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Dr. Iglesias,

I am still receiving the killed message. I am also stumped by how the platform was working for me not too long ago. I was able to run ~160 sequences recently without issue.

Is there anything else I can try?

Best,
Ian Johnson, B.A.
Clinical Research Associate
Division of Neurocritical Care & Emergency Neurology
Yale School of Medicine
E: ian.p.johnson@yale.edu
From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Johnson, Ian <ian.p.johnson@yale.edu>
Sent: Monday, October 7, 2024 5:20 PM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] mri_WMHsynthseg error: Killed 9
 

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Dr. Iglesias,

Let me give it a try using that addition and I'll let you know if it fails again.

Best,
Ian Johnson, B.A.
Clinical Research Associate
Division of Neurocritical Care & Emergency Neurology
Yale School of Medicine
E: ian.p.johnson@yale.edu
From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Iglesias Gonzalez, Juan E. <JIGLESIASGONZALEZ@mgh.harvard.edu>
Sent: Monday, October 7, 2024 5:08 PM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] mri_WMHsynthseg error: Killed 9
 

Dear Ian

That sounds like a RAM issue. Did you try using the crop option?

Cheers,

/Eugenio

 

--

Juan Eugenio Iglesias

http://www.jeiglesias.com

 

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Johnson, Ian <ian.p.johnson@yale.edu>
Date: Monday, October 7, 2024 at 11:41
To: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] mri_WMHsynthseg error: Killed 9

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Hello SynthSeg Experts,

 

I am having an issue when I run mri_WMHsynthseg. I have run the program many times before without any issues. I recently closed my terminal while updating my Mac and reopened it to run WMHsynthseg. 

 

I have seen from previous posts that the "killed" error is because of an issue with RAM, but I have not run into this error in the past. The error occurs while on the "Pushing data through the CNN" step. There is no error message, terminal just prints "killed: 9"

 

Best,

Ian J