Hi,

Just a follow-up about the message I posted. Problem is solved. I just moved freesurfer/ outside of the Applications folder (from /Users/me/Applications/freesurfer to /Users/me/freesurfer ).

So now I can work with my macbook on subjects previously processed with another system. Probably an issue with mac os (10.11.6 ?) and copy pasting files in a subdirectory of the Applications folder… 

Thanks,

Damien

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 Sat, 15 Apr 2017 06:22:31 -0700
Hi,

I ran recon-all on a server where Ubuntu is running.
Recently I installed separately freesurfer on a macbook, it is working (e.g. 
tkmedit bert), I moved my processed subjects to freesurfer/subjects on the 
macbook but I can not work with them. I have the below error. I changed the 
permission to 777, it is still not working. Now what is really strange is that, 
using the finder I do not see the files in freesurfer/subjects but by doing ls 
-l in a terminal, I can see them…

Please note that SUBJECT_DIR is defined.

Any idea is welcome.

Thank you and best,


Damiens-MacBook-Pro-2:subjects dmarie2$ tkmedit 
hires_ct_pp1_N4_bet_MP2RAGEcorr/ brainmask.mgz -aux T1.mgz
ERROR: cannot find subject hires_ct_pp1_N4_bet_MP2RAGEcorr/ in 
/Applications/freesurfer/subjects or it is not readable by you


Damien 
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