Dear Zheng,

I believe you ran out of memory. How much RAM does your machine have? You need about 10GB to run this.

Cheers,

/Eugenio

Juan Eugenio Iglesias

Senior research fellow

CMIC (UCL), MGH (HMS) and CSAIL (MIT)

http://www.jeiglesias.com

From: <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of 郑凤莲 <zhengfenglian0105@163.com>
Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Date: Friday, 9 August 2019 at 01:19
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] Hippocampal subfields

External Email - Use Caution

Dear /Eugenio,

Here is the log files and all results for one subject as the attachments. I have run a lots of subjects and all result directories didn't include l(r)h.hippoSfLabels-T1.v10.mgz file.

Sincerely,

Zheng

At 2019-08-08 09:49:30, "Iglesias Gonzalez, Juan E." <JIGLESIASGONZALEZ@mgh.harvard.edu> wrote:

Dear Zheng,

Can you please send us the log files?

Kind regards,

/Eugenio

--

Juan Eugenio Iglesias

Senior research fellow

CMIC (UCL), MGH (HMS) and CSAIL (MIT)

http://www.jeiglesias.com

From: <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of 郑凤莲 <zhengfenglian0105@163.com>
Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Date: Wednesday, 7 August 2019 at 21:19
To: "freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] Hippocampal subfields

External Email - Use Caution

Hi exports,

I am using FS6.0 to segment hippocampus. I run "recon-all -s bert -hippocampal-subfields-T1" and it said "recon all bert finished without error". However, in mri directory, there is no l(r)h.hippoSfLabels-T1.v10.mgz file. And in tmp directory, there are two directories, "hippoSF_T1_v10_left" and "hippoSF_T1_v10_right". But in these two directories, the l(r)h.hippoSfLabels-T1.v10.mgz file is still not exsit. What's the matter? I need your help. Thanks very muxh in advance.

Sincerely,

Zheng