It does 1-3. It also labels cerebellum which you could then use to perform #4

On 6/23/2019 7:03 AM, ping cao wrote:

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Dear expert,

Thank you for reading!

I want to do these four pre-processing steps: 
1. Re-sampling each MR image to 256*256*256; 
2. Using the N3 algorithm for intensity inhomogeneity correction;
3. Skull stripping;
4. Removing the cerebellum.
Does " recon-all"  do all the above 4 steps automatically? If so, which file is just finished with these four steps? If not, how can I do these steps?

Your help is greatly appreciated.  

Best,
ping

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