From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Zeng, Victor (BIDMC - Keshavan - Psychiatry) <vzeng@bidmc.harvard.edu>
Sent: Friday, February 17, 2023 1:22 PM
To: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] error with synthsr

External Email - Use Caution

Hi developers,

Using freesurfer-linux-centos7_x86_64-dev-20230216-9bc2be6, I receive an error following mri_synthsr.

It says :

get_data() is deprecated in favor of get_fdata(), which has a more predictable return type. To obtain get_data() behavior going forward, use numpy.asanyarray(img.dataobj).

* deprecated from version: 3.0

* Raises <class 'nibabel.deprecator.ExpiredDeprecationError'> as of version: 5.0

resuming program execution

Since this seems to be a python problem, I am using python 3.7.7 and python 3.9.12, and neither seem to work.

Thanks,

Victor Zeng

Beth Israel Deaconess Medical Center

Keshavan Lab

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