It is whatever volume you gave as input to recon-all. If you tell us which statistics you want to regenerate for another volume we can tell you know what commands to run.

cheers

Bruce

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of ERNEST KISSI
Sent: Wednesday, January 24, 2024 9:05 AM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] Freesurfer Intensity representation

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Hi,

Please I made an initial enquiry about using freesurfer for MPF maps. The feedback was that I register the MPF maps on their corresponding T1 images using multimodal registration. I used FSL to do the multimodal registration and then use recon-all in freesurfer.

Now I want to know what the intensity and the volume of the output in the aseg file represent. Is it the intensity of the MPF or the TI and MPF?