Hi Sarah

You can use read_annotation.m to load an annotation into matlab, which should give you the info you are after.

Cheers

Bruce

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of Sarah Lavelle
Sent: Sunday, March 5, 2023 12:09 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] List of vertices in defined region

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Hi there,

I want to get a list of all vertex numbers within a defined region. For example, to see what vertices are in the superior frontal lobe using the DKAtlas. 

Would you have any suggestions? I am currently using Matlab to analyse the cortical surface mesh so it would be great to have this list in a Matlab environment.

Thank you very much,

Sarah Lavelle