Hi Linn,

I have never done that, so I am not sure, but since it is likely affecting the surface, I think you need to do it in the base, to get good initial surfaces. You may have to do it again in the long stage.
Start with the base.

Best, Martin

On 02/10/2014 10:49 AM, Linn Christin Bonaventure Norbom wrote:

---------- Forwarded message ----------
From: Linn Christin Bonaventure Norbom <linnnorbom@gmail.com>
Date: Mon, Feb 10, 2014 at 4:06 PM
Subject: Edit hyperintense regions in aseg.mgz file in long or base?
To: Bruce Fischl <fischl@nmr.mgh.harvard.edu>

Hi everyone,

I am registering hyperintense lesions as "lh-lesion" or "rh-lesion" and I was wondering if it is better to do this as the base or the long stage. I see that the freesurfer wiki page says I can do it at both stages depending on the problem, but I was not sure if lesion registration counted as "incorrect labeling" or "correcting the volume of importaint structures".

Thank you in advance!

Regards Linn Norbom
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Martin Reuter, Ph.D.
Assistant in Neuroscience - Massachusetts General Hospital
Instructor in Neurology   - Harvard Medical School
MGH / HMS / MIT

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