>         >> >
>         >> >
>         >> > it appears each time I run aparcstats2table, even when I
>         write:
>         >> > aparcstats2table --help
>         >> >
>         >> >
>         >> > I have changed the environment variables in order to run
>         the 5.1
>         >> version,
>         >> > and it works as always.
>         >> >
>         >> >
>         >> > What else should I check?
>         >> > thanks!
>         >> > Gari
>         >> > _______________________________________________
>         >> > Freesurfer mailing list
>         >> > Freesurfer@nmr.mgh.harvard.edu
>         >> >
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>         >>
>         >>
>         >>
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