-------- freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 -------- Setting up environment for FreeSurfer/FS-FAST (and FSL) FREESURFER_HOME /usr/local/freesurfer51 FSFAST_HOME /usr/local/freesurfer51/fsfast FSF_OUTPUT_FORMAT nii.gz SUBJECTS_DIR /usr/local/freesurfer51/subjects MNI_DIR /usr/local/freesurfer51/mni FSL_DIR /usr/local/fsl ---------------------------------------------------------- func2roi-sess logfile is /home/vmrao17/freesurfer/sessions/heading/log/func2roi-sess.log ---------------------------------------------------------- ----------------------------------------------------- Session: LMV2012_N01_heading 1/1 Thu Mar 8 11:35:57 EST 2012 Thu Mar 8 11:35:57 EST 2012 --------------------------------------------------- /home/vmrao17/freesurfer/sessions/heading/LMV2012_N01_heading mri_vol2roi --srcvol bold/glheadgen_analysis/h --roiavg bold/glheadgen_analysis/rhmed_singlevsdouble_1/h --srcreg bold/register.dat --label /home/vmrao17/freesurfer/subjects/LMV2012_N01/label/rhmed_singlevsdouble_1.label --mskvol bold/glheadgen_analysis//allvsoff/sig --mskthresh 1.50 --msktail pos --mskframe 0 --finalmskvol bold/glheadgen_analysis/rhmed_singlevsdouble_1/mask --roiavgtxt bold/glheadgen_analysis/rhmed_singlevsdouble_1/h.txt --------------------------------------------------- -------------------------------------------------------- /home/vmrao17/freesurfer/sessions/heading/LMV2012_N01_heading mri_vol2roi --srcvol bold/glheadgen_analysis/h --roiavg bold/glheadgen_analysis/rhmed_singlevsdouble_1/h --srcreg bold/register.dat --label /home/vmrao17/freesurfer/subjects/LMV2012_N01/label/rhmed_singlevsdouble_1.label --mskvol bold/glheadgen_analysis//allvsoff/sig --mskthresh 1.50 --msktail pos --mskframe 0 --finalmskvol bold/glheadgen_analysis/rhmed_singlevsdouble_1/mask --roiavgtxt bold/glheadgen_analysis/rhmed_singlevsdouble_1/h.txt version $Id: mri_vol2roi.c,v 1.32 2011/03/02 00:04:25 nicks Exp $ -------------------------------------------------------- roifile = bold/glheadgen_analysis/rhmed_singlevsdouble_1/h roitxtfile = bold/glheadgen_analysis/rhmed_singlevsdouble_1/h.txt oldtxtstyle = 0 srcvol = bold/glheadgen_analysis/h.nii.gz srcfmt = bvolume srcreg = bold/register.dat srcregold = 0 srcwarp unspecified label file = /home/vmrao17/freesurfer/subjects/LMV2012_N01/label/rhmed_singlevsdouble_1.label labelreg unspecified label fill thresh = 1e-07 mskvol = bold/glheadgen_analysis//allvsoff/sig.nii.gz mskfmt unspecified msk volume same as source msk tail = pos msk threshold = 1.500000 msk invert = 0 msk frame = 0 Loading volume bold/glheadgen_analysis/h.nii.gz ...done srcreg Dsrc ------------- 0.999 -0.001 -0.050 -0.291; 0.049 -0.069 0.996 -2.088; 0.004 0.998 0.069 -0.450; 0.000 0.000 0.000 1.000; ---------------------------------- ras2vox src (tkreg) Qsrc ------------- -0.320 0.000 0.000 32.000; -0.000 -0.000 -0.320 32.000; -0.000 0.208 0.000 16.500; 0.000 0.000 0.000 1.000; ---------------------------------- Reading bold/glheadgen_analysis//allvsoff/sig.nii.gz NOT INVERTING INFO: Source volume