Hi Freesurfer gurus:

I recently installed 6.0.0 on MacOS 10.12 and recon-all is exiting with an error in mris_smooth. It looks like a library issue. 

A prior post had the same issue and indicated uninstalling the whole distribution and re-installing 6.0.0 fresh (as opposed to installing over 5.3). I receive the same error however (pasted below).

Does anyone have any thoughts?

Thanks!
Jared

#@# Smooth1 rh Thu Feb 16 16:47:23 EST 2017
/Users/jared/Desktop/fMRITest/test/scripts
\n mris_smooth -nw -seed 1234 ../surf/rh.orig.nofix ../surf/rh.smoothwm.nofix \n
Waiting for PID 11130 of (11130 11133) to complete...
/Applications/freesurfer/bin/reconbatchjobs: line 81: 11130 Abort trap: 6           exec $JOB >> $LOG 2>&1
Waiting for PID 11133 of (11130 11133) to complete...
/Applications/freesurfer/bin/reconbatchjobs: line 81: 11133 Abort trap: 6           exec $JOB >> $LOG 2>&1

 mris_smooth -nw -seed 1234 ../surf/lh.orig.nofix ../surf/lh.smoothwm.nofix

setting seed for random number generator to 1234
dyld: lazy symbol binding failed: Symbol not found: ___emutls_get_address
  Referenced from: /Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ___emutls_get_address
  Referenced from: /Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib
  Expected in: /usr/lib/libSystem.B.dylib


 mris_smooth -nw -seed 1234 ../surf/rh.orig.nofix ../surf/rh.smoothwm.nofix

setting seed for random number generator to 1234
dyld: lazy symbol binding failed: Symbol not found: ___emutls_get_address
  Referenced from: /Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ___emutls_get_address
  Referenced from: /Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib
  Expected in: /usr/lib/libSystem.B.dylib

PIDs (11130 11133) completed and logs appended.
Darwin Jareds-iMac.local 16.4.0 Darwin Kernel Version 16.4.0: Thu Dec 22 22:53:21 PST 2016; root:xnu-3789.41.3~3/RELEASE_X86_64 x86_64

recon-all -s test exited with ERRORS at Thu Feb 16 16:47:23 EST 2017



Jared M. Saletin, PhD

Assistant Professor of Psychiatry and Human Behavior
Alpert Medical School of Brown University

E.P. Bradley Sleep Research Lab
300 Duncan Drive
Providence, RI 02906

Email: jared_saletin@brown.edu
Phone: 401-421-9440 
Fax: 401-453-3578