[Homer-users] Atlas Viewer [Wrong Probe Projection & error messages]

[Hada Ieong]

Hi

Back to my question 3, now that could automatically ran MC app by usually
Matlab 2012a, however it  still got this error messages as below...

What should I do?

-----------

0 output files completed
Index exceeds matrix dimensions.

Error in getFileDateStruct (line 26)
sec     = str2num(file.date(19:20));

Error in existMCOutput (line 78)
        d1(ii,iWav)=getFileDateStruct(filenameInputStruct);

Error in genMCoutput (line 58)
                b = existMCOutput(sensitivity, probe, dirnameSubj);

Error in AtlasViewerGUI>menuItemGenerateMCInput_Callback (line 1483)
        genMCoutput(sensitivity, probe, dirnameSubj);

Error in gui_mainfcn (line 96)
        feval(varargin{:});

Error in AtlasViewerGUI (line 43)
    gui_mainfcn(gui_State, varargin{:});

Error in
@(hObject,eventdata)AtlasViewerGUI('menuItemGenerateMCInput_Callback',hObject,eventdata,guidata(hObject))


Error while evaluating uimenu Callback

------

Hope to hear from anyone. Many thanks!

Sincerely,
Hada


On Wed, Sep 9, 2015 at 11:37 PM, Meryem Ayse Yucel <
mayucel at nmr.mgh.harvard.edu> wrote:

> Hi Hada,
>
> If you can send me your .SD file, I can have a look at it.
>
> In the meantime, can you try following the steps for the simplest probe
> design in section 3.1.1 in AtlasViewer paper (@ neurophotonics), and see
> if you can reproduce the same result in the paper?
>
> Meryem
>
>
>
> > Dear David & Adam,
> >
> > Thanks for asking. I tried to use Matlab 2012, but the problem has not
> > been
> > resolved. The array still projected in the OC, which should be on PFC.
> >
> > R2012 seemed to active the function of Sensitivity but not the Image
> > region. Advice? Thank you very much.
> >
> >
> > [image: Inline image 1]
> >
> > Sincerely,
> > Hada
> >
> >
> > On Tue, Sep 8, 2015 at 2:24 AM, David Boas <dboasma at gmail.com> wrote:
> >
> >> Hada,
> >> Did using Matlab 2012b or earlier work for you?
> >> David
> >>
> >> On Sep 2, 2015, at 1:10 PM, Adam Stone <adam.stone at gallaudet.edu>
> wrote:
> >>
> >> Dear Hada,
> >>
> >> I was having problems with AtlasViewer too and was told I should be
> >> using
> >> Matlab 2012b as newer versions are not supported -- try that and see if
> >> your errors continue?
> >>
> >> Best,
> >> Adam
> >>
> >>
> >>
> >> On Wed, Sep 2, 2015 at 9:59 AM, Hada Ieong <ihada at ufl.edu> wrote:
> >>
> >>> Hi all,
> >>>
> >>> I am using AltasViewer GUI v2.0 with Matlab2015a. I have encountered a
> >>> few problems.
> >>>
> >>> 1. After I designed a probe, I failed to register on the head surface
> >>> even though I cross stringed with a rigid shape, connected to anchor
> >>> points
> >>> through springs and used fixed length springs adjust the distance to
> >>> anchors at nearby reference points; however, all of my designed probes
> >>> are
> >>> always projected to the back of the head no matter what reference
> >>> points I
> >>> anchored. Does anyone have the same problem? There are the error
> >>> messages
> >>> pop up. As I attach in my email. Please help.
> >>>
> >>> 2. The Sensitivity Profile and the Image Recon are disabled. Why?
> >>>
> >>> 3. How to generate MC input manually?Did I somehow miss the MC
> >>> application from the Package?
> >>>
> >>> Any thoughts?? I hope I can hear something from you.
> >>> Thanks.
> >>>
> >>> Sincerely,
> >>> Hada Ieong
> >>> <image.png>
> >>>
> >>>
> >>> _______________________________________________
> >>> Homer-users mailing list
> >>> Homer-users at nmr.mgh.harvard.edu
> >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/homer-users
> >>>
> >>>
> >>> The information in this e-mail is intended only for the person to whom
> >>> it
> >>> is
> >>> addressed. If you believe this e-mail was sent to you in error and the
> >>> e-mail
> >>> contains patient information, please contact the Partners Compliance
> >>> HelpLine at
> >>> http://www.partners.org/complianceline . If the e-mail was sent to you
> >>> in error
> >>> but does not contain patient information, please contact the sender and
> >>> properly
> >>> dispose of the e-mail.
> >>>
> >>>
> >>
> >>
> >> --
> >> Adam Stone
> >> PhD Candidate, Educational Neuroscience
> >> Petitto Brain & Language Laboratory for Neuroimaging (BL2)
> >> Gallaudet University | http://petitto.gallaudet.edu
> >> _______________________________________________
> >> Homer-users mailing list
> >> Homer-users at nmr.mgh.harvard.edu
> >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/homer-users
> >>
> >>
> >>
> >> _______________________________________________
> >> Homer-users mailing list
> >> Homer-users at nmr.mgh.harvard.edu
> >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/homer-users
> >>
> >>
> >> The information in this e-mail is intended only for the person to whom
> >> it
> >> is
> >> addressed. If you believe this e-mail was sent to you in error and the
> >> e-mail
> >> contains patient information, please contact the Partners Compliance
> >> HelpLine at
> >> http://www.partners.org/complianceline . If the e-mail was sent to you
> >> in
> >> error
> >> but does not contain patient information, please contact the sender and
> >> properly
> >> dispose of the e-mail.
> >>
> >>
> > _______________________________________________
> > Homer-users mailing list
> > Homer-users at nmr.mgh.harvard.edu
> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/homer-users
>
> _______________________________________________
> Homer-users mailing list
> Homer-users at nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/homer-users
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: http://mail.nmr.mgh.harvard.edu/pipermail/homer-users/attachments/20160327/288d4fcf/attachment-0001.html