detected as selxavg format INFO: Adjusting Frame Power Lxyz2Scrs: -0.320 0.000 0.016 32.093; -0.001 -0.319 -0.022 32.144; 0.010 -0.014 0.208 16.065; 0.000 0.000 0.000 1.000; INFO: label2mask_linear: there were 223 label hits voxsize = 46.875, rszthresh = 1e-07, thresh = 4.6875e-06 INFO: label2mask_linear: there were 12 hits in final mask label2mask_linear: done Lxyz2Scrs: -0.320 0.000 0.016 32.093; -0.001 -0.319 -0.022 32.144; 0.010 -0.014 0.208 16.065; 0.000 0.000 0.000 1.000; INFO: label2mask_linear: there were 604 label hits voxsize = 46.875, rszthresh = 1e-07, thresh = 4.6875e-06 INFO: label2mask_linear: there were 51 hits in final mask label2mask_linear: done Averging over ROI INFO: vol2maskavg: nhits = 12 Done averging over ROI (nhits = 12) INFO: Readjusting Frame Power --------------------------------------------------- /home/vmrao17/freesurfer/sessions/heading/LMV2012_N01_heading mri_vol2roi --srcvol bold/glheadgen_analysis/h-offset --roiavg bold/glheadgen_analysis/rhmed_singlevsdouble_1/h-offset --srcreg bold/register.dat --label /home/vmrao17/freesurfer/subjects/LMV2012_N01/label/rhmed_singlevsdouble_1.label --mskvol bold/glheadgen_analysis//allvsoff/sig --mskthresh 1.50 --msktail pos --mskframe 0 --finalmskvol bold/glheadgen_analysis/rhmed_singlevsdouble_1/mask --roiavgtxt bold/glheadgen_analysis/rhmed_singlevsdouble_1/h-offset.txt --------------------------------------------------- -------------------------------------------------------- /home/vmrao17/freesurfer/sessions/heading/LMV2012_N01_heading mri_vol2roi --srcvol bold/glheadgen_analysis/h-offset --roiavg bold/glheadgen_analysis/rhmed_singlevsdouble_1/h-offset --srcreg bold/register.dat --label /home/vmrao17/freesurfer/subjects/LMV2012_N01/label/rhmed_singlevsdouble_1.label --mskvol bold/glheadgen_analysis//allvsoff/sig --mskthresh 1.50 --msktail pos --mskframe 0 --finalmskvol bold/glheadgen_analysis/rhmed_singlevsdouble_1/mask --roiavgtxt bold/glheadgen_analysis/rhmed_singlevsdouble_1/h-offset.txt version $Id: mri_vol2roi.c,v 1.32 2011/03/02 00:04:25 nicks Exp $ -------------------------------------------------------- roifile = bold/glheadgen_analysis/rhmed_singlevsdouble_1/h-offset roitxtfile = bold/glheadgen_analysis/rhmed_singlevsdouble_1/h-offset.txt oldtxtstyle = 0 srcvol = bold/glheadgen_analysis/h-offset.nii.gz srcfmt = bvolume srcreg = bold/register.dat srcregold = 0 srcwarp unspecified label file = /home/vmrao17/freesurfer/subjects/LMV2012_N01/label/rhmed_singlevsdouble_1.label labelreg unspecified label fill thresh = 1e-07 mskvol = bold/glheadgen_analysis//allvsoff/sig.nii.gz mskfmt unspecified msk volume same as source msk tail = pos msk threshold = 1.500000 msk invert = 0 msk frame = 0 Loading volume bold/glheadgen_analysis/h-offset.nii.gz ...done srcreg Dsrc ------------- 0.999 -0.001 -0.050 -0.291; 0.049 -0.069 0.996 -2.088; 0.004 0.998 0.069 -0.450; 0.000 0.000 0.000 1.000; ---------------------------------- ras2vox src (tkreg) Qsrc ------------- -0.320 0.000 0.000 32.000; -0.000 -0.000 -0.320 32.000; -0.000 