Hi,

 

I am using mri_convert to change the orientation of an image in its native space from LPS  to PSR. 

Ex. Mri_convert –out_orientation PSR  input_file output_file

Sometime when I do this, I lose the last coronal slice(s) of the occipital lobe when the image is converted to PSR.  Is there some way to ensure that when I change the orientation, I get the whole brain back?

 

Thanks,

Melissa