Dear Stefano,

 

Sorry for the delayed answer and thank you for your advice. As you mentionned, it was probably a template registration issue because when I updated my FS version to the 7.2, the cropping of 3D T1 and T2 FLAIR images stopped and the segmentation performed really well.

 

Another concern I have is about the segmentation of the white matter hyperintensities (in the T2 FLAIR). It seems that SAMSEG does not succeed in finding the « small » lesions  located in the most superior part of the brain. Do you have any feedback on that ?

 

Best,

 

Achille