0.208 0.000 16.500; 0.000 0.000 0.000 1.000; ---------------------------------- Reading bold/glheadgen_analysis//allvsoff/sig.nii.gz NOT INVERTING Lxyz2Scrs: -0.320 0.000 0.016 32.093; -0.001 -0.319 -0.022 32.144; 0.010 -0.014 0.208 16.065; 0.000 0.000 0.000 1.000; INFO: label2mask_linear: there were 223 label hits voxsize = 46.875, rszthresh = 1e-07, thresh = 4.6875e-06 INFO: label2mask_linear: there were 12 hits in final mask label2mask_linear: done Lxyz2Scrs: -0.320 0.000 0.016 32.093; -0.001 -0.319 -0.022 32.144; 0.010 -0.014 0.208 16.065; 0.000 0.000 0.000 1.000; INFO: label2mask_linear: there were 604 label hits voxsize = 46.875, rszthresh = 1e-07, thresh = 4.6875e-06 INFO: label2mask_linear: there were 51 hits in final mask label2mask_linear: done Averging over ROI INFO: vol2maskavg: nhits = 12 Done averging over ROI (nhits = 12) RunList: 021 022 023 024 025 026 027 028 029 ------------------------------------------- /home/vmrao17/freesurfer/sessions/heading/LMV2012_N01_heading mri_vol2roi --srcvol bold/021/ --roiavg bold/glheadgen_analysis/rhmed_singlevsdouble_1/-021 --srcreg bold/register.dat --label /home/vmrao17/freesurfer/subjects/LMV2012_N01/label/rhmed_singlevsdouble_1.label --mskvol bold/glheadgen_analysis//allvsoff/sig --mskthresh 1.50 --msktail pos --mskframe 0 --finalmskvol bold/glheadgen_analysis/rhmed_singlevsdouble_1/mask --roiavgtxt bold/glheadgen_analysis/rhmed_singlevsdouble_1/-021.txt ------------------------------------------- corRead(): can't open file bold/021/COR-.info -------------------------------------------------------- /home/vmrao17/freesurfer/sessions/heading/LMV2012_N01_heading mri_vol2roi --srcvol bold/021/ --roiavg bold/glheadgen_analysis/rhmed_singlevsdouble_1/-021 --srcreg bold/register.dat --label /home/vmrao17/freesurfer/subjects/LMV2012_N01/label/rhmed_singlevsdouble_1.label --mskvol bold/glheadgen_analysis//allvsoff/sig --mskthresh 1.50 --msktail pos --mskframe 0 --finalmskvol bold/glheadgen_analysis/rhmed_singlevsdouble_1/mask --roiavgtxt bold/glheadgen_analysis/rhmed_singlevsdouble_1/-021.txt version $Id: mri_vol2roi.c,v 1.32 2011/03/02 00:04:25 nicks Exp $ -------------------------------------------------------- roifile = bold/glheadgen_analysis/rhmed_singlevsdouble_1/-021 roitxtfile = bold/glheadgen_analysis/rhmed_singlevsdouble_1/-021.txt oldtxtstyle = 0 srcvol = bold/021/ srcfmt = bvolume srcreg = bold/register.dat srcregold = 0 srcwarp unspecified label file = /home/vmrao17/freesurfer/subjects/LMV2012_N01/label/rhmed_singlevsdouble_1.label labelreg unspecified label fill thresh = 1e-07 mskvol = bold/glheadgen_analysis//allvsoff/sig.nii.gz mskfmt unspecified msk volume same as source msk tail = pos msk threshold = 1.500000 msk invert = 0 msk frame = 0 Loading volume bold/021/ ... LMV2012_N01_heading 51 12 123.737160 1.535988 1572.000000 0.050000 -0.000000 21 1 0.734151 3.595402 4.435675 5.482294 0.544176 -0.166144 2.951724 2.114511 3.178010 2.814232 0.944738 0.466052 8.508595 7.646451 6.767788 9.197896 8.802674 11.339759 7.822568 4.040024 8.018742