[Homer-users] Formatting for NIRS-SPM

[Danushka Bandara]

I have experience with NIRS_SPM but not that familiar with HOMER, so if you
can specify how your processed data looks like, I can possibly help you.
Cheers,

On Sun, Jul 12, 2015 at 10:13 PM, <gramigna at unicz.it> wrote:

> Hi,
> I'm also interested in a way to bring data pre-processed with Homer2 to
> Nirs-Spm in order to perform group analysis and to visualize the results
> on MRI brain.
> Any suggestion would be greatly appreciated.
> All the best
>
>
> > Hi all,
> >
> > I am also interested in the answer to Drew's question. Who has experience
> > with bringing .nirs files to NIRS-SPM?
> >
> > Kind regards,
> > Laurien Nagels-Coune
> >
> > Laurien Nagels-Coune | Visiting Graduate Researcher at UCLA | Research
> > Master in Clinical and Cognitive Neuroscience, track Cognitive
> > Neuroscience | I6073928 | Faculty of Psychology and Neuroscience |
> > Maastricht University
> > ________________________________________
> > From: homer-users-bounces at nmr.mgh.harvard.edu
> > [homer-users-bounces at nmr.mgh.harvard.edu] On Behalf Of Drew Halliday
> > [d.halliday at ucl.ac.uk]
> > Sent: 03 July 2015 18:35
> > To: homer-users at nmr.mgh.harvard.edu
> > Subject: [Homer-users] Formatting for NIRS-SPM
> >
> > Dear Homer2 Users,
> >
> > I am attempting to bring data that I've pre-processed in Homer2 to
> > NIRS-SPM to run GLM analyses and am following what appears to be
> > relatively out-dated protocol from NIRS-SPM (2009).  I'm wondering if
> > anyone has had success with importing to NIRS-SPM and if so, if they
> might
> > be able to help.
> >
> > Specifically, following the conversion option and after specifying that
> > the data are from "HomER Software" I select the .nirs file and am then
> > asked to import a .mat file, which according to the available protocol,
> > comes from exporting Hb concentrations through 'delta Concentrations' in
> > the  'Data Display Controls' menu.  My suspicion is that this description
> > is based on an older version of HomER/EasyNIRS and that this option no
> > longer exists in Homer2.  This .mat file is to contain the Hb
> > concentrations, so is presumably what is exported through the export HRF
> > option.  I tried loading a .nirs file and them writing a .mat file with
> > procResult.dcAvg, but receive an error that the .mat file should be
> > binary.  NIRS-SPM doesn't accept .txt or .csv.
> >
> > Any direction would be greatly appreciated.
> >
> > Cheers,
> > Drew
> >
> > _______________________________________________
> > Homer-users mailing list
> > Homer-users at nmr.mgh.harvard.edu
> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/homer-users
> >
> >
> > The information in this e-mail is intended only for the person to whom it
> > is
> > addressed. If you believe this e-mail was sent to you in error and the
> > e-mail
> > contains patient information, please contact the Partners Compliance
> > HelpLine at
> > http://www.partners.org/complianceline . If the e-mail was sent to you
> in
> > error
> > but does not contain patient information, please contact the sender and
> > properly
> > dispose of the e-mail.
> >
> >
>
>
> _______________________________________________
> Homer-users mailing list
> Homer-users at nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/homer-users
>



-- 

Danushka Bandara
about.me/danushka.bandara
[image: Danushka Bandara on about.me]
  <http://about.me/danushka.bandara>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: http://mail.nmr.mgh.harvard.edu/pipermail/homer-users/attachments/20150714/fdc1a723/attachment.html