[Homer-users] ETG-100 data

[thuppert]

A while back I wrote conversion code to read the ISS BOXY text files into
HOMER. I have uploaded it onto a file drop where you can download it.
https://www.nmr.mgh.harvard.edu/facility/filedrop/showgroup/3108/1/world

There are two programs:

ISS2HOMER.m  -  The conversion wrapper program (Run this).
ReadBOXYfile.m- A matlab reader for the BOXY text file

DISCLAIMER:  I wrote these a while back and I am distributing these AS IS.
I.e. they probably work, but I'm not guaranteeing to be completely bug free
(esp. wrt matlab version issues).


Also-
A former grad student in the lab has also built a GUI for the ISS (reading
in the output of the BOXY files).  However, there is limited support for
this.
http://www.nmr.mgh.harvard.edu/DOT/resources/FDMDGUI/home.htm


Ted Huppert, M.Sc.

PhD Candidate
Harvard University:
Graduate Programs in Biophysics
Photon Migration Imaging lab
Massachusetts General Hospital
Tel: (617)726-9338

thuppert at nmr.mgh.harvard.edu









-----Original Message-----
From: pietro scatturin [mailto:p.scatturin at unipd.it]
Sent: Friday, August 25, 2006 6:04 AM
To: thuppert at nmr.mgh.harvard.edu
Subject: RE: [Homer-users] ETG-100 data


Dear Mr. Huppert,

  I' m a technician, working now on a ISS Imagent FD instrument .
Now I'm starting with the Homer package : is very
helpful, but I have some difficulties to read Iss intensity data (text
files):
(I' m able with C++, little with Matlab)  . I'm grateful if you can help me.
                                                                         Tha
nks
Pietro



P.S.
At this time, I'm analyzing ISS data Files  with
an EEG analysis software ( BRAINAMP Analyzer) via a my utility conversion,
but with some serious limitations, due to time
and Intensity scaling. If you are interested, i
can send you the source code (C++)






At 02:38 PM 6/7/2006, you wrote:
>If anyone has these types of conversion programs that they would like to
>share, we'd be happy to post them on the HOMER website.  If you email the
>program to myself with some sort of brief description, we'll put some sort
>of download page on the HOMER website.  I have conversion programs for the
>TechEn instruments, the ISS frequency domain, and a very simple one for
>Britton Chance's design.  I'll post these as soon as I can.
>
>Note, it might take a few weeks before I get to changing the website
because
>I am leaving for the Human Brain Mapping conference in just a few hours.
>... and if anyone is in Florence, IT for the conference, I'll be avaliable
>to answer any HOMER related questions or otherwise.  I am also giving a
oral
>presentation Tues 13th @17:45 in the Imaging I: EEG,MEG, and Optical
>section.  The talk is entitled: Quantitative estimation of cerebral
>hemodynamic changes through the multimodality fusion of BOLD and Diffuse
>Optical Tomography.
>
>
>Ted Huppert, M.Sc.
>
>PhD student-Harvard Univ.
>Dept of Biophysics
>Photon Migration Imaging lab
>Mass General Hospital/CNY
>
>Tele: (617)726-9338
>
>thuppert at nmr.mgh.harvard.edu
>
>
>
>
>
>
>
>
>
>
>-----Original Message-----
>From: homer-users-bounces at nmr.mgh.harvard.edu
>[mailto:homer-users-bounces at nmr.mgh.harvard.edu]On Behalf Of Mohinish
>Sent: Wednesday, June 07, 2006 5:13 AM
>To: homer-users at nmr.mgh.harvard.edu
>Subject: Re: [Homer-users] ETG-100 data
>
>
>Hi, I have a matlab script that does something of the sort; I can
>send it around, but it might need tweaking (specially for the probe
>layout)
>
>
>On 7 Jun 2006, at 2:37 AM, Anna Lane wrote:
>
> > Hello all,
> >
> > So I am trying to use MatLab to convert the *.mea files from the
> > Hitachi ETG-100 to the *.nirs files necessary to use HOMer.  Any
> > suggestions?  I can't seem to get anywhere with it.  I am NOT a CS
> > or Physics person, so layman's terms will be best.  All help is
> > appreciated.
> >
> > Thanks,
> > anna
> >
> > --
> >
> > Anna Lane
> >
> > Lab Manager
> > Northwestern Infant Cognition Lab
> > Cresap 110
> > 847-467-0246
> > anna-lane at northwestern.edu
> >
> >
> > _______________________________________________
> > Homer-users mailing list
> > Homer-users at nmr.mgh.harvard.edu
> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/homer-users
>
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**************************************************
Dott.Pietro Scatturin
Dipartimento di Psicologia dello Sviluppo e della Socializzazione
Università degli Studi di Padova
Via Venezia 8
35131 Padova- Italy
tel. +39 049-8276933