Look in the subject/scripts/recon-all.cmd file of one of your subjects.
You will find five mri_surf2volseg commands
Use the 2nd one (the one that creates aparc+aseg.mgz) as your template and modify it to take your BA annotation and output a "BA+aseg.mgz"
Use the last one ( the one that creates wmparc.mgz) as your template to create your new wmBA.mgz file, modifying it as needed.
You will need to create a new LUT, but let's do that when you get there

On 2/9/2021 10:26 AM, Vinny K wrote:

External Email - Use Caution

I am using freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551
On Tue, Feb 9, 2021 at 9:55 AM Douglas N. Greve <dgreve@mgh.harvard.edu> wrote:
which version of FS are you using?

On 2/5/2021 10:02 PM, Vinny K wrote:
External Email - Use Caution

Hello,

I'd like to obtain white matter parcellations of the Brodmann areas. I am not certain that the generated wmparc file from recon-all has this type of parcellation. I was able to convert Brodmann area label files to mgz format using mris_label2annot and mri_aparc2aseg commands. How can I obtain white matter parcellation of the individual Brodmann area volumes?

Thanks,

Vinny
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer