Hi all,

For the sake of time, for one dataset we have that we want to extract hippocampal/amygdala/thalamus subfields from, we ran it without manually editing any portions of the brain. We're going to visually QC it, but do you anticipate any trouble with the accuracy of the segmentation considering we didn't remove any portions of the brainmask for dura/blood vessels and etc.

Obviously, if we detect that a blood vessel is running through the amgydala, we would remove that and rerun the subfield extraction.

Victor Zeng

Beth Israel Deaconess Medical Center

Keshavan Lab

ph: 617 754 1237

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