Message: 7
Date: Sun, 12 Mar 2017 19:00:21 -0400
From: Douglas Greve <greve@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] Faulty alignment to standard surface
To: freesurfer@nmr.mgh.harvard.edu
Message-ID: <7ab364ef-539f-fd65-4346-db68d915ca05@nmr.mgh.harvard.edu>
Content-Type: text/plain; charset="windows-1252"

not sure what you mean. Can you send a pic? Is the surface placement on
the individual correct (ie, are the white and pial surfaces properly
placed on the T1)?

On 3/10/17 11:19 AM, Daan Wesselink wrote:
> Dear experts,
>
> I've run the standard recon-all pipeline on a subject, for whom the
> log does not report any errors and the white and pial surface follow
> the structural nicely. However, the coregistration to the standard
> surface has gone wrong: it seems like the central sulcus (e.g. labels
> BA1, BA3a) is placed on top of the postcentral sulcus.
>
> Does someone know how to fix this problem and/or better identify the
> step where it went wrong?
>
> Many thanks,
>
> Daan Wesselink
>
>

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