Hi Bruce,

Thanks for your comment!

I used mri_annotation2label to existed lh.aparc.annot file in label folder and got the labels. but the labels' text file contain 0 in fifth column.

I need to create atlas from my own data including surface parcellation. how can I do that? I found commands;

mris_ca_train and mris_ca_label,

how can I make the annotation files from my own data?

BR,

Atena

On Wed, Mar 6, 2019 at 1:10 AM Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote:

Hi Atena

yes, mri_annotation2label should work, although it really depends on what
you want to do next

cheers
Bruce
On Wed, 6 Mar 2019, Atena Rezaei wrote:

>
> External Email - Use Caution
>
> Hello,
>
> I am trying to extract the cortical parcellation(atlas) file from freesurfer with all the labels. I found
> the lh.aparc.annot file in label folder. Should I use mri_annotation2label to create labels? or how can I
> extract the whole file?
> Thanks for ur help!
>
> BR,
> Atena
>
>
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