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Hi Eugenio, 

I'd like to report a Matlab runtime Java error when running the Hippocampal subfield on FS6.0-dev (Jun 27, 2018) after a successful completion of `recon-all`. Matlab 2014b runtime has been successfully expanded at /MCRv84.

The error I've encountered follows. Any suggestions on how I can overcome this error? 

Thanks for your pointers!

Best, 

Sean Ma
University of Michigan

==================================

[tehsheng@b-fmri FS6results]$ segmentHA_T1.sh b30002_02712
#--------------------------------------------
#@# Hippocampal Subfields processing (T1) left Mon Jul  2 15:16:41 EDT 2018
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/opt/freesurfer6/MCRv84//runtime/glnxa64:/opt/freesurfer6/MCRv84//bin/glnxa64:/opt/freesurfer6/MCRv84//sys/os/glnxa64::/opt/freesurfer6/MCRv84//sys/opengl/lib/glnxa64:
Error using checkRequiredMCRProducts (line 25)
Java exception occurred:
java.lang.NullPointerException
        at com.mathworks.install.InstalledProductFactory$1.execute(InstalledProductFactory.java:56)
        at com.mathworks.install.InstalledProductFactory$1.execute(InstalledProductFactory.java:49)
        at com.mathworks.install.InstalledProductFactory$InstallerWorkSpace.executeTask(InstalledProductFactory.java:193)
        at com.mathworks.install.InstalledProductFactory$InstallerWorkSpace.access$200(InstalledProductFactory.java:108)
        at com.mathworks.install.InstalledProductFactory.getInstalledProducts(InstalledProductFactory.java:67)

Error in deployrc (line 9)

Error in matlabrc (line 238)


@#@FSTIME  2018:07:02:15:16:41 run_segmentSubjectT1_autoEstimateAlveusML.sh N 13 e 32.59 S 0.39 U 5.00 P 16% M 205368 F 82 R 43627 W 0 c 54 w 1963 I 24008 O 82888 L 0.00 0.07 0.89
@#@FSLOADPOST 2018:07:02:15:17:13 run_segmentSubjectT1_autoEstimateAlveusML.sh N 13 0.15 0.11 0.87
Linux b-fmri.edu 2.6.32-696.28.1.el6.x86_64 #1 SMP Thu Apr 26 04:27:41 EDT 2018 x86_64 x86_64 x86_64 GNU/Linux

T1 hippocampal subfields exited with ERRORS at Mon Jul  2 15:17:13 EDT 2018

For more details, see the log file /mnt/blab/Sean_Working/FS6results/b30002_02712/scripts/hippocampal-subfields-T1.log